NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951315
Clone id TST38A01NGRL0011_B08
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_B08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AATTTTAGCCACAACAATGAAGGGACCAAGTTGGATCTGCTTATGACGCAGGATTCGAAT
TCCCCTCTCTGGGGAGAATGCCGAAGACGAAACGGAAGCATTTGGCTGCCTTGGATGCAG
AGAAGAGACCACGGCTTCCACCTCAAGACGGGCTCATGTGCTCTTTATCCTCTGGCAAGC
AGGAAAGTCCTTTGAATCCGGAACCACGGGCATTGCCTTCTCTGTCATCTGGGATACAAG
AGCTTCCCCCCGACCTTAGCGACCCGACAGCGGAGGCTTCTTCGTCTCTTCAAGAAGGAG
GTCATGACGCTGCAGCCAAGCACCAAGATGACGATGCTCATAGTGATTGTAATTCTTGGG
TTGAGGTCAGAAAACAGAGGGTAGTGATCATAATTCCACCTCTGCCAGAAACCAAATTTG
AATTTCTGAGCACCACGTTGGCTCGTGTGCGCAAGGATGAAGCTCACTGCACTTCAAGGA
AACCCAGTGCTGTGCTACCTCAAGACACAGGTCGTGCCAAAAGCTCCAGTGGTAAGGTGT
ATGGTAAGAAGGCATGGAATGCCTTGAAAACAGAGAGAGAAGGCATGCGGGAGACAACAA
GCAGGGATCCGCCACCTATATCAGGTATGGATATTTTACTTGCGTCAGCATTGGGCGCAG
ACCATACAGG
■■Homology search results ■■ -
sp_hit_id A1TMB0
Definition sp|A1TMB0|LGT_ACIAC Prolipoprotein diacylglyceryl transferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
Align length 32
Score (bit) 35.8
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951315|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B08, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1TMB0|LGT_ACIAC Prolipoprotein diacylglyceryl transferase OS...    36   0.21 
sp|P81408|COTE1_HUMAN Protein COTE1 OS=Homo sapiens GN=C1orf2 PE...    33   1.4  
sp|A1WMU7|LGT_VEREI Prolipoprotein diacylglyceryl transferase OS...    32   2.3  
sp|O15226|NKRF_HUMAN NF-kappa-B-repressing factor OS=Homo sapien...    32   2.3  
sp|Q5T1M5|FKB15_HUMAN FK506-binding protein 15 OS=Homo sapiens G...    32   2.3  
sp|A2SI25|HSCA_METPP Chaperone protein hscA homolog OS=Methylibi...    32   3.0  
sp|O97776|ANDR_EULFC Androgen receptor OS=Eulemur fulvus collari...    32   4.0  
sp|O35551|RABE1_MOUSE Rab GTPase-binding effector protein 1 OS=M...    31   5.2  
sp|A6QNT4|F120B_BOVIN Constitutive coactivator of peroxisome pro...    31   5.2  
sp|Q9TT90|ANDR_CANFA Androgen receptor OS=Canis familiaris GN=AR...    31   5.2  
sp|Q66K41|Z385C_HUMAN Zinc finger protein 385C OS=Homo sapiens G...    31   6.8  
sp|Q6X2U3|POLS_RUBVB Structural polyprotein OS=Rubella virus (st...    31   6.8  
sp|Q9P206|K1522_HUMAN Uncharacterized protein KIAA1522 OS=Homo s...    31   6.8  
sp|P44930|LGT_HAEIN Prolipoprotein diacylglyceryl transferase OS...    30   8.8  
sp|A5UDH1|LGT_HAEIE Prolipoprotein diacylglyceryl transferase OS...    30   8.8  
sp|Q4QM05|LGT_HAEI8 Prolipoprotein diacylglyceryl transferase OS...    30   8.8  

>sp|A1TMB0|LGT_ACIAC Prolipoprotein diacylglyceryl transferase
           OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
           GN=lgt PE=3 SV=1
          Length = 270

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 161 LFILWQAGKSFESGTTGIAFSVIWDTRASPRP 256
           +F +WQ G SF  G  G+  S++W  R+  RP
Sbjct: 95  IFYIWQGGMSFHGGLLGVIASMVWFARSRHRP 126


>sp|P81408|COTE1_HUMAN Protein COTE1 OS=Homo sapiens GN=C1orf2 PE=1
           SV=1
          Length = 669

