DK951301
Clone id TST38A01NGRL0011_A17
Library
Length 700
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_A17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
AGGAGAATGAGCTAAATGGTCTTCCTCGTCTGCTCCGCGTCTTGCTGGTGAATATAGCCA
ACAAGCGGCAAAGAGAAAGAGAGAGTTTCTGATTGCAAACTTTTTTTTTTTTTGAGGTAG
ACGAAGAGGAAAAATCGTTGGGCGCCTTTTTCCTGCTGGTGTGCTTGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCCTCAATGGTGCTAGCAC
AAGATCCCTACCATCGCCTGCGTTTTCGAAGAATTTGCTTTGCATGTGTCTTGCTGTTTC
AGCTGTCATGGATTGTGCCATGCACATATTTTCTGCTATGGCAAAGCTCGATGCCAAGGA
TGCTCATACTGCAAGATCGGAATGCAAGTAGCAGAATCAATACTCAGGGGTTTTCTGGTG
CCATCAAAGTTCTCCGTGGCCATGATCATATGGTGTTGAACAAGCTATATGATAATTGGA
ACGTTTTTCTGCCAAAACTGAAGGAAAGGTTGGCATTAAAGGGCTTTGTGCAATCACCTG
AAAGAACTTGCTTCCTTTGGCTTTCAGAATGCTTTTCATTCGGAAAACATGAGAGGATCT
TACAAATAGTGAAAGAAGCCATTGGACCAAGAGTTTTACTATATGGAGTGACGGTTTGGA
AGGGCAGGAATGAGGCTCTGCAGCGATTTCATAGAAATGC
■■Homology search results ■■ -
sp_hit_id A8MQ03
Definition sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens
Align length 37
Score (bit) 32.0
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951301|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A17, 5'
(700 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens G... 32 3.3
sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=... 31 5.6
sp|Q86UW1|OSTA_HUMAN Organic solute transporter subunit alpha OS... 31 5.6
sp|Q9ERE9|JIP2_MOUSE C-jun-amino-terminal kinase-interacting pro... 31 7.4
sp|Q13387|JIP2_HUMAN C-jun-amino-terminal kinase-interacting pro... 31 7.4

>sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens
GN=C9orf169 PE=2 SV=1
Length = 144

Score = 32.0 bits (71), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1

Query: 268 EEFALHVSCCFSCHGLCHAHIFCYGKARCQGCSYCKI 378
++ A H CC CH CH FC RC C C I
Sbjct: 112 DDIAHHCCCCPCCH-CCHCPPFC----RCHSCCCCVI 143


>sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2
SV=1
Length = 306

Score = 31.2 bits (69), Expect = 5.6
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3

Query: 234 LAQDPYHRL-RFRRICFACVLLFQLSWIVPCTY--FLLWQSS 350
L + YH + FR++ A +++ +W+VP FL+W++S
Sbjct: 147 LGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNS 188


>sp|Q86UW1|OSTA_HUMAN Organic solute transporter subunit alpha
OS=Homo sapiens GN=OSTA PE=2 SV=1
Length = 340

Score = 31.2 bits (69), Expect = 5.6
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -2

Query: 648 LHIVKLLVQWLLSLFVRSSHVFRMKSILKAKGSKFFQVIAQSPLMPTFPSVLAEKRSNYH 469
L + LL W L + R + + + + AK + F ++ + L P+ SVLA +
Sbjct: 225 LGVSTLLALWTLGIISRQARLHLGEQNMGAKFALFQVLLILTALQPSIFSVLA---NGGQ 281

Query: 468 IACSTPY 448
IACS PY
Sbjct: 282 IACSPPY 288


>sp|Q9ERE9|JIP2_MOUSE C-jun-amino-terminal kinase-interacting
protein 2 OS=Mus musculus GN=Mapk8ip2 PE=1 SV=1
Length = 830

Score = 30.8 bits (68), Expect = 7.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -2

Query: 675 PHSCPSKPSLHIVKLLVQWLLSLFVRSSHVFRMKSI----LKAKGSKFFQVIAQSPLMPT 508
P SC + SL VKL + F R SH F+MK+I + S +F I + PL+
Sbjct: 728 PASCDLEISLRGVKLSLSGGGPEFQRCSHFFQMKNISFCGCHPRNSCYFGFITKHPLLSR 787

Query: 507 F 505
F
Sbjct: 788 F 788


>sp|Q13387|JIP2_HUMAN C-jun-amino-terminal kinase-interacting
protein 2 OS=Homo sapiens GN=MAPK8IP2 PE=2 SV=2
Length = 824

Score = 30.8 bits (68), Expect = 7.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -2

Query: 675 PHSCPSKPSLHIVKLLVQWLLSLFVRSSHVFRMKSI----LKAKGSKFFQVIAQSPLMPT 508
P SC + SL VKL + F R SH F+MK+I + S +F I + PL+
Sbjct: 722 PASCDLEISLRGVKLSLSGGGPEFQRCSHFFQMKNISFCGCHPRNSCYFGFITKHPLLSR 781

Query: 507 F 505
F
Sbjct: 782 F 782


tr_hit_id Q2QNE9
Definition tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 34.7
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951301|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A17, 5'
(700 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed OS... 35 6.1
tr|A3CIJ9|A3CIJ9_ORYSJ Putative uncharacterized protein OS=Oryza... 35 6.1
tr|Q2GR87|Q2GR87_CHAGB Putative uncharacterized protein OS=Chaet... 35 6.1

>tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed
OS=Oryza sativa subsp. japonica GN=LOC_Os12g38040 PE=4
SV=2
Length = 641

Score = 34.7 bits (78), Expect = 6.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1

Query: 292 CCFSCHGLCHAHIFCYGKARCQGCSY 369
CCF+C GL H C G RC C Y
Sbjct: 131 CCFNCLGLGHQKSACPGSTRCYNCWY 156


>tr|A3CIJ9|A3CIJ9_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_035121 PE=4 SV=1
Length = 983

Score = 34.7 bits (78), Expect = 6.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1

Query: 292 CCFSCHGLCHAHIFCYGKARCQGCSY 369
CCF+C GL H C G RC C Y
Sbjct: 131 CCFNCLGLGHQKSACPGSTRCYNCWY 156


>tr|Q2GR87|Q2GR87_CHAGB Putative uncharacterized protein
OS=Chaetomium globosum GN=CHGG_09517 PE=4 SV=1
Length = 1101

Score = 34.7 bits (78), Expect = 6.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1

Query: 277 ALHVSCCFSCHGLCHAHIFCYGKARCQGCS 366
AL V+ C+ C H H FC GKA C C+
Sbjct: 128 ALQVTQCYKCWRWGHTHRFCKGKATCPRCA 157