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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951216
Clone id TST38A01NGRL0010_M22
Library
Length 648
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_M22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TCGTTTCTCTGTGCGTTTGTTCCGAAATGAGTCCTCCAGGTGTCCTTCTAGCGTCTCCGG
CAGCACAGGCCGGGGCTCAACACTTATGCAGATTGGCGCAGAACCCTCAAGCATTTTCCA
TAGCTGGTAGAGCCCACCTTAAGGCTCTCTTCATGCCCGCAGCGTTATCGCCTTTAACGA
GCAAAGGGTTCCACGTCTCTGCTGCCTATAGCTCCAATAGATACAACAACAATTACAACG
ACTACTACGATGACATAGTCGTGGATATGGACCCGGAAAAGATGCTCAAACCAGGTGATC
CCAACACTTTCCAAGCAACCATCCGCAAGGCAATGCCTGTGGGTTACTGGGTTACTATGC
CAAGTGGGCGCGAGGCGTTCCTACCTGCCCAGGATCTAGGTTTTCTTGGTGGCCTTGAAA
AGCTCAGGTCTATCTTCCAGCCCGGACAAGAAGTGACTGTGCGAGTAGTCACCCGCGGTG
GCTCTGGTAGAGAGGTCCTTTCTTTGAAGAAACCTGACCCCAACAAACCTGACCCCCCAC
CCAAGCCCCTCAGGAAAGAGTTTGAAGGTGGCCGTCGGCGCCGCCCCTCCAACTATTGAT
AATTTCTAAAGGTTAGAAATCAGTCCCCTGTCATGCTTCCCTGCCTAA
■■Homology search results ■■ -
sp_hit_id Q5RBP8
Definition sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii
Align length 56
Score (bit) 32.3
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951216|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M22, 5'
         (633 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii GN=CFP PE=2 SV=1        32   2.1  
sp|Q64181|PROP_CAVPO Properdin OS=Cavia porcellus GN=CFP PE=2 SV=1     31   6.1  

>sp|Q5RBP8|PROP_PONAB Properdin OS=Pongo abelii GN=CFP PE=2 SV=1
          Length = 469

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 254 HSRGYGPGKDAQTR*SQHFPSNHPQGNACGLLGYYAKWARGVPTCP--GSRFSWWP 415
           HS  + P +    + S   PS  P G  C  L Y  +   G+P CP  GS   W P
Sbjct: 210 HSGTHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGSWGPWGP 265


>sp|Q64181|PROP_CAVPO Properdin OS=Cavia porcellus GN=CFP PE=2 SV=1
          Length = 470

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 269 GPGKDAQTR*---SQHFPSNHPQGNACGLLGYYAKWARGVPTCP 391
           GP K  +TR    S   PS +P GN C    Y  +   G+P CP
Sbjct: 211 GPHKPVETRSRTCSAPEPSKNPPGNPCPGTAYEQQSCAGLPPCP 254
tr_hit_id Q9I5S3
Definition tr|Q9I5S3|Q9I5S3_PSEAE Putative uncharacterized protein OS=Pseudomonas aeruginosa
Align length 30
Score (bit) 31.2
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951216|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_M22, 5'
         (633 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9I5S3|Q9I5S3_PSEAE Putative uncharacterized protein OS=Pseud...    31   6.5  
tr|A3LI80|A3LI80_PSEAE Putative uncharacterized protein OS=Pseud...    31   6.5  
tr|A1U751|A1U751_MARAV HAD-superfamily hydrolase, subfamily IA, ...    34   8.4  

>tr|Q9I5S3|Q9I5S3_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa GN=PA0643 PE=4 SV=1
          Length = 363

 Score = 31.2 bits (69), Expect(2) = 6.5
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 439 WKIDLSFSRPPR---KPRSWAGRNASRPLG 359
           W   +SFSRPP     P   AG NASRP G
Sbjct: 299 WGFPVSFSRPPSVMVNPMRAAGNNASRPWG 328



 Score = 21.6 bits (44), Expect(2) = 6.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 537 GGQVCWGQVSSKKG 496
           G Q+CWG  ++  G
Sbjct: 264 GTQICWGNTTTNVG 277


>tr|A3LI80|A3LI80_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_04546 PE=4 SV=1
          Length = 363

 Score = 31.2 bits (69), Expect(2) = 6.5
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 439 WKIDLSFSRPPR---KPRSWAGRNASRPLG 359
           W   +SFSRPP     P   AG NASRP G
Sbjct: 299 WGFPVSFSRPPSVMVNPMRAAGNNASRPWG 328



 Score = 21.6 bits (44), Expect(2) = 6.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 537 GGQVCWGQVSSKKG 496
           G Q+CWG  ++  G
Sbjct: 264 GTQICWGNTTTNVG 277


>tr|A1U751|A1U751_MARAV HAD-superfamily hydrolase, subfamily IA,
           variant 3 OS=Marinobacter aquaeolei (strain ATCC 700491
           / DSM 11845 / VT8) GN=Maqu_3751 PE=4 SV=1
          Length = 229

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +1

Query: 322 SARQCLWVTGLLCQVGARRSYLPRI*VFLVALKSSGLSS 438
           S R  L +TGL  +VG R  Y P +  FL AL+ +GL S
Sbjct: 71  SERLALDITGLKAEVGDRIGYRPHVTDFLAALRQAGLRS 109