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 153 LMCSLSSGKQESPL-NPEPRALPSLSSGIQELPPDLSDPTAEASSSLQEG 299
           L C L    +ESPL    PRA  S S    E PP L  PTA  S    EG
Sbjct: 379 LDCGLRGPFEESPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEG 428


>sp|A1WMU7|LGT_VEREI Prolipoprotein diacylglyceryl transferase
           OS=Verminephrobacter eiseniae (strain EF01-2) GN=lgt
           PE=3 SV=1
          Length = 277

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 161 LFILWQAGKSFESGTTGIAFSVIWDTRASPRP 256
           +F LWQ G +F  G  G+  +++W   +  RP
Sbjct: 95  VFALWQGGMAFHGGLLGVIVAMLWFAHSRQRP 126


>sp|O15226|NKRF_HUMAN NF-kappa-B-repressing factor OS=Homo sapiens
           GN=NKRF PE=1 SV=2
          Length = 690

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
 Frame = +3

Query: 27  QVGSAYDAGFEFPS----LGRMPKTKRKHLAALDAEK------------RPRLPPQDGLM 158
           Q+    D G E PS    L +  K +++HL+  D +             RPR  P   + 
Sbjct: 6   QMAEGIDIG-EMPSYDLVLSKPSKGQKRHLSTCDGQNPPKKQAGSKFHARPRFEPVHFVA 64

Query: 159 CSLSSGKQESPLNPEPRALPSLSSGIQELPPDLSDPTAEASSSLQEG 299
            S    +QE P  P+ + + +  +    +P D+     + S S+Q+G
Sbjct: 65  SSSKDERQEDPYGPQTKEV-NEQTHFASMPRDIYQDYTQDSFSIQDG 110


>sp|Q5T1M5|FKB15_HUMAN FK506-binding protein 15 OS=Homo sapiens
            GN=FKBP15 PE=1 SV=2
          Length = 1219

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
 Frame = +3

Query: 117  AEKRPRLPPQDGLMCSLSSGKQESPLN---PEPRALPSLSSGIQE---LPPDL------- 257
            AE+RPR P Q+    S SSG+ ++PLN   PE   +PS    ++E   LPP         
Sbjct: 948  AEERPRRPSQEQ-SASASSGQPQAPLNRERPESPMVPS-EQVVEEAVPLPPQALTTSQDG 1005

Query: 258  ----SDPTAEASSSLQEG 299
                 D  AEA S +++G
Sbjct: 1006 HRRKGDSEAEALSEIKDG 1023


>sp|A2SI25|HSCA_METPP Chaperone protein hscA homolog OS=Methylibium
           petroleiphilum (strain PM1) GN=hscA PE=3 SV=1
          Length = 618

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
 Frame = -1

Query: 274 SAVGSLRSGGSSCIPDDR------------EGNARGSGFKGLSCLPEDKEH 158
           S V ++RSG + C+PDD             EG  R  GF  L+   ED E+
Sbjct: 31  SLVAAVRSGVAECLPDDEGRVILPSAVRYLEGGRRAIGFDALAAQAEDPEN 81


>sp|O97776|ANDR_EULFC Androgen receptor OS=Eulemur fulvus collaris
           GN=AR PE=2 SV=1
          Length = 884

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = +3

Query: 108 ALDAEKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGIQELPPDLSDPTAEASSS 287
           ALD E++P    Q  L C   SG       PEP A  + S G+Q+ PP  SD    A  S
Sbjct: 88  ALDEEQQPS-QQQSALECHPESG-----CVPEPGAAAAASKGLQQQPPAPSDEDDSAVPS 141


>sp|O35551|RABE1_MOUSE Rab GTPase-binding effector protein 1 OS=Mus
           musculus GN=Rabep1 PE=1 SV=1
          Length = 862

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 90  KRKHLAALDAEKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGIQELPPDLSDPT 269
           KRK     D E+  ++P    ++C+L+  +  +PL+ E   L S    +  L  DL  P+
Sbjct: 331 KRKDNKKTDTEEEVKIP----VVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLMLPS 386

Query: 270 AEASS 284
            +  S
Sbjct: 387 GDPFS 391


>sp|A6QNT4|F120B_BOVIN Constitutive coactivator of peroxisome
           proliferator-activated receptor gamma OS=Bos taurus
           GN=FAM120B PE=2 SV=1
          Length = 700

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +3

Query: 66  SLGRMPKTKRKHLAALDAEKRPRLP----PQDGL---MCSLSSGKQESPLNPEPRA 212
           S+   P++K++    +D+E + +LP    P+  L   MC+ +  KQE P+N  P A
Sbjct: 330 SMSSDPESKQEFPVCMDSESKQKLPVGTDPEFNLEAPMCTNTEVKQEDPVNVGPEA 385


