DK951238
Clone id TST38A01NGRL0010_N21
Library
Length 622
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_N21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
AAAGAGAGTACACGGTTTGTTAAGTCTACATGGCGGAAAGGTGTAGGATTGGAAACGCCA
CCACCAGCTGACGCGACTGCATCCGGGTCTGTTGAGATGGAAAAAGGTAGTGGTAGTGCT
ACAATGGCAAATGCTCCTAGTGTAACATCACCGGTTCAAGTTGAAGTAAAAAGACCAGAG
CTACGAGGACCACCATTGAAACCACCCCTAAAGCCACTTCCCAACCAAGAGCAGCCTCAA
AAGAAACAGGTCATTTTAAAGGATATAGGAGCAAAGGATCAGGGTGCTGGGGCAGGAAGG
TCAGCCACAGCAGGAAAGGCTGGCAGTAAGCCTGCAGCTTCAGCACCTGCTGATCCTTTT
CCTGGACCTGTGAAGGCACGAAAAGCAGGTGCTTCGAAGGGGAAGGACAGAAAGGAAGAT
TGGCGAAAGAAATCTTCTTCCACAGATGGCTTGAAAAGGAGAGTGGGTACAAAGGCAAGT
AAGCCTGATGATGCGGCGGATGTAGATATACCAGGTACTGCTGTCGGAACTCGTAGGGGT
GGAAGGAAGATGACCAAAGCAACCCGGAAAGCTGCCCGAGAGCAAGCGGCACTTGCTGCT
GCACCTGTGAAAGTAGATATAT
■■Homology search results ■■ -
sp_hit_id Q59VP1
Definition sp|Q59VP1|H2B2_CANAL Histone H2B.2 OS=Candida albicans
Align length 37
Score (bit) 32.0
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951238|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_N21, 5'
(622 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q59VP1|H2B2_CANAL Histone H2B.2 OS=Candida albicans GN=HTB2 P... 32 2.6
sp|P48989|H2B1_CANAL Histone H2B.1 OS=Candida albicans GN=HTB1 P... 32 2.6
sp|Q0V8T8|CTP5B_MOUSE Contactin associated protein like 5-2 OS=M... 30 7.7

>sp|Q59VP1|H2B2_CANAL Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3
SV=3
Length = 130

Score = 32.0 bits (71), Expect = 2.6
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1

Query: 373 KARKAGASKGKDRKEDWRKKSSSTDGLKRRVGTKASK 483
KA K ASK K+ KK++STDG K+R TKA K
Sbjct: 4 KAEKKPASKAPAEKKPAAKKTASTDGAKKR--TKARK 38


>sp|P48989|H2B1_CANAL Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3
SV=3
Length = 130

Score = 32.0 bits (71), Expect = 2.6
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1

Query: 373 KARKAGASKGKDRKEDWRKKSSSTDGLKRRVGTKASK 483
KA K ASK K+ KK++STDG K+R TKA K
Sbjct: 4 KAEKKPASKAPAEKKPAAKKTASTDGAKKR--TKARK 38


>sp|Q0V8T8|CTP5B_MOUSE Contactin associated protein like 5-2 OS=Mus
musculus GN=Cntnap5b PE=2 SV=1
Length = 1292

Score = 30.4 bits (67), Expect = 7.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2

Query: 594 KCRLLSGSFPGCFGHLXXXXXXXXXXTWYIYIRRIIRLTCLCTHSPFQAICGRRFLSPIF 415
+ ++ SG PGC GH + + I TC CT+SP++ ++ +S +F
Sbjct: 932 RAKITSGVRPGCAGHCNSYGRNCQNGGKCV--EKHIGYTCDCTNSPYEGPFCKKEISALF 989

Query: 414 LS 409
S
Sbjct: 990 YS 991


tr_hit_id A5B2X2
Definition tr|A5B2X2|A5B2X2_VITVI Translation initiation factor IF-2 OS=Vitis vinifera
Align length 139
Score (bit) 39.7
E-value 0.15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951238|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_N21, 5'
(622 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5B2X2|A5B2X2_VITVI Translation initiation factor IF-2 OS=Vit... 40 0.15
tr|B0X4F4|B0X4F4_CULQU Pipsqueak OS=Culex quinquefasciatus GN=Cp... 36 2.1
tr|A8XSR7|A8XSR7_CAEBR Putative uncharacterized protein OS=Caeno... 34 8.0

>tr|A5B2X2|A5B2X2_VITVI Translation initiation factor IF-2 OS=Vitis
vinifera GN=VITISV_024584 PE=3 SV=1
Length = 1005

Score = 39.7 bits (91), Expect = 0.15
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Frame = +1

Query: 250 VILKDIGAKDQGAG-----AGRXXXXXXXXXXXXXXXXXXXXXXXVKARKAGASKGKDR- 411
VILKD+GA + +G +G+ +A A GK
Sbjct: 255 VILKDVGAAPKSSGIDETDSGKTRERKPILIDKFASKRPVVDPMIAQAVLAPPKPGKGPV 314

Query: 412 ----KEDWRKKSSSTDGLKRRV--GTKASKPDDAA---DVDIPGTAVGTRRGGRKMXXXX 564
K+D+RKK++ST G +RR+ PDD +V IPG A T R GRK
Sbjct: 315 PGKFKDDYRKKNASTGGSRRRMVAANDMEIPDDETSELNVSIPGAA--TARKGRKWSKAS 372

Query: 565 XXXXXXXXXXXXXPVKVDI 621
PVKV+I
Sbjct: 373 RKAARLQAAKDAAPVKVEI 391


>tr|B0X4F4|B0X4F4_CULQU Pipsqueak OS=Culex quinquefasciatus
GN=CpipJ_CPIJ013751 PE=4 SV=1
Length = 543

Score = 35.8 bits (81), Expect = 2.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1

Query: 535 YEFRQQYLVYLHPPHHQAYLPLYPLSFSSHLWKKISFAN 419
++ + Q ++YLHPP HQ ++ L HL +S+A+
Sbjct: 101 HQIQHQQIIYLHPPQHQQHVVLIDQHSQQHLHSPVSYAS 139


>tr|A8XSR7|A8XSR7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG17990 PE=4 SV=1
Length = 807

Score = 33.9 bits (76), Expect = 8.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1

Query: 499 PPHHQAYLPLYPLSFSSHLWKKISFANLPFCPSP 398
PPH Q+Y P P+SF++ + K+ S ++ PSP
Sbjct: 235 PPHQQSYQPQEPMSFAACVRKQPSIESMSVSPSP 268