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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951196
Clone id TST38A01NGRL0010_M01
Library
Length 698
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_M01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTTTGGATATCAGCATCCAATGGTGGCTGGTGTAAGGCCAGGAGCACCACAACCACCAAT
GCCGAACTACTTCATGCCTATAGTGCAAAGACCAGGCCAGCACCAACGATCAGGAAATCG
ACGAGCAGGTGGGCCTACCCAGCCTCAGCAGCAACCGCTTCTGCCTCAGCAGATGATTTC
TCGTGGCGGGAACCGGCCAATGCGCTATTCTCAGACGTCTAGGAATGGCTCAGAAGTATC
TCTTCAAGGAGCCAATAGCTATGAAATGGCTGGAATGCCTTCGAGCACATCTGATACAGG
CTTTATGCCGATTACTGCTTTGGCATCAGCCTTGGCATCGGCTCCTCCTGAACAACAGAG
ATTGATGTTGGGCGAGCAGCTGTATCCACTTGTAGATCATTTGGAACATGATCACGCAGG
AAAAGTTACCGGCATGTTACTCGAGATGGATCAGCCAGAAGTTTTACATTTAATTGAATC
TCCTGAGGCGCTGAAAGCCAAAGTGGCAGAGGCGATGGAGGTATTACAAATGGCCCAAGC
TGGTACTGGGCCAAGTAATGCAATCGACCTGTCAAGCTTATCTTTGAATGAACCTCTTGT
GAGCTAATAGAGCTTTAATATAGTGACTTCGGAGAAGTGGGTCTGGTTAAGAGGGTCACT
TTTTTGAGTAGTCCGCTCATTTTGAGCGGTTTTAGTTG
■■Homology search results ■■ -
sp_hit_id P42731
Definition sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana
Align length 198
Score (bit) 124.0
E-value 6.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951196|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M01, 5'
         (698 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabido...   124   6e-28
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido...   100   1e-20
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabido...    97   8e-20
sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenop...    80   1e-14
sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila...    78   4e-14
sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic ...    78   4e-14
sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenop...    78   4e-14
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=...    78   5e-14
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus no...    77   7e-14
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus mus...    77   7e-14
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo a...    77   9e-14
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sa...    77   9e-14
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos tau...    77   9e-14
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa...    75   4e-13
sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A ...    75   4e-13
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sa...    74   6e-13
sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ...    74   6e-13
sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho...    71   5e-12
sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic ...    67   9e-11
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ...    67   9e-11
sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic ...    67   1e-10
sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic ...    66   2e-10
sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic ...    66   2e-10
sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic ...    65   3e-10
sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic ...    65   3e-10
sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic ...    65   5e-10
sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic ...    64   8e-10
sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2...    64   1e-09
sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic ...    63   2e-09
sp|A4QUF0|PABP_MAGGR Polyadenylate-binding protein, cytoplasmic ...    62   4e-09

>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2
           OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
          Length = 629

 Score =  124 bits (310), Expect = 6e-28
 Identities = 86/198 (43%), Positives = 107/198 (54%), Gaps = 2/198 (1%)
 Frame = +2

Query: 2   FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
           +GYQ  +V G+RPG    P+P++FMP+VQ P Q +  G RR GG              + 
Sbjct: 453 YGYQQQLVPGMRPGGG--PVPSFFMPMVQ-PQQQRPGGGRRPGGIQHSQQQNPMMQQQMH 509

Query: 182 RGGNRPMRYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTGFMPITXXXXXXXXXXX--EQ 355
             G R  RY Q      +V       Y+M            MP+T             EQ
Sbjct: 510 PRG-RMFRYPQGRGGSGDVP-----PYDMGNN---------MPLTIGALASNLSNATPEQ 554

Query: 356 QRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQMA 535
           QR MLGE LYPLV+ +E + A KVTGMLLEMDQ EVLHL+ESPEALKAKVAEAM+VL+  
Sbjct: 555 QRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV 614

Query: 536 QAGTGPSNAIDLSSLSLN 589
            AG        L+SL+L+
Sbjct: 615 AAGGATE---QLASLNLS 629


>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis
            thaliana GN=PAB5 PE=2 SV=2
          Length = 668

