| DK951213 |
| Clone id |
TST38A01NGRL0010_M19 |
| Library |
TST38 |
| Length |
556 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_M19. 5' end sequence. |
| Accession |
DK951213 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
CATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTCCGTCTCTTCTCTACACTTCTCCA
TCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGCTTCCGTGTCGACTCCACAAATGG
TATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCTGGAAGGAAGAGTTTGAGCAGAC
AGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAACAACCTTGTTGATCTCACTCTC
TGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGTGGCACTACCACAACAATGCCCA
TGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAGGGCAGGGGGACCGACAAACAAG
ATTTTTTTTTTTCCCCCCCCCCCGCTGTCAGGGGCTCTGGGAGAAAAAAAAGGGGGGGGG
TGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACAACAACACACAAGGAGTGGGGGTT
TTGAGAGCACTGCAGAGGGGCGCCAGGCCTTGCACATGGCAGCTACATAAGCCTCAAGGG
ATCTCTACAGTAAGCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q03364 |
| Definition |
sp|Q03364|FGFR2_XENLA Fibroblast growth factor receptor 2 OS=Xenopus laevis |
| Align length |
72 |
| Score (bit) |
33.1 |
| E-value |
0.93 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B5YLR2 |
| Definition |
tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 |
| Align length |
101 |
| Score (bit) |
38.1 |
| E-value |
0.32 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951213|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M19, 5'
(556 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudo... 38 0.32
tr|B0F9V7|B0F9V7_CHLRE Zygote-expressed homeodomain protein OS=C... 36 1.6
tr|Q4RI56|Q4RI56_TETNG Chromosome 8 SCAF15044, whole genome shot... 35 2.7
tr|Q4SSB9|Q4SSB9_TETNG Chromosome undetermined SCAF14473, whole ... 34 4.6
tr|A8JAN8|A8JAN8_CHLRE Predicted protein OS=Chlamydomonas reinha... 34 4.6
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry... 34 4.6
tr|Q0S3Q9|Q0S3Q9_RHOSR Ferredoxin--NAD(+) reductase OS=Rhodococc... 34 6.1
tr|Q9XUQ0|Q9XUQ0_CAEEL Protein T16G1.1, partially confirmed by t... 34 6.1
>tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPS_10869 PE=4 SV=1
Length = 414
Score = 38.1 bits (87), Expect = 0.32
Identities = 31/101 (30%), Positives = 40/101 (39%)
Frame = +2
Query: 47 STLLHPPEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTGNKGGGSERVGRTTL 226
ST HPP + S+R+R++S + A K WK +FE NK GGS G T L
Sbjct: 2 STKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVE-GETRL 60
Query: 227 LISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQGD 349
LS Y N + P + QGD
Sbjct: 61 ANKLSK------------KYGNQVTLLVAPPHRSMRQNQGD 89
>tr|B0F9V7|B0F9V7_CHLRE Zygote-expressed homeodomain protein
OS=Chlamydomonas reinhardtii GN=HDZ1 PE=2 SV=1
Length = 1767
Score = 35.8 bits (81), Expect = 1.6
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Frame = +1
Query: 301 CKGGSTINAVPKRAGGPTNKIFFFPPPPLSGALGEKKGGGCRRRLVHVGEGN-------N 459
C VP R GP F F PP+ G E GGG +RR V EG+
Sbjct: 191 CVAARATLPVPYREDGPELG-FLFDEPPMPG---ESAGGGGKRRRVAGPEGDAGAGGSLG 246
Query: 460 NTQGVG-VLRALQRGARPCTWQLHKPQGISTVS 555
+GVG VL G +P Q P G+ TV+
Sbjct: 247 GPEGVGSVLLRRPGGNKPIVGQEAGPVGVMTVA 279
>tr|Q4RI56|Q4RI56_TETNG Chromosome 8 SCAF15044, whole genome shotgun
sequence OS=Tetraodon nigroviridis GN=GSTENG00034024001
PE=4 SV=1
Length = 2182
Score = 35.0 bits (79), Expect = 2.7
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +1
Query: 331 PKRAGGPTNKIFFFPPPPLSGALGEKKGGGCRRRLVHVGEGNNNTQGVGVLRALQRGARP 510
P GG T +F P PL+ G + RR HV T G G+ R GA P
Sbjct: 617 PPPTGGCTRSLFSAPDSPLAPRYGSTRPALVRRTCPHVSV--LPTGGAGLRRGASGGAVP 674
Query: 511 CTWQLH 528
W +H
Sbjct: 675 PDWHVH 680
>tr|Q4SSB9|Q4SSB9_TETNG Chromosome undetermined SCAF14473, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00013502001 PE=4 SV=1
Length = 1395
Score = 34.3 bits (77), Expect = 4.6
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +1
Query: 241 CGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAGGPTNKIFFFPPPPLSGALGEKKGGG 420
C +VL + RL+ CK ++++ G P + PPPP +G + GG
Sbjct: 599 CILVLLLIPRLI--------CKVSASVSGEDGGRGRPRPDLQPHPPPPPTGRADRQTSGG 650
Query: 421 CRRRLVHVGEGNNNTQGVGVLRALQRG 501
R H+G G +G G L+ G
Sbjct: 651 EVRAERHLGPGQGAPRGPGRTAQLRLG 677
>tr|A8JAN8|A8JAN8_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_152090 PE=4 SV=1
Length = 1161
Score = 34.3 bits (77), Expect = 4.6
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 346 GPTNKIFFFPPPPLSGAL--GEKKGGGCRRRLVHVGEGNNNTQGVGVLRALQRGARPCTW 519
GP I+ PPP SG+ G GGG G ++ VG LRA +GA P
Sbjct: 880 GPLMHIWLAPPPSNSGSSSSGSSSGGG--------NGGGSSGSSVGCLRAPLQGALPALC 931
Query: 520 QLHKPQG 540
+L P G
Sbjct: 932 RLLPPYG 938
>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
PE=4 SV=1
Length = 371
Score = 34.3 bits (77), Expect = 4.6
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = -2
Query: 246 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 97
P + NK V+P L EPPP LFP ++SSF + ++ +AL P + TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204
>tr|Q0S3Q9|Q0S3Q9_RHOSR Ferredoxin--NAD(+) reductase OS=Rhodococcus
sp. (strain RHA1) GN=RHA1_ro06050 PE=4 SV=1
Length = 393
Score = 33.9 bits (76), Expect = 6.1
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +1
Query: 325 AVPKRAGGPTNKIFFFPPPPLSGALGEKKGGGCRRRLVHVGEGNNNTQGVGV 480
A RAGG + P PL+ LGEK GG R +H GEG + GVG+
Sbjct: 156 AASMRAGGLDVVLVEPQPTPLASVLGEKIGGLVAR--LHTGEGVDLRAGVGL 205
>tr|Q9XUQ0|Q9XUQ0_CAEEL Protein T16G1.1, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=pqn-67
PE=2 SV=1
Length = 695
Score = 33.9 bits (76), Expect = 6.1
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +1
Query: 286 PQQCPCKGGSTINAVPKRAGGPTNKIFFFPPPPLSGALGEKKGGGCRRRLVHVGEGNNN 462
P + P GS N +R+G P PPP SGA G + GGG RR + N+N
Sbjct: 517 PMKPPSSSGSGSN---RRSGPPPPP----PPPRSSGANGNRNGGGGNRRNNNKNSSNSN 568
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