DK951293 |
Clone id |
TST38A01NGRL0011_A09 |
Library |
TST38 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_A09. 5' end sequence. |
Accession |
DK951293 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AGATTGTCTCATCATTCTTGGGATCTCCTTCGCCTCCGCGATGGTCTGCGAAGCCATATC CTGGATTCTGATCTACAGAACGGCATCCTACAAAAGTCTCCGCTCCAGCATTGACCGCGC GTCCAGGAAGTTAGAGGTGATGAAGGGGACGAGCACTGGTGTTTCCGCAGCCTCGTCCAG CAAGAGCTCTAAGGTCAAGAAGATGGATCGCCTTGAGAACAGCCTTAAGGAGTCGAGTCG AGACCTCTCCTTTGCTAAATTCAAGTCGGGAGGCGTCGTCGCCATCGTTCTGATCGTCGT CTTCGGCTTGCTTAACTCGCTTTTTGAAGGTAAATCTGTTGCTAAGCTTCCTTTCTCCCC TGTTCCATTCGTGCAGAGGATGAGTCATCGCGGGCTTCATGGTGATGACCCCACCGATTG TGCTATGGTTTTTCTCTACTTTCTTTGTTCTGTAAGCATCAGATCTAATCTGCAAAAGCT TCTAGGATTTGCTCCTCCTCGAAATGCTGCAAGCACAGGCTTGTTTCCCATGCCTGATTC AAAAACTAAGTGAACCATGAAGCTCTTAAAAGCGTTGTCCTGGGGATTAAGCCCCTTGTA CATTAGAGAAAATTTGAAGGTTATATTCCCGGAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5I0H4 |
Definition |
sp|Q5I0H4|TMCO1_RAT Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus |
Align length |
183 |
Score (bit) |
146.0 |
E-value |
1.0e-34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NN35 |
Definition |
tr|A9NN35|A9NN35_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
180 |
Score (bit) |
252.0 |
E-value |
1.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951293|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_A09, 5' (632 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NN35|A9NN35_PICSI Putative uncharacterized protein OS=Picea... 252 1e-65 tr|A7PVZ3|A7PVZ3_VITVI Chromosome chr8 scaffold_34, whole genome... 237 5e-61 tr|A9TI54|A9TI54_PHYPA Predicted protein OS=Physcomitrella paten... 233 9e-60 tr|Q4TZT9|Q4TZT9_GOSHI Fb27 OS=Gossypium hirsutum PE=2 SV=1 232 1e-59 tr|B7FGM9|B7FGM9_MEDTR Putative uncharacterized protein OS=Medic... 232 1e-59 tr|Q9FG04|Q9FG04_ARATH Dbj|BAA86974.1 (AT5g06660/F15M7_19) OS=Ar... 231 3e-59 tr|Q9LHL8|Q9LHL8_ARATH Arabidopsis thaliana genomic DNA, chromos... 230 5e-59 tr|Q8LE05|Q8LE05_ARATH Putative uncharacterized protein OS=Arabi... 230 6e-59 tr|Q8LDF3|Q8LDF3_ARATH Putative uncharacterized protein OS=Arabi... 229 1e-58 tr|B6TGS2|B6TGS2_MAIZE Fb27 OS=Zea mays PE=2 SV=1 227 5e-58 tr|Q6UA10|Q6UA10_GOSBA Fiber protein Fb27 OS=Gossypium barbadens... 224 3e-57 tr|A9PG09|A9PG09_POPTR Putative uncharacterized protein OS=Popul... 221 2e-56 tr|Q6ASU6|Q6ASU6_ORYSJ Os03g0721400 protein OS=Oryza sativa subs... 219 8e-56 tr|A2XLH6|A2XLH6_ORYSI Putative uncharacterized protein OS=Oryza... 219 8e-56 tr|A8WNF6|A8WNF6_CAEBR Putative uncharacterized protein OS=Caeno... 149 1e-34 tr|B5XGE6|B5XGE6_SALSA Transmembrane and coiled-coil domain-cont... 146 1e-33 tr|Q19714|Q19714_CAEEL Protein F22B5.10, confirmed by transcript... 145 2e-33 tr|B3RNF0|B3RNF0_TRIAD Putative uncharacterized protein OS=Trich... 