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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951291
Clone id TST38A01NGRL0011_A07
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_A07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTGATCAAA
CAGATGAGGCTTTGCCTTTACCATCAATCAATCACTAACCAAGTATAAGGAAAAACTTTG
CTTTACACTATTACATCAGGGTGCAGTTGTTTGCATTTTCATCACTAAACATGTGTGTGG
CGTAGTCCTCTGCGGACTCCATATCCACCGAATATTCACTAGTTTCAACTAGGACCATGG
GAGGAGGTGCCATGTGTCTGTTCGCTGTGCTCCTACTCGTTGATGCTTCAACAAAGTGAT
GCTCCAAATTCGTCTCCAAGCTCTCAGATTTTCCTCCTCCTCCTCCTCCTGCCTTCTTCT
TACTAGAGCTATTACTATCCTTCTCTACATCTCCAGACTTCTTGTTGTCAGGAGAAGCAC
CTTCTAATTCACCAGCTATGTCAGAATTTTTAGTGTTTTTGCTGTTGGCATTTGGTGTTC
CACCTCCATTGTCGGTTTTGTTGTTGCTGTTGTTTGAAGATGACACTGCACCTCCATTCG
AGTGCTTGGCATCTCCATTAGCCTCCATGGGTTTAGCTTTGTTGTTATTTTCAACAGACT
TGCTTACGTTATCAGCAACCCCGCTGCTGGACTTCTT
■■Homology search results ■■ -
sp_hit_id Q9Y825
Definition sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protein C25H1.06 OS=Schizosaccharomyces pombe
Align length 60
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951291|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A07, 5'
         (584 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protei...    32   2.3  
sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplast...    30   6.7  

>sp|Q9Y825|YEC6_SCHPO Uncharacterized WD repeat-containing protein
           C25H1.06 OS=Schizosaccharomyces pombe GN=SPAC25H1.06
           PE=2 SV=1
          Length = 408

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 22  PLPSINH*PSIRKNFALHYYIRVQLFAFSSLNMCVA*SSADSISTEYSLVSTRTMGGGAM 201
           PL S+ H PSI   FAL     +QL+   +LN  V  +S D       + S  T+GG ++
Sbjct: 277 PLFSVRHNPSIATLFALGSEQDLQLWDLRNLNKSVFNTSEDLSDNRLKVPSRLTLGGTSL 336


>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic
           OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1
          Length = 297

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 303 LLTRAITILLYISRLLVVRRSTF*FTSYVRIFSVFAVGIWCST 431
           L+ R I +LLY+ RL V R         + I   F   IWC T
Sbjct: 112 LVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKT 154
tr_hit_id O81464
Definition tr|O81464|O81464_ARATH Putative metal-binding isoprenylated protein OS=Arabidopsis thaliana
Align length 46
Score (bit) 36.6
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951291|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A07, 5'
         (584 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O81464|O81464_ARATH Putative metal-binding isoprenylated prot...    37   1.1  
tr|A9S1V8|A9S1V8_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.0  
tr|B5DUW0|B5DUW0_DROPS GA28123 OS=Drosophila pseudoobscura pseud...    33   9.0  

>tr|O81464|O81464_ARATH Putative metal-binding isoprenylated protein
           OS=Arabidopsis thaliana GN=AT4g08570 PE=2 SV=1
          Length = 150

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -1

Query: 218 STANRHMAPPPMVLVETSEYSVDMESAEDYATHMFSDENANNCTLM 81
           S A    APP MV       SV+  + +D  T MFSDEN N+C +M
Sbjct: 105 SQAYDKKAPPNMVRKVPDTASVNETTVDDSYTIMFSDENPNSCAIM 150


>tr|A9S1V8|A9S1V8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_73473 PE=4 SV=1
          Length = 1624

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 266 LETNLEHHFVEASTSRSTANRHMAPPPMVLVETSEYSVDMESAE 135
           ++ ++ + F+E STS+S AN HM P P   +E    S+ + S E
Sbjct: 322 IQQSIGNQFIELSTSQSLANEHMQPSPQQFMENE--SMQLASQE 363


>tr|B5DUW0|B5DUW0_DROPS GA28123 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA28123 PE=4 SV=1
          Length = 322

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 266 LETNLEHHFVEASTSRSTANRHMAPPPMVLVETSEYSVDMESAEDYATHMFSDENANNCT 87
           +ET    H  E   +++    H +P P V+V  SEY+ ++E      T + S+   + C 
Sbjct: 220 IETRTFVHHAEDDVAQAPRRTHTSPLPAVVVSISEYTREVEPPSAVDTTILSENPDHTCD 279

Query: 86  L 84
           L
Sbjct: 280 L 280