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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951316
Clone id TST38A01NGRL0011_B09
Library
Length 700
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_B09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGTTGCCGGCTG
CATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACGCAGCGGCAGCT
CCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCGCGTGAATCAGCACGGTGGGCTA
TTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTTCCTCCTCCT
CCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAGCTCGAAGTGCTTGC
CAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTCCCTACATCC
TCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTTCATGTCACT
GCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTTACGGACAGA
ACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAAGCGTACCTGCTGCT
GCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGGATAGGTTGAAGACT
GGCTATCTCAAATTCAAGGAAAACTACATAAAAAATCAAGCACTTGTGAAGTCGCTGGCA
GAAACTCAGACGCCTCCGTACATGATTATTGCCTGTGCTG
■■Homology search results ■■ -
sp_hit_id P17067
Definition sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum
Align length 39
Score (bit) 45.4
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951316|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B09, 5'
         (700 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa...    45   3e-04
sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2...    44   8e-04
sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=...    44   8e-04
sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P...    44   8e-04
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac...    43   0.002
sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=...    42   0.002
sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid...    42   0.004
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian...    41   0.005
sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti...    40   0.016
sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu...    36   0.18 
sp|P0ABE9|CYNT_ECOLI Carbonic anhydrase 1 OS=Escherichia coli (s...    31   7.4  
sp|P0ABF0|CYNT_ECO57 Carbonic anhydrase 1 OS=Escherichia coli O1...    31   7.4  

>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
 Frame = +1

Query: 586 DRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           +R+KTG+L FK E Y KN AL   LA+ Q+PP+M+ AC+
Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACS 160


>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2
           SV=1
          Length = 330

 Score = 43.9 bits (102), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M+ AC+
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACS 162


>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=2
          Length = 330

 Score = 43.9 bits (102), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M+ AC+
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACS 162


>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2
           SV=1
          Length = 330

 Score = 43.9 bits (102), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+K+G++KFK E ++ N AL   LA+ Q+P +M+ AC+
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACS 162


>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=2
          Length = 319

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 562 TEVETLPLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           T   + P+ R+K G++KFK E Y KN AL   L++ Q P +M+ AC+
Sbjct: 105 TPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACS 151


>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2
           SV=1
          Length = 329

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+K+G++KFK E ++ N  L   LA+ Q+P +M+ AC+
Sbjct: 121 PVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACS 161


>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic
           OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2
          Length = 347

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++ +K G++KFK E Y  N AL   LA+ Q+P YM+ AC+
Sbjct: 128 PVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACS 168


>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana
           GN=CA2 PE=1 SV=2
          Length = 259

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+K G++ FK E Y  N AL   LA+ Q+P YM+ AC+
Sbjct: 51  PVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACS 91


>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 321

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++ +K G++ FK E Y KN AL   L++ Q+P +M+ AC+
Sbjct: 113 PVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACS 153


>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum
           vulgare PE=2 SV=1
          Length = 324