145 2e-33 tr|B5X7D4|B5X7D4_SALSA Transmembrane and coiled-coil domain-cont... 145 2e-33 tr|B4JAM2|B4JAM2_DROGR GH10893 OS=Drosophila grimshawi GN=GH1089... 145 2e-33 tr|B4KE66|B4KE66_DROMO GI13086 OS=Drosophila mojavensis GN=GI130... 145 3e-33 tr|B4LS16|B4LS16_DROVI GJ11625 OS=Drosophila virilis GN=GJ11625 ... 144 4e-33 tr|B5X9M1|B5X9M1_SALSA Transmembrane and coiled-coil domain-cont... 144 6e-33 tr|A7RN03|A7RN03_NEMVE Predicted protein OS=Nematostella vectens... 144 6e-33 tr|B4N0X9|B4N0X9_DROWI GK24167 OS=Drosophila willistoni GN=GK241... 142 1e-32 tr|B3MNQ9|B3MNQ9_DROAN GF14694 OS=Drosophila ananassae GN=GF1469... 142 1e-32 tr|Q4SRU7|Q4SRU7_TETNG Chromosome undetermined SCAF14488, whole ... 142 2e-32 tr|Q6DGW9|Q6DGW9_DANRE Novel protein similar to H.sapiens TMCO1,... 142 2e-32 tr|Q9VJ11|Q9VJ11_DROME CG10470 OS=Drosophila melanogaster GN=CG1... 141 4e-32 tr|B4Q9F2|B4Q9F2_DROSI GD24177 OS=Drosophila simulans GN=GD24177... 141 4e-32
>tr|A9NN35|A9NN35_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 188
Score = 252 bits (644), Expect = 1e-65 Identities = 128/180 (71%), Positives = 143/180 (79%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D LIIL IS ASA VCE ISW+LIYRT +YKSLRS+IDR S+KLE + Sbjct: 12 DSLIILSISLASAFVCEGISWLLIYRTPNYKSLRSTIDRTSKKLETLKTSAPSTKKSKTK 71
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 DR E SLKESSRDLSF+KFKSGGVVAIVLI+VFGLLNSLFEGK+VAKLPF+P Sbjct: 72 KK------DRFETSLKESSRDLSFSKFKSGGVVAIVLIIVFGLLNSLFEGKAVAKLPFTP 125
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAASTGLFPMPDS 541 +PF+Q+MSHRGL GDDPTDCAMVF YFLCS+SIRSNLQK LGFAPPR AA GLFP+PD+ Sbjct: 126 IPFIQKMSHRGLSGDDPTDCAMVFFYFLCSMSIRSNLQKFLGFAPPRGAAGAGLFPVPDT 185
>tr|A7PVZ3|A7PVZ3_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025411001 PE=4 SV=1 Length = 193
Score = 237 bits (604), Expect = 5e-61 Identities = 119/179 (66%), Positives = 138/179 (77%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GIS +A++CEAISW+LIYRT SYK+LRSSIDRA++KLE M Sbjct: 14 DSLAVVGISICTAIICEAISWLLIYRTTSYKTLRSSIDRAAKKLETMKTTSDAQKFTKKS 73
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 MDR+E SLKESSRDLS KFKSG VVA+VL VFGLLNSLFEGKSVAKLPF P Sbjct: 74 KTKK---MDRVETSLKESSRDLSLFKFKSGAVVALVLFAVFGLLNSLFEGKSVAKLPFVP 130
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAASTGLFPMPD 538 + V +MSHRGL+G+DPTDC+M FLYFLCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 131 ISIVMKMSHRGLNGNDPTDCSMAFLYFLCSISIRTNLQKFLGFSPPRGAAGAGLFPMPD 189
>tr|A9TI54|A9TI54_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195309 PE=4 SV=1 Length = 189
Score = 233 bits (593), Expect = 9e-60 Identities = 118/179 (65%), Positives = 138/179 (77%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L+I+ IS SA++CE ISW+LIYRT +YKSLRS+IDR S+K+E M Sbjct: 8 DALLIVAISVVSAIICEGISWVLIYRTTNYKSLRSTIDRTSKKIETMKSQTPASAIAAAK 67
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 MDR E SLKESSRDLS +KFKSG VVA+VL VVFGLL+SLFEGK+VAKLPFSP Sbjct: 68 KSKSKK-MDRYELSLKESSRDLSLSKFKSGAVVALVLFVVFGLLSSLFEGKAVAKLPFSP 126