 Score = 99.8 bits (247), Expect = 1e-20
 Identities = 78/209 (37%), Positives = 106/209 (50%), Gaps = 12/209 (5%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPI-VQRPGQH-QRSGNRRAGGPTXXXXXXXXXXXM 175
            +GYQ   + G+RPGA  P   N+ MP  +QR  Q   R G RR                M
Sbjct: 469  YGYQVQFMPGMRPGAGPP---NFMMPFPLQRQTQPGPRVGFRRGAN---NMQQQFQQQQM 522

Query: 176  ISRGGNRPMRYSQTSRNGSEVSL-QG---------ANSYEMAGMPSSTSDTGFMPITXXX 325
            + +  +R M  +   RNG E S  QG         ANS+     P  +     + I+   
Sbjct: 523  LQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNA---PQRSHKPTPLTISKLA 579

Query: 326  XXXXXXXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKV 505
                    ++   MLG+ LYPLV+  E  +A KVTGMLLEMDQ E+LHL+ESPEALKAKV
Sbjct: 580  SDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKV 639

Query: 506  AEAMEVLQMAQAGTGPSNAIDLSSLSLNE 592
            +EA++VL+ +      S+  D  +LS +E
Sbjct: 640  SEALDVLRRSADPAAVSSVDDQFALSSSE 668


>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis
            thaliana GN=PAB3 PE=2 SV=1
          Length = 660

 Score = 97.1 bits (240), Expect = 8e-20
 Identities = 65/186 (34%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFM---PIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXX 172
            +G+Q   + G+RPG+     P  F+   P+ ++P    R G RR                
Sbjct: 465  YGFQPQFMPGMRPGSG----PGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMH 520

Query: 173  MISRGGNRPMRYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTG-----FMPITXXXXXXX 337
                 G R M  +   RNG + S+       +  +P   S         +PI+       
Sbjct: 521  RNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPLLPISKLTSSLA 580

Query: 338  XXXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAM 517
                  +  MLGEQLYPLV+  E  H  KVTGMLLEMDQ E+LHL+ESPEALK+KV+EA+
Sbjct: 581  SASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEAL 640

Query: 518  EVLQMA 535
            +VL+++
Sbjct: 641  DVLRLS 646


>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus
           laevis GN=pabpc1-B PE=2 SV=1
          Length = 633

 Score = 80.1 bits (196), Expect = 1e-14
 Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 7/183 (3%)
 Frame = +2

Query: 14  HP---MVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMISR 184
           HP   M   +RP AP+PP  +   P  Q P     S  R A   T             + 
Sbjct: 443 HPFQNMAGAIRPSAPRPPTFSTMRPTSQVP--RVMSAQRVANTSTQTMGPRPTTAAAAAT 500

Query: 185 GGNRPM---RYSQTSRNGSEVSLQGANSYEMAGMPS-STSDTGFMPITXXXXXXXXXXXE 352
              R +   +Y+   RN    + Q  N+     M   +    G  P+T           +
Sbjct: 501 SAVRTVPQYKYAAGVRN----TQQHLNTQPQVAMQQPAVHVQGQEPLT--ASMLAAAPPQ 554

Query: 353 QQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQM 532
           +Q+ MLGE+L+PL+  +    AGK+TGMLLE+D  E+LH++ESPE+L++KV EA+ VLQ 
Sbjct: 555 EQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 614

Query: 533 AQA 541
            QA
Sbjct: 615 HQA 617


>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila
           melanogaster GN=pAbp PE=1 SV=3
          Length = 634

 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 37/70 (52%), Positives = 56/70 (80%)
 Frame = +2

Query: 350 EQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQ 529
           ++Q+ +LGE+LYP+++H+  + AGK+TGMLLE++  E+LH+IE  EALKAKV EA+ VLQ
Sbjct: 566 QEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625

Query: 530 MAQAGTGPSN 559
           + +  T P+N
Sbjct: 626 VHRV-TEPAN 634


>sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic and
           nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1
          Length = 673

 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 57/171 (33%), Positives = 75/171 (43%), Gaps = 5/171 (2%)
 Frame = +2

Query: 29  GVRPGAPQPPMPNYFMPIVQRPGQHQ-----RSGNRRAGGPTXXXXXXXXXXXMISRGGN 193
           G+ P  P P  P Y  P+  RPG  +      +   R GGP+            I RGG 
Sbjct: 499 GMPPQVPYPGAPGY--PV--RPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQ 554

