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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951204
Clone id TST38A01NGRL0010_M10
Library
Length 264
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_M10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
ATTGTTTCTCCTTTTAACCTCTGAACAGGGTTCCTCCTTTTTCCTCTGCTGTTGATGCGA
TTCTGGCATTTTCGTTGTCCCCTCTATACTGAATGAATGGAGGCTGCATCCTCTGATGGC
TTGTTTTCTTCGTTTGGAGGTATTGGAGACATTCTTCTCTCGTCTTCTTGTCTTTTTCAC
CTGGTTGCCTGTTCTAGCTTTGGTCGTTGATCAAAATTCACAAGTGACACAACATTTCCT
ATTGCAAGACAAACTGGGCGTGGA
■■Homology search results ■■ -
sp_hit_id O18746
Definition sp|O18746|HSP1_PLAMS Sperm protamine-P1 OS=Planigale maculata sinualis
Align length 55
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951204|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M10, 5'
         (264 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O18746|HSP1_PLAMS Sperm protamine-P1 OS=Planigale maculata si...    32   1.3  
sp|P64126|HEMH_STAAW Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|Q6G8A3|HEMH_STAAS Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|Q6GFM4|HEMH_STAAR Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|P64125|HEMH_STAAN Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|P64124|HEMH_STAAM Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|Q5HEU3|HEMH_STAAC Ferrochelatase OS=Staphylococcus aureus (st...    32   1.3  
sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila ...    31   2.2  
sp|Q64518|AT2A3_MOUSE Sarcoplasmic/endoplasmic reticulum calcium...    30   3.8  
sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens G...    30   5.0  
sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum calcium...    30   5.0  
sp|Q88IU4|SYC_PSEPK Cysteinyl-tRNA synthetase OS=Pseudomonas put...    30   5.0  
sp|B0KUU0|SYC_PSEPG Cysteinyl-tRNA synthetase OS=Pseudomonas put...    30   5.0  
sp|A5W458|SYC_PSEP1 Cysteinyl-tRNA synthetase OS=Pseudomonas put...    30   5.0  
sp|Q11BC8|IF2_MESSB Translation initiation factor IF-2 OS=Mesorh...    30   5.0  
sp|Q9QSR0|TAT_HV1VI Protein Tat OS=Human immunodeficiency virus ...    29   6.5  
sp|Q8K3K8|OPTN_MOUSE Optineurin OS=Mus musculus GN=Optn PE=1 SV=1      29   6.5  
sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN...    29   6.5  
sp|P18596|AT2A3_RAT Sarcoplasmic/endoplasmic reticulum calcium A...    29   6.5  
sp|Q54WD7|Y9719_DICDI Probable serine/threonine-protein kinase D...    29   8.5  
sp|Q54P62|ORC6_DICDI Origin recognition complex subunit 6 OS=Dic...    29   8.5  
sp|Q4R7D5|CO033_MACFA Uncharacterized protein C15orf33 homolog O...    29   8.5  
sp|Q2TAC2|CCD57_HUMAN Coiled-coil domain-containing protein 57 O...    29   8.5  
sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium...    29   8.5  
sp|P53146|USE1_YEAST Protein transport protein USE1 OS=Saccharom...    29   8.5  
sp|Q76MJ5|ERN2_HUMAN Serine/threonine-protein kinase/endoribonuc...    29   8.5  

>sp|O18746|HSP1_PLAMS Sperm protamine-P1 OS=Planigale maculata
           sinualis GN=PRM1 PE=2 SV=3
          Length = 62

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = -1

Query: 222 CEF*STTKARTGNQVKKTRRREKNVSNT-------SKRRKQAIRGCSLHSFSIEG 79
           C   S +++R+ NQ ++ RRR  N   T       S+RR+   RGCS   +S  G
Sbjct: 4   CRRHSRSRSRSRNQCQRRRRRRYNRRRTYRRSRRHSRRRRGRRRGCSRRRYSRRG 58