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAASTGLFPMPD 538 +P +Q+MSHRGL GDD TDC+MVFLYFLCSVSIRSNLQK LGF+PPR AA GLF +P+ Sbjct: 127 IPLIQKMSHRGLPGDDATDCSMVFLYFLCSVSIRSNLQKFLGFSPPRGAAGQGLFAIPE 185
>tr|Q4TZT9|Q4TZT9_GOSHI Fb27 OS=Gossypium hirsutum PE=2 SV=1 Length = 194
Score = 232 bits (592), Expect = 1e-59 Identities = 118/179 (65%), Positives = 137/179 (76%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++ ISF +A+VCEAISW+LIYRT YKSL+SSID+A++KLE+M Sbjct: 14 DSLTVVAISFCTAIVCEAISWLLIYRTNPYKSLKSSIDKAAKKLEIMKTDQNPSKLSTKK 73
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E SLKESSRDLS KFKSG VVA+VLIVVFG LNSLFEGK VAKLPF P Sbjct: 74 SKTKK--IDRVETSLKESSRDLSLFKFKSGAVVALVLIVVFGFLNSLFEGKVVAKLPFKP 131
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAASTGLFPMPD 538 + V +MSHRGL GDD TDC+MVFLYFLCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 132 IGIVMKMSHRGLKGDDSTDCSMVFLYFLCSISIRTNLQKFLGFSPPRGAAGAGLFPMPD 190
>tr|B7FGM9|B7FGM9_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 189
Score = 232 bits (592), Expect = 1e-59 Identities = 121/179 (67%), Positives = 138/179 (77%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GISF +A+VCEAISW+LIYRT SYK+LRSSID+AS+KLE M Sbjct: 12 DGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSK 71
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E SLKESSRDLS KFKSGGVVA+VL VVFGLLNSLFEGK VAKLPF P Sbjct: 72 TKK----IDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKP 127
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAASTGLFPMPD 538 V +MSHRGL G+DPTDC+M FLYFLCS+SIR+NLQK LGFAPPR A + GLFPMPD Sbjct: 128 FGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGA-GLFPMPD 185
>tr|Q9FG04|Q9FG04_ARATH Dbj|BAA86974.1 (AT5g06660/F15M7_19) OS=Arabidopsis thaliana GN=At5g06660 PE=2 SV=1 Length = 196
Score = 231 bits (589), Expect = 3e-59 Identities = 120/180 (66%), Positives = 139/180 (77%), Gaps = 1/180 (0%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GISF +A+VCEAISWILIYRT+SYKSL+SSID+AS+KLE M Sbjct: 15 DSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSKLTNKK 74
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E+SLKESSRDLS KFKSG VVA+VL VVFGLLNSLFEGK VAKLPF P Sbjct: 75 SKTKK--IDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAAST-GLFPMPD 538 + V++MSHRGL GDD TDC+M FLY LCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 133 ITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPD 192
>tr|Q9LHL8|Q9LHL8_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18 (Putative uncharacterized protein At3g12030) (Putative uncharacterized protein At3g12030/T21B14_117) (Putative uncharacterized protein T21B14.22) OS=Arabidopsis thaliana GN=At3g12030/T21B14_117 PE=2 SV=1 Length = 196
Score = 230 bits (587), Expect = 5e-59 Identities = 119/180 (66%), Positives = 138/180 (76%), Gaps = 1/180 (0%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GISF +A+VCEAISWILIYRT+SYKSL+ SID+A++KLE M Sbjct: 15 DSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSIKK 74