Query: 194 RPMRYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTGFMPITXXXXXXXXXXXEQQRLMLG 373
            P R  + +    +     A S   A                           +Q+ MLG
Sbjct: 555 MPARPHEQAAPAPQAGRLDAQSLARAA------------------------PAEQKQMLG 590

Query: 374 EQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVL 526
           E LYPL+   + + AGK+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct: 591 EALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641


>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus
            laevis GN=pabpc1-A PE=1 SV=3
          Length = 633

 Score = 78.2 bits (191), Expect = 4e-14
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
 Frame = +2

Query: 14   HP---MVAGVRPGAPQPPMPNYFMPIVQRPGQHQ----RSGNRRAGGPTXXXXXXXXXXX 172
            HP   M   +RP AP+PP  +       RP  +Q     S  R A   T           
Sbjct: 443  HPFQNMPGAIRPTAPRPPTFS-----TMRPASNQVPRVMSAQRVANTSTQTMGPRPTTAA 497

Query: 173  MISRGGNRPM---RYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTGFMPITXXXXXXXXX 343
              +    R +   +Y+   RN   ++ Q     ++A    +    G  P+T         
Sbjct: 498  AAAASAVRAVPQYKYAAGVRNQQHLNTQP----QVAMQQPAVHVQGQEPLTASMLAAAPP 553

Query: 344  XXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEV 523
              ++Q+ MLGE+L+PL+  +    AGK+TGMLLE+D  E+LH++ESPE+L++KV EA+ V
Sbjct: 554  --QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 611

Query: 524  LQMAQAGTGPSNAIDLSSL 580
            LQ  QA       ++ + +
Sbjct: 612  LQAHQAKEAAQKVVNATGV 630


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein
           OS=Xenopus tropicalis GN=epabp PE=2 SV=1
          Length = 629

 Score = 77.8 bits (190), Expect = 5e-14
 Identities = 46/113 (40%), Positives = 66/113 (58%)
 Frame = +2

Query: 203 RYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTGFMPITXXXXXXXXXXXEQQRLMLGEQL 382
           +YS   RN   +   G N++    M  +    G  P+T           ++Q+ MLGE+L
Sbjct: 509 KYSCAVRNVQPI---GTNTHLQQVMEPAVLMQGQEPLTASSLASAPP--QEQKQMLGERL 563

Query: 383 YPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQMAQA 541
           YPL+  +    AGK+TGMLLE+D  E+LH++ESPE+L +KV EA+ VLQ  QA
Sbjct: 564 YPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQA 616


>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus
           norvegicus GN=Pabpc1 PE=2 SV=1
          Length = 636

 Score = 77.4 bits (189), Expect = 7e-14
 Identities = 36/73 (49%), Positives = 54/73 (73%)
 Frame = +2

Query: 350 EQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQ 529
           ++Q+ MLGE+L+PL+  +    AGK+TGMLLE+D  E+LH++ESPE+L++KV EA+ VLQ
Sbjct: 556 QEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

Query: 530 MAQAGTGPSNAID 568
             QA      A++
Sbjct: 616 AHQAKEAAQKAVN 628


>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus
           musculus GN=Pabpc1 PE=1 SV=1
          Length = 636

 Score = 77.4 bits (189), Expect = 7e-14
 Identities = 36/73 (49%), Positives = 54/73 (73%)
 Frame = +2

Query: 350 EQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQ 529
           ++Q+ MLGE+L+PL+  +    AGK+TGMLLE+D  E+LH++ESPE+L++KV EA+ VLQ
Sbjct: 556 QEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615