>sp|Q9TT90|ANDR_CANFA Androgen receptor OS=Canis familiaris GN=AR
           PE=2 SV=1
          Length = 907

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 108 ALDAEKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGIQE---LPPDLSDPTAEA 278
           ALD E++P          S S G  ES   PEP    +   G+Q+    PPD +D  A +
Sbjct: 94  ALDEEQQP------SQQRSASKGHPESACVPEPGVTSATGKGLQQQQPAPPDENDSAAPS 147

Query: 279 SSSL 290
           + SL
Sbjct: 148 TLSL 151
tr_hit_id Q14P96
Definition tr|Q14P96|Q14P96_SPICI Hypothetical transmembrane protein OS=Spiroplasma citri
Align length 76
Score (bit) 39.3
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951315|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B08, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q14P96|Q14P96_SPICI Hypothetical transmembrane protein OS=Spi...    39   0.22 
tr|B0WC91|B0WC91_CULQU Pleiotropic regulator 1 OS=Culex quinquef...    37   1.1  
tr|Q4RWM6|Q4RWM6_TETNG Chromosome 3 SCAF14987, whole genome shot...    36   1.9  
tr|A2FI35|A2FI35_TRIVA Putative uncharacterized protein OS=Trich...    36   1.9  
tr|A3WCI5|A3WCI5_9SPHN Carbamoyl-phosphate synthase small subuni...    36   2.5  
tr|B3PFZ8|B3PFZ8_CELJU Glycosyl transferase, putative, gt2C OS=C...    35   4.2  
tr|A7Q032|A7Q032_VITVI Chromosome chr8 scaffold_41, whole genome...    35   4.2  
tr|Q0B8G7|Q0B8G7_BURCM Drug resistance transporter, EmrB/QacA su...    34   7.3  
tr|Q4TBL4|Q4TBL4_TETNG Chromosome undetermined SCAF7118, whole g...    34   9.4  
tr|B3PP42|B3PP42_RHIE6 Probable metalloendopeptidase protein OS=...    34   9.4  
tr|A3PIJ9|A3PIJ9_RHOS1 Histone deacetylase superfamily OS=Rhodob...    34   9.4  
tr|B6KEL5|B6KEL5_TOXGO Putative uncharacterized protein OS=Toxop...    34   9.4  
tr|A7RI01|A7RI01_NEMVE Predicted protein OS=Nematostella vectens...    34   9.4  

>tr|Q14P96|Q14P96_SPICI Hypothetical transmembrane protein
           OS=Spiroplasma citri GN=SPICI03_218 PE=4 SV=1
          Length = 570

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = -3

Query: 458 ILAHTSQRGAQKFKFGFWQRWNYDHYPLFSDLNPRITITMSIVILVLGCSVMTSFLKRRR 279
           IL    Q   ++F+FGFW       + +  DL   ITIT+ I+IL LG  +    L ++R
Sbjct: 448 ILYGFQQHSGEEFRFGFWS------WGIVDDLTAAITITIIILILTLGVHIANIVLTKKR 501

Query: 278 SLRCRVAKVGGKLLYP 231
                +   G ++++P
Sbjct: 502 KANI-IGYYGYEIVHP 516


>tr|B0WC91|B0WC91_CULQU Pleiotropic regulator 1 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ004561 PE=4 SV=1
          Length = 456

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 90  KRKHLAALDAEK-RPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGIQ 239
           K KHLAAL  +  RP  P QD ++   + G+ +  +N +   LP+ S+G Q
Sbjct: 60  KAKHLAALRGDSGRPEHPVQDSVLAITAGGESDHAINTQTALLPTSSAGSQ 110


>tr|Q4RWM6|Q4RWM6_TETNG Chromosome 3 SCAF14987, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00027784001
           PE=4 SV=1
          Length = 1726

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 45  DAGFEFPSLGRMPKTKRKHLAALDAEKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSL 224
           D+G +  +   +P  KR   ++++A+  P      G  C     K  SP++P+P+ALP  
Sbjct: 749 DSGVQAHTQSNIPLKKRTFRSSVEADAEPGSTGASGQSCK-EDAKDRSPVDPQPQALPEA 807

Query: 225 S 227
           S
Sbjct: 808 S 808


>tr|A2FI35|A2FI35_TRIVA Putative uncharacterized protein
            OS=Trichomonas vaginalis G3 GN=TVAG_368230 PE=4 SV=1
          Length = 1307

