NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951189
Clone id TST38A01NGRL0010_L18
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_L18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CACACACACACACCAATATCTGCGCCCCCCCTGATCCCAGACAGCCAAGTGACAATGGCA
TCCAAATATGGGGGCTCATCAGCAACCTCCCCGAGGTCGACTTCGTCGTCGTCGATGGCG
GGGGGAGGCGGGATGGAGGGGCACAAGCCGCAGTGCGTGTGTGCCCCAACAACTCATGAA
GGATCATTCCGATGCCGTCTGCATCGGTCGTCGTCATCTAAGAAGTGGGACAAGATGACG
TCTGCTAACACAACCCCAGCTACAACCTCCCCCACCATCGAGGCGCAGTAGCCCCAGCTC
CTTATATAGTCCTTTTGCCAAGGAGGTTACATACTCTTTATTCCTCTCAAAAGGATGCAT
AATCTTGATCAATATCTCTGGCTGTATTCTTTGGTTACTACGCAATTCCCCACAATTGTA
CATCCTTTGCCACCTTTGCCCACCACATGTAGATGATGCGCATACTAATCTCTTGATGTA
GATGAGGCTGTAGCATGTGAATCGAACTCGGGCCTTATCTCTGGTTAGAAGAAATGAGTA
GGCTGAGTGTGATTCTAC
■■Homology search results ■■ -
sp_hit_id O87393
Definition sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
Align length 13
Score (bit) 30.8
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951189|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L18, 5'
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium melilo...    31   4.7  
sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspor...    30   8.0  

>sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
           GN=glnT PE=3 SV=1
          Length = 435

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 63  GCHCHLAVWDQGG 25
           GCHCH++VWD  G
Sbjct: 234 GCHCHISVWDLAG 246


>sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspora
           erythraea (strain NRRL 23338) GN=uvrC PE=3 SV=1
          Length = 717

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 86  VADEPPYLDAIVTWLSGIRGG 24
           V + PP  +AI  WLSG+RGG
Sbjct: 332 VPELPPECEAITEWLSGLRGG 352
tr_hit_id B6SH36
Definition tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 25
Score (bit) 51.2
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951189|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L18, 5'
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea m...    51   4e-05
tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea m...    51   5e-05
tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa s...    49   2e-04
tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa sub...    49   2e-04
tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa GN=H05...    49   2e-04
tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_15...    48   3e-04
tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea...    47   7e-04
tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa ...    47   0.001
tr|Q7F8Y8|Q7F8Y8_ORYSJ OSJNBb0116K07.4 protein OS=Oryza sativa s...    47   0.001
tr|A3AVC8|A3AVC8_ORYSJ Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A2XVA5|A2XVA5_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A9NW60|A9NW60_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|A9NRP8|A9NRP8_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|A7QXY0|A7QXY0_VITVI Chromosome undetermined scaffold_235, who...    46   0.002
tr|A9U197|A9U197_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q9ZTM9|Q9ZTM9_PETHY PGPS/D10 OS=Petunia hybrida GN=PGPS/D10 P...    45   0.003
tr|Q9C9V7|Q9C9V7_ARATH Putative uncharacterized protein T23K23.2...    45   0.003
tr|A5AWM3|A5AWM3_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein OJ1572_F...    45   0.003
tr|A2YEW1|A2YEW1_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A2X1P3|A2X1P3_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q69V63|Q69V63_ORYSJ Os06g0608000 protein OS=Oryza sativa subs...    44   0.005
tr|Q5ZF84|Q5ZF84_PLAMJ Putative uncharacterized protein OS=Plant...    44   0.005
tr|A9PHV6|A9PHV6_POPTR Putative uncharacterized protein OS=Popul...    44   0.005
tr|A9NKK5|A9NKK5_PICSI Putative uncharacterized protein OS=Picea...    44   0.005
tr|A3BDF7|A3BDF7_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|Q0E0T0|Q0E0T0_ORYSJ Os02g0525600 protein OS=Oryza sativa subs...    44   0.008
tr|B8AIR0|B8AIR0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.008

>tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 113

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 142 HKPQCVCAPTTHEGSFRCRLHRSSS 216
           H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 50  HAPKCVCAPATHAGSFKCRLHRSSS 74


>tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 108

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 142 HKPQCVCAPTTHEGSFRCRLHRSSS 216
           H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 45  HGPKCVCAPATHAGSFKCRLHRSSS 69


>tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0118P14.9 PE=4 SV=2
          Length = 108

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 148 PQCVCAPTTHEGSFRCRLHRSSS 216
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57  PKCVCAPATHAGSFKCRLHRSSS 79


>tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa subsp.
           japonica GN=OJ000315_02.4 PE=4 SV=1
          Length = 175

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 148 PQCVCAPTTHEGSFRCRLHRSSS 216
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 124 PKCVCAPATHAGSFKCRLHRSSS 146


>tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa
           GN=H0502B11.1 PE=4 SV=1
          Length = 108

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 148 PQCVCAPTTHEGSFRCRLHRSSS 216
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57  PKCVCAPATHAGSFKCRLHRSSS 79


>tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 105

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 148 PQCVCAPTTHEGSFRCRLHRSSS 216
           P+CVCAP TH GSF+CRLHRSSS
Sbjct: 58  PKCVCAPATHAGSFKCRLHRSSS 80


>tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_150
           OS=Arabidopsis thaliana GN=T5P19_150 PE=4 SV=1
          Length = 110

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 145 KPQCVCAPTTHEGSFRCRLHRSSSS 219
           K  C+CAPT HEGSFRCRLHRSS++
Sbjct: 62  KTVCICAPTKHEGSFRCRLHRSSAT 86


>tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93133 PE=4 SV=1
          Length = 429

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +1

Query: 154 CVCAPTTHEGSFRCRLHRSSS 216
           C+CAPTTH GSFRCRLHRSSS
Sbjct: 126 CLCAPTTHAGSFRCRLHRSSS 146


>tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 99

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 154 CVCAPTTHEGSFRCRLHRSSSSKKWDK 234
           C+C+PTTHEGSFRCRLHRS S   W K
Sbjct: 48  CLCSPTTHEGSFRCRLHRSPSG-YWGK 73


>tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa
           GN=OSJNBa0014K14.12 PE=4 SV=3
          Length = 121

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 151 QCVCAPTTHEGSFRCRLHR 207
           QC+C+PTTHEGSFRCRLHR
Sbjct: 25  QCICSPTTHEGSFRCRLHR 43