Query: 530 MAQAGTGPSNAID 568
             QA      A++
Sbjct: 616 AHQAKEAAQKAVN 628
tr_hit_id Q94IQ3
Definition tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2 (Fragment) OS=Anemia phyllitidis
Align length 206
Score (bit) 230.0
E-value 7.0e-59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951196|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M01, 5'
         (698 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2 (Fr...   230   7e-59
tr|P93616|P93616_WHEAT Poly(A)-binding protein OS=Triticum aesti...   176   1e-42
tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia ph...   173   8e-42
tr|Q9M6E4|Q9M6E4_TOBAC Poly(A)-binding protein (Fragment) OS=Nic...   172   1e-41
tr|Q1EMR9|Q1EMR9_PLAMJ PolyA-binding protein (Fragment) OS=Plant...   164   5e-39
tr|Q6YYV1|Q6YYV1_ORYSJ Os09g0115400 protein OS=Oryza sativa subs...   164   7e-39
tr|A2YYH2|A2YYH2_ORYSI Putative uncharacterized protein OS=Oryza...   164   7e-39
tr|Q9AT32|Q9AT32_DAUCA Poly(A)-binding protein OS=Daucus carota ...   162   1e-38
tr|A5B5N0|A5B5N0_VITVI Putative uncharacterized protein (Chromos...   160   1e-37
tr|A9SVZ7|A9SVZ7_PHYPA Predicted protein OS=Physcomitrella paten...   157   6e-37
tr|A7PLE6|A7PLE6_VITVI Chromosome chr7 scaffold_20, whole genome...   157   8e-37
tr|A9TLC5|A9TLC5_PHYPA Predicted protein OS=Physcomitrella paten...   154   5e-36
tr|Q6Z050|Q6Z050_ORYSJ Os08g0314800 protein OS=Oryza sativa subs...   151   4e-35
tr|Q6UUN5|Q6UUN5_ORYSJ Putative poly(A)-binding protein (Putativ...   151   4e-35
tr|B8B9P0|B8B9P0_ORYSI Putative uncharacterized protein OS=Oryza...   151   4e-35
tr|Q9M6E5|Q9M6E5_TOBAC Poly(A)-binding protein (Fragment) OS=Nic...   147   8e-34
tr|Q9M6E6|Q9M6E6_TOBAC Poly(A)-binding protein OS=Nicotiana taba...   146   1e-33
tr|Q9M549|Q9M549_CUCSA Poly(A)-binding protein OS=Cucumis sativu...   145   2e-33
tr|A9TPK9|A9TPK9_PHYPA Predicted protein OS=Physcomitrella paten...   145   2e-33
tr|A9PEX9|A9PEX9_POPTR Putative uncharacterized protein OS=Popul...   144   7e-33
tr|A5BR81|A5BR81_VITVI Putative uncharacterized protein (Chromos...   142   2e-32
tr|Q7X675|Q7X675_ORYSA OSJNBa0014K14.19 protein OS=Oryza sativa ...   141   5e-32
tr|Q7F8Y1|Q7F8Y1_ORYSJ Os04g0504800 protein OS=Oryza sativa subs...   141   5e-32
tr|B8ARD0|B8ARD0_ORYSI Putative uncharacterized protein OS=Oryza...   141   5e-32
tr|A3AVD4|A3AVD4_ORYSJ Putative uncharacterized protein OS=Oryza...   141   5e-32
tr|Q00M91|Q00M91_SOYBN Poly(A)-binding protein OS=Glycine max PE...   140   6e-32
tr|A7QRL0|A7QRL0_VITVI Chromosome undetermined scaffold_151, who...   138   4e-31
tr|A9S664|A9S664_PHYPA Predicted protein OS=Physcomitrella paten...   135   2e-30
tr|Q9FXA2|Q9FXA2_ARATH Putative Poly-A Binding Protein OS=Arabid...   132   2e-29
tr|B6U4M0|B6U4M0_MAIZE Polyadenylate-binding protein 2 OS=Zea ma...   132   2e-29

>tr|Q94IQ3|Q94IQ3_ANEPH Polyadenylated mRNA-binding protein 2
           (Fragment) OS=Anemia phyllitidis GN=Pab2 PE=2 SV=1
          Length = 472

 Score =  230 bits (586), Expect = 7e-59
 Identities = 134/206 (65%), Positives = 147/206 (71%), Gaps = 5/206 (2%)
 Frame = +2

Query: 2   FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQH-QRSGNRRAGGP-TXXXXXXXXXXXM 175
           FGYQHPMV G+RPG PQ  MPNYF+P VQRPGQ  QR GNRR G P             M
Sbjct: 271 FGYQHPMVPGMRPGGPQ--MPNYFLPAVQRPGQQGQRMGNRRPGPPFLHQQQQPLMQQQM 328

Query: 176 ISRGGNRPMRYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTG-FMPITXXXXXXXXXXXE 352
             RG +RPMRYSQ+SR   +VSLQG +S +M G   ++SDTG +MP             E
Sbjct: 329 APRGNSRPMRYSQSSRVAPDVSLQGYSSLDMGGALPNSSDTGLYMPALASALASASP--E 386

Query: 353 QQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQM 532
           QQR+MLGEQLYPLVD LEHDHAGKVTGMLLEMDQ EVLHLIESPEALKAKVAEAM+VLQM
Sbjct: 387 QQRVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLQM 446

