DK951231 |
Clone id |
TST38A01NGRL0010_N13 |
Library |
TST38 |
Length |
435 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_N13. 5' end sequence. |
Accession |
DK951231 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
ATTGTGTGTCTTTGTGTGAGGCGAACAAGCTGCTGAGCCGCCGCTCTTCCTTTCCTCTTA TCTGTGTGTGCAGTGTTTCCGAAAGGGAGTACCATCCAGGCCCAGGTCGGAATCAGCTCT TTGTGCCAGGGCCCGTGAATGTCCCCGAGCAAGTTCTGCGCGCCATGAACCGCAACAATG AAGACTACCGCTCCCCCGCCATGCCTACCCTCTCCAAGTCCGTTCTTGAGGATATCAAAC GCATCTTCAAGACCACAACAGCTACTTCCTTCATCATTCCCACCACAGGAACTGGTGCTT GGGAGAGTGCTCTAACCAACACCCTGTCTCCAAGGGACAAAATCCTCGCCTTCAGGCTGG TTTTTTTTTTTCCCCCCCCCCCCCANNAGATGNAGNGGATAAAAAAAAAAGGGGGGGGGG GGGATGTGGAATGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
89 |
Score (bit) |
120.0 |
E-value |
2.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951231|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_N13, 5' (435 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 120 2e-27 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 86 9e-17 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 71 2e-12 sp|P38487|CREA_BACB0 Creatinase OS=Bacillus sp. (strain B-0618) ... 36 0.060 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 36 0.078 sp|P84187|SGAT_MAIZE Serine--glyoxylate aminotransferase (Fragme... 34 0.23 sp|P84188|SGAT_WHEAT Serine--glyoxylate aminotransferase (Fragme... 34 0.30 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 34 0.30 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 33 0.51 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 32 0.86 sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta''... 32 1.5 sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta''... 32 1.5 sp|Q9WVR3|SHIP2_RAT Phosphatidylinositol-3,4,5-trisphosphate 5-p... 31 1.9 sp|Q5ZIX8|JHD2A_CHICK JmjC domain-containing histone demethylati... 31 1.9 sp|Q5AAJ7|SWC4_CANAL SWR1-complex protein 4 OS=Candida albicans ... 31 2.5 sp|Q6P549|SHIP2_MOUSE Phosphatidylinositol-3,4,5-trisphosphate 5... 30 4.3 sp|P96156|CHID_VIBFU Chitodextrinase OS=Vibrio furnissii GN=endo... 30 5.6 sp|Q10850|Y2006_MYCTU Uncharacterized glycosyl hydrolase Rv2006/... 29 7.3 sp|Q1LSP5|CH60_BAUCH 60 kDa chaperonin OS=Baumannia cicadellinic... 29 9.6 sp|O77086|C3G_DROME Guanine nucleotide-releasing factor 2 OS=Dro... 29 9.6
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 120 bits (301), Expect = 2e-27 Identities = 56/89 (62%), Positives = 69/89 (77%) Frame = +3
Query: 87 EYHPGPGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXX 266 +Y GPGR+ LFVPGPVN+PE V+RAMNRNNEDYRSPA+P L+K++LED+K+IFK Sbjct: 2 DYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGT 61
Query: 267 XXXXXXXXXGAWESALTNTLSPRDKILAF 353 GAWESALTNTLSP D+I++F Sbjct: 62 PFLFPTTGTGAWESALTNTLSPGDRIVSF 90
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 85.5 bits (210), Expect = 9e-17 Identities = 41/85 (48%), Positives = 55/85 (64%) Frame = +3
Query: 102 PGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXX 281 PGRN LFVPGP N+P++V+RAM +ED+RS P+L+K + ED K++F Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 282 XXXXGAWESALTNTLSPRDKILAFR 356 G WESAL+NTL+ DK+LA R Sbjct: 62 ASGTGIWESALSNTLARGDKVLAAR 86
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 70.9 bits (172), Expect = 2e-12 Identities = 35/80 (43%), Positives = 45/80 (56%) Frame = +3