>sp|P64126|HEMH_STAAW Ferrochelatase OS=Staphylococcus aureus
           (strain MW2) GN=hemH PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|Q6G8A3|HEMH_STAAS Ferrochelatase OS=Staphylococcus aureus
           (strain MSSA476) GN=hemH PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|Q6GFM4|HEMH_STAAR Ferrochelatase OS=Staphylococcus aureus
           (strain MRSA252) GN=hemH PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|P64125|HEMH_STAAN Ferrochelatase OS=Staphylococcus aureus
           (strain N315) GN=hemH PE=1 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|P64124|HEMH_STAAM Ferrochelatase OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=hemH PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|Q5HEU3|HEMH_STAAC Ferrochelatase OS=Staphylococcus aureus
           (strain COL) GN=hemH PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 181 GEKDKKTREECLQY-LQTKKTSHQRMQPPFIQYRGDNENARIASTAEEK 38
           G  DK+  EE  +Y +Q     H   QP FI+Y  +  N  +A   EE+
Sbjct: 122 GSYDKRADEEAAKYGIQLTHVKHYYEQPKFIEYWTNKVNETLAQIPEEE 170


>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila
            pseudoobscura pseudoobscura GN=rno PE=3 SV=2
          Length = 3313

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -1

Query: 210  STTKARTGNQVKK---TRRREKNVSNTSKRRKQAIRGCSLHSFSIEGTTKMPESH-QQQR 43
            S  K+ TG+ +KK    R  E+      +R+ +A  G S  S +    T   E   +QQR
Sbjct: 862  SRRKSTTGSPLKKQSYARSVEQRQKQRQRRQSEAAAGASAASPNSRSATSSSEDEDEQQR 921

Query: 42   KKEEP 28
            +++EP
Sbjct: 922  RRQEP 926


>sp|Q64518|AT2A3_MOUSE Sarcoplasmic/endoplasmic reticulum calcium
           ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=2
          Length = 1038

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 108 CSLHSFSIEGTTKMPESHQQQRKKEEPCSE 19
           C LH F+I GTT  PE   +Q ++   C +
Sbjct: 377 CRLHEFTISGTTYTPEGEVRQGEQPVRCGQ 406


>sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens
           GN=ZNF280D PE=1 SV=3
          Length = 979

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -1

Query: 162 REKNVSNTSKRRKQAI-----RGCSLHSFSIEGTTKMPESHQQQRKKEEPC 25
           RE   SN+  ++ +A       GC+ +SF    TTK  ES     K+ E C
Sbjct: 763 RETETSNSESKQDKAASSKEKNGCNANSFEGSSTTKSEESITVSDKENETC 813
tr_hit_id B4KU78
Definition tr|B4KU78|B4KU78_DROMO GI18910 OS=Drosophila mojavensis
Align length 75
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951204|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M10, 5'
         (264 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KU78|B4KU78_DROMO GI18910 OS=Drosophila mojavensis GN=GI189...    37   0.64 
tr|Q5CXS4|Q5CXS4_CRYPV Hypothetical low complexity protein with ...    35   1.4  
tr|A4VMT0|A4VMT0_PSEU5 Ribonuclease E OS=Pseudomonas stutzeri (s...    35   1.9  
tr|B7YZF2|B7YZF2_DROME Shavenoid, isoform B OS=Drosophila melano...    34   4.2  
tr|B4HNF5|B4HNF5_DROSE GM21280 OS=Drosophila sechellia GN=GM2128...    34   4.2  
tr|A1Z8J5|A1Z8J5_DROME Shavenoid, isoform A OS=Drosophila melano...    34   4.2  
tr|Q6UEZ0|Q6UEZ0_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   7.1  

>tr|B4KU78|B4KU78_DROMO GI18910 OS=Drosophila mojavensis GN=GI18910
           PE=4 SV=1
          Length = 456