Query: 533 AQAGTGPS-NAID-LSSLSLNEPLVS 604
           AQA  G S N ID  +SLSLNEPL S
Sbjct: 447 AQANAGASTNGIDHFASLSLNEPLAS 472


>tr|P93616|P93616_WHEAT Poly(A)-binding protein OS=Triticum aestivum
            GN=wheatpab PE=1 SV=1
          Length = 651

 Score =  176 bits (446), Expect = 1e-42
 Identities = 104/207 (50%), Positives = 124/207 (59%), Gaps = 6/207 (2%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
            FG+Q P + G+RPG    PMPN+ MP+VQ+  Q QR   RRAG              M+ 
Sbjct: 447  FGFQQPFMPGMRPGGA--PMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQMLG 504

Query: 182  RGGNRPMRYSQTSRNGSEVSLQGANS-----YEMAGMPS-STSDTGFMPITXXXXXXXXX 343
            RGG R  RY QT R   + ++ G        YEM GMP     ++  +PI          
Sbjct: 505  RGGGRGYRY-QTGRGMPDPAMHGVGGVMTSPYEMGGMPMRDAGESQPVPIGALASALANS 563

Query: 344  XXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEV 523
              E QR+MLGE LYPLVD LEHD A KVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAMEV
Sbjct: 564  PPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 623

Query: 524  LQMAQAGTGPSNAIDLSSLSLNEPLVS 604
            L+ AQ  T  S    L+SLSLN+ L+S
Sbjct: 624  LRSAQQHTNQSPEQQLASLSLNDGLIS 650


>tr|Q39953|Q39953_ANEPH Poly(A)-mRNA binding protein OS=Anemia
            phyllitidis PE=2 SV=1
          Length = 638

 Score =  173 bits (439), Expect = 8e-42
 Identities = 109/203 (53%), Positives = 128/203 (63%), Gaps = 2/203 (0%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQH-QRSGNRRAGGPTXXXXXXXXXXXMI 178
            FGYQ PMV  +RP +    +PNYFMP VQRPGQ  QR  NRR G                
Sbjct: 445  FGYQQPMVPTMRPTSAG--VPNYFMP-VQRPGQQIQRPVNRRGGVGPLQPQHHQPPPQQF 501

Query: 179  SRGGNRPMRYSQTSRNGSEVSLQGANSYEMAGMPSSTSDTGFMPITXXXXXXXXXXXEQQ 358
             RGGNR MRYSQ SR   + ++QG   + M G  ++ S+ G MP             E+Q
Sbjct: 502  PRGGNRSMRYSQFSRTMPDSTMQG---FGMMGA-ANASNIGLMPALASALASASP--EEQ 555

Query: 359  RLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLQMAQ 538
            R+MLGEQLYPLVD LEHDHAGKVTGMLLEMDQPEVLHLI+    LKAKVAEAM+VL+MAQ
Sbjct: 556  RVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQPEVLHLIDLLRQLKAKVAEAMDVLRMAQ 615

Query: 539  AGTGPSNAID-LSSLSLNEPLVS 604
                 ++ +D L+SLSL E L S
Sbjct: 616  GSISSNSPLDQLASLSLTESLTS 638


>tr|Q9M6E4|Q9M6E4_TOBAC Poly(A)-binding protein (Fragment)
           OS=Nicotiana tabacum GN=PABP PE=2 SV=1
          Length = 479

 Score =  172 bits (437), Expect = 1e-41
 Identities = 110/210 (52%), Positives = 126/210 (60%), Gaps = 9/210 (4%)
 Frame = +2

Query: 2   FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXX--M 175
           FGYQ  +V G+RPG    PMPN+FMP+VQ+  Q QR G RR  GP              M
Sbjct: 277 FGYQQQLVPGMRPGGA--PMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQM 334

Query: 176 ISRGGNRPMRYSQTSRNGSEVSLQGANS------YEMAGMPSSTSDTGF-MPITXXXXXX 334
           + RG  R  RY    RNG E  + G         Y+M GM    S  G  MPI+      
Sbjct: 335 LPRG--RMYRYPP-GRNGPEGPMPGVPGGMLSVPYDMGGMLPRDSAMGQPMPISTLASAL 391

Query: 335 XXXXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEA 514
                EQQR MLGE LYPLVD LEH+HA KVTGMLLEMDQ EVLHL+ESPEALKAKVAEA
Sbjct: 392 ANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 451