Query: 117 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 296 LF+PGP N+P+ V AMN ED RSP P + + ED+K+ FK G Sbjct: 7 LFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTG 66
Query: 297 AWESALTNTLSPRDKILAFR 356 AWESA+ NTL+ DK+L R Sbjct: 67 AWESAVENTLATGDKVLMSR 86
>sp|P38487|CREA_BACB0 Creatinase OS=Bacillus sp. (strain B-0618) PE=1 SV=3 Length = 411
Score = 36.2 bits (82), Expect = 0.060 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%) Frame = -2
Query: 248 EDAFDILKNGLGEGRHGGGAVV---------FIVAVHGAQNLLGDIHGPW-HKELIPTWA 99 ++ D++KNG GG AVV + VA+HG + ++ +I + H EL TW Sbjct: 169 DEEIDLIKNGARIADIGGAAVVEAIREGVPEYEVALHGTEAMVREIARTYPHAELRDTWI 228
Query: 98 WMVLPFGNTAHTDKRKGRAAAQQLVR 21 W F + +TD A +++L R Sbjct: 229 W----FQSGINTDGAHNWATSRKLQR 250
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 35.8 bits (81), Expect = 0.078 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = +3
Query: 117 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 296 L +PGP VPE L A+ ++ +R+ + V +++K + + G Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQ-TESDVLMLNVSGTG 65
Query: 297 AWESALTNTLSPRDKIL 347 A E+ + N LSP D+IL Sbjct: 66 AVEAGMINFLSPGDRIL 82
>sp|P84187|SGAT_MAIZE Serine--glyoxylate aminotransferase (Fragments) OS=Zea mays PE=1 SV=1 Length = 136
Score = 34.3 bits (77), Expect = 0.23 Identities = 24/63 (38%), Positives = 31/63 (49%) Frame = +3
Query: 159 RAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXGAWESALTNTLSPRD 338 RAMN SPA+P L+K +LED+K+ ALTNTLSP D Sbjct: 10 RAMN-------SPAVPALTKVLLEDVKK----------------------ALTNTLSPGD 40
Query: 339 KIL 347 ++L Sbjct: 41 RLL 43
>sp|P84188|SGAT_WHEAT Serine--glyoxylate aminotransferase (Fragments) OS=Triticum aestivum PE=1 SV=1 Length = 78
Score = 33.9 bits (76), Expect = 0.30 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = +3
Query: 117 LFVPGPVNVPEQVLRAM 167 LFVPGPVN+P+QVLR + Sbjct: 2 LFVPGPVNIPDQVLRTL 18
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 33.9 bits (76), Expect = 0.30 Identities = 18/77 (23%), Positives = 31/77 (40%) Frame = +3
Query: 117 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 296 + PGPV V +VLR M+ PA + +E ++ +F+ Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 297 AWESALTNTLSPRDKIL 347 E+ L + + P D +L Sbjct: 74 GIEAVLASVIEPEDDVL 90
>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 Length = 392
Score = 33.1 bits (74), Expect = 0.51 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3
Query: 111 NQLFV-PGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXX 287 NQL + PGP N+P +++ A S M + + E I+ +F+ Sbjct: 22 NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS 81
Query: 288 XXGAWESALTNTLSPRDKIL 347 A E+AL N L P D L Sbjct: 82 GHCALEAALVNVLEPGDSFL 101
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 32.3 bits (72), Expect = 0.86 Identities = 20/77 (25%), Positives = 36/77 (46%) Frame = +3
Query: 117 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 296 L +PGP VPE VL ++ ++ +RS + ++ IK + + G Sbjct: 7 LMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQ-TQNEVLILAASGTG 65
Query: 297 AWESALTNTLSPRDKIL 347 A E+ + N LS D+++ Sbjct: 66 AMEAGIINFLSAGDRVV 82
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RNQ2 |
Definition |
tr|A9RNQ2|A9RNQ2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
116 |
Score (bit) |
127.0 |
E-value |
2.0e-28 |
Report |
|