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 75   RMPKTKRKHLAALDAEKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGI-QELPP 251
            + P+  +K  ++ D E+ P   P+     S SS   + P   +P+ +  LSS   +E+PP
Sbjct: 908  KKPEPAKKLSSSSDEEEIPPKKPEPAKKISSSSSSDDLPPPKKPQPVQKLSSSSDEEIPP 967

Query: 252  DLSDPTAEASSSLQE 296
               +P  + SSS  E
Sbjct: 968  KKPEPAKKISSSSSE 982


>tr|A3WCI5|A3WCI5_9SPHN Carbamoyl-phosphate synthase small subunit
           OS=Erythrobacter sp. NAP1 GN=NAP1_04915 PE=4 SV=1
          Length = 392

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 71  GENAED-ETEAFGCLGC--REETTASTSRRAHVLFILWQAGKSFESGTTGIAFSVIWDTR 241
           G N ED E+   G +GC  REE T  +S RA   F+ W AG   + G +G+      DTR
Sbjct: 75  GANEEDVESRGLGAVGCIVREEVTPHSSFRARDEFVQWMAGHG-KIGLSGV------DTR 127

Query: 242 ASPR 253
           A  R
Sbjct: 128 ALTR 131


>tr|B3PFZ8|B3PFZ8_CELJU Glycosyl transferase, putative, gt2C
           OS=Cellvibrio japonicus (strain Ueda107) GN=gt2C PE=4
           SV=1
          Length = 331

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 410 FWQRWNYDHYPLFSDLNPRITITMSIVILVLGCSVMTSFL 291
           F+  +N+ HY   S L P  T+ +S++ +VLG   M SFL
Sbjct: 274 FYGAFNWYHYASISSLTPTGTVMLSVLPIVLGVQFMLSFL 313


>tr|A7Q032|A7Q032_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027118001
           PE=4 SV=1
          Length = 265

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 351 NSWVEVRKQRVVIIIPPLPETK 416
           +SWV V+KQRV I++PPLP  K
Sbjct: 39  DSWVIVKKQRVTILVPPLPVAK 60


>tr|Q0B8G7|Q0B8G7_BURCM Drug resistance transporter, EmrB/QacA
           subfamily OS=Burkholderia ambifaria (strain ATCC BAA-244
           / AMMD) GN=Bamb_4002 PE=4 SV=1
          Length = 485

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = -1

Query: 613 GGSLLVVSRMPSLSVFKAFHAFLPYTLPLELLARPVS*GSTALGFLEVQ*ASSLRTRANV 434
           G  L +V+ +P   V+ A   + PY L   L  R +  G +A+G   +  A +   R N+
Sbjct: 343 GAMLALVATLPI--VYLALTGYDPYVLVPALFVRGM--GQSAIGIPSMSAAYASVERRNL 398

Query: 433 VLRNS--NLVSGRGGIMITTLCFLTSTQELQ 347
            +  +  N+V   GG   TTLC L  T  LQ
Sbjct: 399 PMATTSLNIVQRLGGPTFTTLCTLFLTWRLQ 429


>tr|Q4TBL4|Q4TBL4_TETNG Chromosome undetermined SCAF7118, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00003710001 PE=4 SV=1
          Length = 872

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
 Frame = +3

Query: 57  EFPSLGRMP---------KTKRKHLAALDAEKRPRL----PPQDGLMCSLSSGKQESPL- 194
           EFP L + P          T+ K  ++   E  P L     P     CS S+  + +PL 
Sbjct: 394 EFPRLSKAPMALALNSAYSTQAKKKSSFQEEDFPALVTKVQPLKPAACSRSAWSKNAPLN 453

Query: 195 NPEPRALPSLSSGIQELPPDLSDPTAEASSSLQEGG 302
           NP P+A PS S+     PP  SD  + +SS  ++GG
Sbjct: 454 NPSPQA-PSSSNA---APPFSSDRLSSSSSMKKKGG 485


>tr|B3PP42|B3PP42_RHIE6 Probable metalloendopeptidase protein
           OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0002374
           PE=4 SV=1
          Length = 411

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 120 EKRPRLPPQDGLMCSLSSGKQESPLNPEPRALPSLSSGIQELPPDLSDPTAEASSSLQ 293
           E++  L  + G + +L    + S L  +  ALP+LSS +Q   PD+ D  A  +  L+
Sbjct: 84  EQQMALTSRHGKLDNLLDRAESSGLTEKDGALPALSSPVQSFAPDIKDKRASLTGGLE 141