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E SLKESSRDLS KFKSG VVA+VL VVFGLLNSLFEGK VAKLPF P Sbjct: 75 SKTKK--IDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAAST-GLFPMPD 538 + V++MSHRGL GDDPTDC+M FLY LCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 133 ITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPD 192
>tr|Q8LE05|Q8LE05_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 196
Score = 230 bits (586), Expect = 6e-59 Identities = 119/180 (66%), Positives = 137/180 (76%), Gaps = 1/180 (0%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GISF +A+VCEAISWILIYRT+SYKSL+ SID+A++KLE M Sbjct: 15 DSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSSKLSIKK 74
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E SLKESSRDLS KFKSG VVA+VL VVFGLLNSLFEGK VAKLPF P Sbjct: 75 SKTKK--IDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAAST-GLFPMPD 538 + V +MSHRGL GDDPTDC+M FLY LCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 133 ITIVNKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPD 192
>tr|Q8LDF3|Q8LDF3_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 196
Score = 229 bits (583), Expect = 1e-58 Identities = 119/180 (66%), Positives = 138/180 (76%), Gaps = 1/180 (0%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GIS +A+VCEAISWILIYRT+SYKSL+SSID+AS+KLE M Sbjct: 15 DSLTVVGISLCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMKTDNPSSKLTNKK 74
Query: 182 XXXXXXXMDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAKLPFSP 361 +DR+E+SLKESSRDLS KFKSG VVA+VL VVFGLLNSLFEGK VAKLPF P Sbjct: 75 SKTKK--IDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHP 132
Query: 362 VPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAAST-GLFPMPD 538 + V++MSHRGL GDD TDC+M FLY LCS+SIR+NLQK LGF+PPR AA GLFPMPD Sbjct: 133 ITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPD 192
>tr|B6TGS2|B6TGS2_MAIZE Fb27 OS=Zea mays PE=2 SV=1 Length = 201
Score = 227 bits (578), Expect = 5e-58 Identities = 117/186 (62%), Positives = 144/186 (77%), Gaps = 7/186 (3%) Frame = +2
Query: 2 DCLIILGISFASAMVCEAISWILIYRTASYKSLRSSIDRASRKLEVMXXXXXXXXXXXXX 181 D L ++GIS A+A++CEA+SW+LIYRTA+Y SLR+SI+R SRKL+ M Sbjct: 12 DSLSVVGISAATAVLCEAMSWLLIYRTATYNSLRASIERHSRKLDAMKSGSTSASSGTAA 71
Query: 182 XXXXXXX-----MDRLENSLKESSRDLSFAKFKSGGVVAIVLIVVFGLLNSLFEGKSVAK 346 MDR+E SLK+++R+LS AK KSG VVA++L VVFGLLNSLFEG++VAK Sbjct: 72 SSAQPASSRAKKMDRVETSLKDAARELSLAKLKSGAVVAVMLFVVFGLLNSLFEGRTVAK 131
Query: 347 LPFSPVPFVQRMSHRGLHGDDPTDCAMVFLYFLCSVSIRSNLQKLLGFAPPRNAAST--G 520 LPF+P+P VQRMSHRGL G+DPTDC+MVFLYFLCS+SIR+NLQKLLGFAPPR AA+ G Sbjct: 132 LPFAPIPLVQRMSHRGLPGNDPTDCSMVFLYFLCSMSIRTNLQKLLGFAPPRAAAAAGGG 191
Query: 521 LFPMPD 538 LFPMPD Sbjct: 192 LFPMPD 197
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