Query: 515 MEVLQMAQAGTGPSNAIDLSSLSLNEPLVS 604
           MEVL+  Q  T P++   L+SLSLN+ LVS
Sbjct: 452 MEVLRNVQQTTNPAD--QLASLSLNDNLVS 479


>tr|Q1EMR9|Q1EMR9_PLAMJ PolyA-binding protein (Fragment) OS=Plantago
           major GN=pabp1 PE=2 SV=1
          Length = 314

 Score =  164 bits (415), Expect = 5e-39
 Identities = 101/207 (48%), Positives = 120/207 (57%), Gaps = 6/207 (2%)
 Frame = +2

Query: 2   FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
           FGYQ  +V G+RPG    PMPN+FMP+VQ+  Q QR G RR GGP               
Sbjct: 111 FGYQQQLVPGMRPGGT--PMPNFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVMQQQM 168

Query: 182 RGGNRPMRYSQTSRNGSEVSLQGANS----YEMAGM--PSSTSDTGFMPITXXXXXXXXX 343
               R  R+    RN  +V + G       Y+M GM    + +    MP+T         
Sbjct: 169 MPRGRMYRFPP-GRNVPDVPMTGGGMFSVPYDMTGMLPRDAAAIPQPMPVTALASALANA 227

Query: 344 XXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEV 523
             EQQR MLGE LYPLVD LEH+HA KVTGMLLEMDQ EVLHL+ESP+ALK+KV EAMEV
Sbjct: 228 TPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPDALKSKVNEAMEV 287

Query: 524 LQMAQAGTGPSNAIDLSSLSLNEPLVS 604
           L+  Q     S A  L+SLSLN+ LVS
Sbjct: 288 LRNVQQQGNNSPADQLASLSLNDNLVS 314


>tr|Q6YYV1|Q6YYV1_ORYSJ Os09g0115400 protein OS=Oryza sativa subsp.
            japonica GN=OJ1310_F05.15 PE=2 SV=1
          Length = 662

 Score =  164 bits (414), Expect = 7e-39
 Identities = 103/209 (49%), Positives = 126/209 (60%), Gaps = 8/209 (3%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
            FG+Q P++ G+RPGA   PMPN+ MP+VQ+  Q QR   RRAG              M++
Sbjct: 457  FGFQQPLMPGMRPGAG--PMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMGQQQMMA 514

Query: 182  RGGNRPMRYSQTSRNGSEVSLQGANS------YEMAGMPSSTSDTGF-MPITXXXXXXXX 340
            RGG R  RY  T R   + ++ G         YEM GMP   +     +PI         
Sbjct: 515  RGG-RGYRYP-TGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGALATALAN 572

Query: 341  XXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAME 520
               +QQR+MLGE LYPLVD LEH+ A KVTGMLLEMDQ EVLHL+ESPEALKAKVAEAME
Sbjct: 573  AAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 632

Query: 521  VLQMA-QAGTGPSNAIDLSSLSLNEPLVS 604
            VL+ A Q  T  +    L+SLSLN+ +VS
Sbjct: 633  VLRTAQQIQTNATPEQQLASLSLNDGVVS 661


>tr|A2YYH2|A2YYH2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_30396 PE=4 SV=1
          Length = 662

 Score =  164 bits (414), Expect = 7e-39
 Identities = 103/209 (49%), Positives = 126/209 (60%), Gaps = 8/209 (3%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
            FG+Q P++ G+RPGA   PMPN+ MP+VQ+  Q QR   RRAG              M++
Sbjct: 457  FGFQQPLMPGMRPGAG--PMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMGQQQMMA 514

Query: 182  RGGNRPMRYSQTSRNGSEVSLQGANS------YEMAGMPSSTSDTGF-MPITXXXXXXXX 340
            RGG R  RY  T R   + ++ G         YEM GMP   +     +PI         
Sbjct: 515  RGG-RGYRYP-TGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGALATALAN 572

Query: 341  XXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAME 520
               +QQR+MLGE LYPLVD LEH+ A KVTGMLLEMDQ EVLHL+ESPEALKAKVAEAME
Sbjct: 573  AAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 632

Query: 521  VLQMA-QAGTGPSNAIDLSSLSLNEPLVS 604
            VL+ A Q  T  +    L+SLSLN+ +VS
Sbjct: 633  VLRTAQQIQTNATPEQQLASLSLNDGVVS 661


