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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951306
Clone id TST38A01NGRL0011_A23
Library
Length 690
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_A23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAGGAGCTTCTGCCACGTGTCAACCGGGGGATATGTAGATATATATATATATTTTTGTT
TTCCTTTCTTAACATGAAAGGTAATAGACGATGAAATAACGTCGGTCTAAAATCTATCGT
TTTCCTTTGGAGAGAGTGAGTGGGAATCATCCCGCCAGGGTTCGAAACTCACTCCCCTTT
CGCTTCTCTGCGTGGGCGGAGCTTCGAGCAACTGAACGAAGGGCTTTGCTTAAGCGGAAT
TTCCCTCTTAGGGCTACCGGTCAAAAGCTTCAGGCAGCTCAGACGCTCCTTGAGAAGGAG
ATGCTGCAGATTCTGTTGTAGGTGTGTTCTCTTCACTCCGGTGAAGTGAAGACCGGTGAT
ATGTACAAAGATAGGGGTGATGGGCGTGGTGGAAGCCGTGAATCTATCGATGCTAAGAAG
CGCATTGAGGAGACTCTAGAGAGGACATCTCCTTCGACATCCAAGGGAAATGCAAGGGAA
AAAGATCGTGTTTCTATGGTGCCTGCATCAACTGGTAGACGCCTAGGCTCTGTTGACTTA
AGGCCTACATTTGACAAGACCAAGTATGCAGACGATGGCGAAGAATCAGAGACTGACAGC
GAAGAATCGGATGTTAGTGGATCAGATGGTGACGACACTTCTTGGGTTTCTTGGTTTTGC
GGTTTGAGAGGGAATGAGTTCTTTTGTGAG
■■Homology search results ■■ -
sp_hit_id P40228
Definition sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana
Align length 107
Score (bit) 36.2
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A23, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidops...    36   0.17 
sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus l...    33   1.9  
sp|O76485|CSK2B_SPOFR Casein kinase II subunit beta OS=Spodopter...    33   1.9  
sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norv...    33   1.9  
sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolag...    33   1.9  
sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa ...    33   1.9  
sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus muscu...    33   1.9  
sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapi...    33   1.9  
sp|P08182|CSK2B_DROME Casein kinase II subunit beta OS=Drosophil...    33   1.9  
sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rer...    33   1.9  
sp|P67869|CSK2B_CHICK Casein kinase II subunit beta OS=Gallus ga...    33   1.9  
sp|P28548|CSK2B_CAEEL Casein kinase II subunit beta OS=Caenorhab...    33   1.9  
sp|P67868|CSK2B_BOVIN Casein kinase II subunit beta OS=Bos tauru...    33   1.9  
sp|Q91678|GAT6A_XENLA GATA-binding factor 6-A OS=Xenopus laevis ...    32   4.2  
sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 O...    30   9.4  
sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidop...    30   9.4  

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis
           thaliana GN=CKB1 PE=1 SV=1
          Length = 287

 Score = 36.2 bits (82), Expect = 0.17
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
 Frame = +1

Query: 394 SRESIDAKKRIEETLERTSPSTSKG-NAREKDRVS-------MVPASTGRRLGSVDLRPT 549
           SR  +  +KRI + LER SPSTS+  N + K  V+       ++       +   D R  
Sbjct: 10  SRPEVVDRKRINDALERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSA 69

Query: 550 FDKTKYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
                                              FC LRGNEFFCE
Sbjct: 70  SLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCE 116


>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus
           laevis GN=csnk2b PE=1 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|O76485|CSK2B_SPOFR Casein kinase II subunit beta OS=Spodoptera
           frugiperda PE=2 SV=1
          Length = 221

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus
           norvegicus GN=Csnk2b PE=2 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus
           cuniculus GN=CSNK2B PE=2 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa
           GN=CSNK2B PE=2 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus
           GN=Csnk2b PE=1 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapiens
           GN=CSNK2B PE=1 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|P08182|CSK2B_DROME Casein kinase II subunit beta OS=Drosophila
           melanogaster GN=CkIIbeta PE=1 SV=2
          Length = 235

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24


>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio
           GN=csnk2b PE=2 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 FCGLRGNEFFCE 690
           FCGLRGNEFFCE
Sbjct: 13  FCGLRGNEFFCE 24
tr_hit_id A9T768
Definition tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 100
Score (bit) 66.2
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A23, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|A9T5Q0|A9T5Q0_PHYPA Predicted protein OS=Physcomitrella paten...    50   2e-04
tr|B8LPQ3|B8LPQ3_PICSI Putative uncharacterized protein OS=Picea...    44   0.007
tr|A9FB10|A9FB10_SORC5 Putative uncharacterized protein OS=Soran...    39   0.24 
tr|A1YBS7|A1YBS7_SORCE Putative uncharacterized protein (Fragmen...    39   0.41 
tr|A7R7B2|A7R7B2_VITVI Chromosome undetermined scaffold_1657, wh...    36   2.7  
tr|A7PCI2|A7PCI2_VITVI Chromosome chr2 scaffold_11, whole genome...    36   2.7  
tr|B8MP81|B8MP81_9EURO Putative uncharacterized protein OS=Talar...    35   3.5  
tr|Q16KS7|Q16KS7_AEDAE Putative uncharacterized protein OS=Aedes...    34   7.6  
tr|B6PZG5|B6PZG5_BRAFL Putative uncharacterized protein OS=Branc...    34   10.0 

>tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_59578 PE=4 SV=1
          Length = 298