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++RLKTG+ KFK E Y K     + L   Q P YM+ ACA
Sbjct: 127 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACA 166
tr_hit_id Q94CE4
Definition tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
Align length 40
Score (bit) 46.2
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951316|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B09, 5'
         (700 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    46   0.002
tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    46   0.002
tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    45   0.005
tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis P...    45   0.005
tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    44   0.010
tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    43   0.022
tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    43   0.022
tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum ...    43   0.022
tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra termina...    43   0.022
tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus GN...    42   0.038
tr|Q2Q063|Q2Q063_FLAPR Carbonic anhydrase OS=Flaveria pringlei P...    42   0.038
tr|Q2Q062|Q2Q062_FLALI Carbonic anhydrase OS=Flaveria linearis P...    42   0.038
tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa...    42   0.038
tr|A9PED7|A9PED7_POPTR Carbonic anhydrase OS=Populus trichocarpa...    42   0.038
tr|Q56X90|Q56X90_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    42   0.050
tr|Q8W183|Q8W183_TOBAC Carbonic anhydrase OS=Nicotiana tabacum P...    41   0.065
tr|Q41089|Q41089_9ROSI Carbonic anhydrase OS=Populus tremula x P...    41   0.065
tr|Q41088|Q41088_9ROSI Carbonic anhydrase OS=Populus tremula x P...    41   0.065
tr|Q3E9H5|Q3E9H5_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.065
tr|Q2V377|Q2V377_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.065
tr|Q2V376|Q2V376_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.065
tr|A9PJH1|A9PJH1_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    41   0.065
tr|A9PIY3|A9PIY3_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    41   0.065
tr|A8MQY4|A8MQY4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.065
tr|B4FWC5|B4FWC5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.11 
tr|B4FQ79|B4FQ79_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.11 
tr|B4FNM0|B4FNM0_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.11 
tr|B7FL34|B7FL34_MEDTR Putative uncharacterized protein OS=Medic...    40   0.14 
tr|O64452|O64452_NICPA Carbonic anhydrase OS=Nicotiana paniculat...    40   0.19 
tr|A7QNW6|A7QNW6_VITVI Chromosome chr1 scaffold_135, whole genom...    40   0.19 

>tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 280

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++R+KTG+ +FK E Y+KN  L   LA+TQTP +++ AC+
Sbjct: 71  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACS 110


>tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 258

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++R+KTG+ +FK E Y+KN  L   LA+TQTP +++ AC+
Sbjct: 49  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACS 88


>tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g23730 PE=2 SV=1
          Length = 258

 Score = 45.1 bits (105), Expect = 0.005
 Identities = 20/40 (50%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++R+K+G+L FK  NY KN  L  SLA++QTP +++ ACA
Sbjct: 49  VERIKSGFLHFKTNNYEKNPTLYNSLAKSQTPKFLVFACA 88


>tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=1
          Length = 258

 Score = 45.1 bits (105), Expect = 0.005
 Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+KTG+ KFK E Y+KN AL   L++ Q+P +M  AC+
Sbjct: 50  PVERIKTGFAKFKTEKYLKNPALYGELSKGQSPKFMAFACS 90


>tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00020732001 PE=3 SV=1
          Length = 324

 Score = 43.9 bits (102), Expect = 0.010
 Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+KTG++ FK E Y KN AL   LA+ Q+P +M+ AC+
Sbjct: 116 PVERMKTGFIYFKKEKYDKNPALHAELAKGQSPKFMVFACS 156


>tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypium
           hirsutum GN=CA1 PE=2 SV=1
          Length = 322

 Score = 42.7 bits (99), Expect = 0.022
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++RLK G++ FK E Y KN AL   LA+ Q+P YMI+AC+
Sbjct: 115 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACS 154


>tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypium
           hirsutum GN=CA2 PE=2 SV=1
          Length = 319

 Score = 42.7 bits (99), Expect = 0.022
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++RLK G++ FK E Y KN AL   LA+ Q+P YMI+AC+
Sbjct: 112 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACS 151


>tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum
           GN=CAH2 PE=3 SV=1
          Length = 326

 Score = 42.7 bits (99), Expect = 0.022
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           ++RLK G++ FK E Y KN AL   LA+ Q+P YMI+AC+
Sbjct: 119 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACS 158


>tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra terminalis
           PE=2 SV=1
          Length = 324

 Score = 42.7 bits (99), Expect = 0.022
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 PLDRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           P++R+KTG++ FK E Y  N AL   LA+ Q+P +M+ AC+
Sbjct: 116 PIERMKTGFIHFKKEKYETNPALFGELAKGQSPKFMVFACS 156


>tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus
           GN=CipCa1 PE=2 SV=2
          Length = 328

 Score = 42.0 bits (97), Expect = 0.038
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = +1

Query: 586 DRLKTGYLKFK-ENYIKNQALVKSLAETQTPPYMIIACA 699
           DR+K+G+L FK E Y KN AL   LA+ Q+P +M+ AC+
Sbjct: 122 DRIKSGFLYFKKEKYDKNPALYGELAKGQSPKFMVFACS 160