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
 Frame = -1

Query: 201 KARTGNQVKKTRRREKNVSNTSKRRKQAIRGCSLHSFSI--EGTTKMP---------ESH 55
           K RT +  K+ ++RE++ S+T++ R Q  R  +  +  I  E +T  P         + H
Sbjct: 103 KQRTTSSAKRDQQRERSTSSTARARPQLRRTATEETLDIADEESTPTPTRPSQQQQQQQH 162

Query: 54  QQQRKKEEPCSEVKR 10
           QQQR++E    E++R
Sbjct: 163 QQQRRQESEQRELER 177


>tr|Q5CXS4|Q5CXS4_CRYPV Hypothetical low complexity protein with
           coiled coil regions OS=Cryptosporidium parvum Iowa II
           GN=cgd7_5130 PE=4 SV=1
          Length = 1624

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 174 KTRRREKNVSNTSKRRKQAIRGCSLHSFSIEGTTKMPE 61
           K + ++ N + TSK  K  +RG SL++  IEG+ K PE
Sbjct: 683 KVKSKKSNPNKTSKNNKSRLRGKSLNNNEIEGSKKKPE 720


>tr|A4VMT0|A4VMT0_PSEU5 Ribonuclease E OS=Pseudomonas stutzeri
           (strain A1501) GN=rne PE=4 SV=1
          Length = 1070

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -2

Query: 212 DQRPKLEQATR*KRQEDERRMSPIPPNEENKPSEDAASIHSV*RGQRKCQNRINSRGKRR 33
           +++P+ E+  R +RQ  E R  P PP EE KP E A +  +  R +R  +     R +R+
Sbjct: 642 ERQPREERQAREERQPREERQ-PRPPREERKPREQAEAAEAQPRRERAPREERKPREERK 700

Query: 32  NPVQ 21
             ++
Sbjct: 701 RELR 704


>tr|B7YZF2|B7YZF2_DROME Shavenoid, isoform B OS=Drosophila
            melanogaster GN=sha PE=4 SV=1
          Length = 1633

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 206  RPKLEQATR*KRQEDERRMSPIPPN--EENKPSEDAASIHSV*RGQRKCQNRINS 48
            RPK+ Q       + +R + P PPN  E   P EDA S+HS   G  + +N  N+
Sbjct: 1171 RPKVNQHYCPPLVQSKRPLPPPPPNSSEHQAPDEDAYSLHSEITGTSEFENSCNN 1225


>tr|B4HNF5|B4HNF5_DROSE GM21280 OS=Drosophila sechellia GN=GM21280
            PE=4 SV=1
          Length = 1627

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 206  RPKLEQATR*KRQEDERRMSPIPPN--EENKPSEDAASIHSV*RGQRKCQNRINS 48
            RPK+ Q       + +R + P PPN  E   P EDA S+HS   G  + +N  N+
Sbjct: 1165 RPKVNQHYCPPLVQSKRPLPPPPPNSSEHQAPDEDAYSLHSEITGTSEFENSCNN 1219


>tr|A1Z8J5|A1Z8J5_DROME Shavenoid, isoform A OS=Drosophila
            melanogaster GN=sha PE=4 SV=1
          Length = 1626

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 206  RPKLEQATR*KRQEDERRMSPIPPN--EENKPSEDAASIHSV*RGQRKCQNRINS 48
            RPK+ Q       + +R + P PPN  E   P EDA S+HS   G  + +N  N+
Sbjct: 1164 RPKVNQHYCPPLVQSKRPLPPPPPNSSEHQAPDEDAYSLHSEITGTSEFENSCNN 1218


>tr|Q6UEZ0|Q6UEZ0_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 102

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 264 STPSLSCN----RKCCVTCEF*STTKARTGNQVKKTRRREKNVSNTSKRRKQAI 115
           S P  +CN    +KCC  C+   TTK    +  +K RR+ +  S++S+  +  I
Sbjct: 16  SQPKTACNTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQDPI 69