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +1

Query: 397 RESIDAKKRIEETLERTSPSTSKGN-AREKDRVSMVPAST-GRRLGSVDLRPTFDKTKYA 570
           R+  D KKR+E+ ++++SPSTS+G   REKDR++   A+T  RR    + RPT +K KY 
Sbjct: 26  RDVTDNKKRLEDGIDKSSPSTSRGGIGREKDRIAAPAATTQSRRNAGHETRPTMEKAKYP 85

Query: 571 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
                                       FC LRGNEFFCE
Sbjct: 86  EDAEDSESESEDSDVSASDGEDTSWISWFCSLRGNEFFCE 125


>tr|A9T5Q0|A9T5Q0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219176 PE=4 SV=1
          Length = 299

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = +1

Query: 397 RESIDAKKRIEETLERTSP-STSKGN-AREKDRVSMVPASTGR-RLGSVDLRPTFDKTKY 567
           R+  D KKR E  +    P STSKG   REKDR++   + T   R  +++ RPT +K KY
Sbjct: 24  RDVTDNKKRFEGGIPLLQPPSTSKGLIGREKDRIAAAASKTQTSRNAALEARPTLEKAKY 83

Query: 568 A--XXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
                                          FCGLRGNEFFCE
Sbjct: 84  PEDVAAEDSESESEDSDVSASDGEDTSWISWFCGLRGNEFFCE 126


>tr|B8LPQ3|B8LPQ3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 297

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
 Frame = +1

Query: 415 KKRIEETL------ERTSPSTSKGNAREKDRVSMVPASTGRRL-GSVDLRPTFDKTKYAX 573
           +KRI + L      E++ PSTSKG      R+S+   S GRR  G        DKT YA 
Sbjct: 29  RKRINDALDKHLHLEKSPPSTSKGL---NGRLSIPSTSAGRRAPGDSRNASALDKTNYAE 85

Query: 574 XXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
                                      FC LRGNEFFCE
Sbjct: 86  DVEDSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 124


>tr|A9FB10|A9FB10_SORC5 Putative uncharacterized protein
           OS=Sorangium cellulosum (strain So ce56) GN=sce7795 PE=4
           SV=1
          Length = 818

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 136 VSGNHPARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ-TLLEKE 300
           + G  P R +++LP    A+A L ATERR LL+     R  G K +AAQ  LLEK+
Sbjct: 741 LGGILPERFKDTLPVLRRAFAALGATERRYLLENVLAARKLGDKARAAQAVLLEKD 796


>tr|A1YBS7|A1YBS7_SORCE Putative uncharacterized protein (Fragment)
           OS=Sorangium cellulosum PE=4 SV=1
          Length = 301

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 151 PARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ-TLLEKE 300
           P R +++LP    A+A L ATERR LL+     R  G K +AAQ  LLEK+
Sbjct: 229 PERFKDTLPVLRRAFAGLGATERRYLLENVLAARKLGDKARAAQAVLLEKD 279


>tr|A7R7B2|A7R7B2_VITVI Chromosome undetermined scaffold_1657, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009906001 PE=4 SV=1
          Length = 147

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
 Frame = +1

Query: 403 SIDAKK---RIEETLERTSPSTSKG-NAREKDRVSMVPASTGR 519
           SID K+    +++ LER+SPSTSKG N ++KDRVS      G+
Sbjct: 71  SIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIGK 113


>tr|A7PCI2|A7PCI2_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015874001
           PE=4 SV=1
          Length = 94

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
 Frame = +1

Query: 403 SIDAKK---RIEETLERTSPSTSKG-NAREKDRVSMVPASTGR 519
           SID K+    +++ LER+SPSTSKG N ++KDRVS      G+
Sbjct: 18  SIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIGK 60


>tr|B8MP81|B8MP81_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_105320 PE=4
           SV=1
          Length = 275

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = +1

Query: 103 RSKIYRFPLERVSGNHPARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ 282
           R++  R  LERV  N   R+R+    R  A  + +AT+R  L + N  LRA  +KLQ  Q
Sbjct: 18  RAQFARPRLERVDNNPRTRLRDEATAREQA-TQQQATQRATLERENRTLRAQVRKLQHEQ 76

Query: 283 TLLEKEMLQ 309
             L +   Q
Sbjct: 77  AALREHAAQ 85


>tr|Q16KS7|Q16KS7_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL012890 PE=4 SV=1
          Length = 871

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
 Frame = -3

Query: 367 CTYHRSSLHRSEENTPTTESAASPSQGASELPEAF-----DR*P*EGNSA*AKPFVQLLE 203
           C   R+     +E     E AASP++   ++ E +        P + +++   P V ++E
Sbjct: 6   CVSSRTKSDDDDEEDEAAEIAASPARTMDKIEEEYRVESPPTIPEQPSTSRGLPSVSIIE 65

Query: 202 APPTQRSERGVSFEPWRDDSHSLSPKEN 119
            PP  R E    ++   D  HS SP  +
Sbjct: 66  VPPDYRGESSRVYDIALDKQHSPSPSSS 93


>tr|B6PZG5|B6PZG5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_112830 PE=4 SV=1
          Length = 842

 Score = 33.9 bits (76), Expect = 10.0
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -3

Query: 352 SSLHRSEENTPTTESAASPSQGASELPEAFDR*P----*EGNSA*AKPFVQLLEAPPTQR 185
           + LH +E +T +T  + + S   +E  E+F   P     EGN+A  K    L    P  R
Sbjct: 748 TGLHTTERSTTSTTGSTTKSDATTEKTESFTTIPTTEKSEGNTASTKTTDDL----PMAR 803

Query: 184 SERGVS---FEPWRDDSHSLSPKE 122
           S RGV       WRD+ H+ +  E
Sbjct: 804 SFRGVMKVVNRDWRDELHNQASDE 827