>tr|Q9AT32|Q9AT32_DAUCA Poly(A)-binding protein OS=Daucus carota PE=2
            SV=1
          Length = 658

 Score =  162 bits (411), Expect = 1e-38
 Identities = 102/208 (49%), Positives = 119/208 (57%), Gaps = 7/208 (3%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXXMIS 181
            FGYQ  +V G+RPG    PMPN+FMP+VQ+  Q QR G RR  GP               
Sbjct: 457  FGYQQQLVPGMRPGGG--PMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQL 514

Query: 182  RGGNRPMRYSQTSRNGSEVSLQGANS------YEMAGM-PSSTSDTGFMPITXXXXXXXX 340
                R  R+    RN  +V++ G         Y M GM P   +    MPIT        
Sbjct: 515  MPRGRMYRFPP-GRNVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALAN 573

Query: 341  XXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEAME 520
               +QQR MLGE LYPLVD LEHDHA KVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+
Sbjct: 574  APADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMD 633

Query: 521  VLQMAQAGTGPSNAIDLSSLSLNEPLVS 604
            VL+     + P+ A  L  LSLNE LVS
Sbjct: 634  VLRNV---SQPNVADQLGGLSLNENLVS 658


>tr|A5B5N0|A5B5N0_VITVI Putative uncharacterized protein (Chromosome
            chr18 scaffold_1, whole genome shotgun sequence) OS=Vitis
            vinifera GN=GSVIVT00014861001 PE=4 SV=1
          Length = 640

 Score =  160 bits (404), Expect = 1e-37
 Identities = 101/209 (48%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYFMPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXXX--M 175
            FGYQ  +V G+RPG    PMPN+F+P+VQ+  Q QR G RR  GP              M
Sbjct: 435  FGYQQQLVPGMRPGGA--PMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQM 492

Query: 176  ISRGGNRPMRYSQTSRNGSEVSLQGANS------YEMAGMPSSTSDTGF-MPITXXXXXX 334
            + RGG R  RY    RN  +V + G         Y+M G+P   +  G  MPI+      
Sbjct: 493  LPRGG-RVYRYPP-GRNMPDVPMPGVAGGMLSIPYDMGGVPLRDAAIGQPMPISALASAL 550

Query: 335  XXXXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEALKAKVAEA 514
                 +QQR MLGE LYPLVD LEH+ A KVTGMLLEMDQ EVLHL+ESPEALK+KVAEA
Sbjct: 551  ANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEA 610

Query: 515  MEVLQMAQAGTGPSNAIDLSSLSLNEPLV 601
            M+VL+        S    L+SLSLN+ LV
Sbjct: 611  MDVLRNVAQQQANSPTEQLASLSLNDSLV 639


>tr|A9SVZ7|A9SVZ7_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_216291 PE=4 SV=1
          Length = 645

 Score =  157 bits (397), Expect = 6e-37
 Identities = 100/200 (50%), Positives = 120/200 (60%), Gaps = 16/200 (8%)
 Frame = +2

Query: 2    FGYQHPMVAGVRPGAPQPPMPNYF----MPIVQRPGQHQRSGNRRAGGPTXXXXXXXXXX 169
            FGYQ  ++   RPG  Q   PNY     +P +++  Q QR+G RR G P           
Sbjct: 441  FGYQPQLI---RPGGAQ--FPNYMGFPNVPPLRQGQQGQRAGGRRGGAPQQQQPQQQ--- 492

Query: 170  XMISRGGNRPMRYSQTSRNGSEVSL--QGANS------YEMAGMPSSTSDTGF----MPI 313
             MI RGGNR  RY+  +RN  +V++  QG          E+ G+P + +D G     +PI
Sbjct: 493  -MIQRGGNRNFRYTTNARNTPDVAVPPQGIMGAMLPVPIEIGGVPVANADAGVPQQPLPI 551

Query: 314  TXXXXXXXXXXXEQQRLMLGEQLYPLVDHLEHDHAGKVTGMLLEMDQPEVLHLIESPEAL 493
            +           EQQR MLGEQLYPLVD LEHD AGKVTGMLLEMDQ EVLHLIESPEAL
Sbjct: 552  SALASALASAPPEQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPEAL 611

Query: 494  KAKVAEAMEVLQMAQAGTGP 553
            KAKVAEAM+VL+MAQA   P
Sbjct: 612  KAKVAEAMDVLRMAQAVPSP 631