DK951318 [AcEST]

DK951318
Clone id	TST38A01NGRL0011_B11
Library	TST38
Length	570
Definition	Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_B11. 5' end sequence.
Accession	DK951318
Tissue type	prothallia
Developmental stage	gametophyte
Contig ID	-
Sequence	ATCAGGATAGGCTTCATTCTACTGCTATATTGTATCATGGTGACACTTATCCCCACTTTG TACCTTTATGGCATGATACCATTGATCAGCCTACCAGCCACCCATAGGAGTCGGTAGCAC TCCTATCAGTTTCTTTGTTTGTACCTTTATGGCATGATACCATTGATCAGCCTACCAGCC ACCCATAGGAGTCGGTAGCACTCCTATTAGTTTCTTTGTTTGTAGTTTTCTTTGTTTGTA CCCAGACTTGGTACTAGACTCATCATTGTAATCAGTTGGTCTCATAGGTCATTTTGGCCT TTTGTAGACGTTAATATATCATTTCATTTCATTTCTCTCTTTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATCTATCAATACAC ACACACCCACACACACCAGCACGCACGGATCAGGGCGCTCTCTCTAGACACCCTTTGCCA ATGCGTAAGTGCGTCACCTATCTCGAGAGCAGCGCATCCAGAGAGCGCCCACATATTGAC GGCCACCCCTGGCCATGGATCGCCTGCATC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P55354
Definition	sp\|P55354\|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234)
Align length	25
Score (bit)	32.0
E-value	2.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK951318\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_B11, 5' (570 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P55354\|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp... 32 2.2 sp\|O85713\|NOEL_RHIFR GDP-mannose 4,6-dehydratase OS=Rhizobium fr... 32 2.2 >sp\|P55354\|NOEL_RHISN GDP-mannose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=noeL PE=3 SV=1 Length = 351 Score = 32.0 bits (71), Expect = 2.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 541 RQYVGALWMRCSRDRRTYALAKGV 467 R+YV +WM C +DR Y LA GV Sbjct: 233 REYVRGMWMMCQQDRPGDYVLATGV 257 >sp\|O85713\|NOEL_RHIFR GDP-mannose 4,6-dehydratase OS=Rhizobium fredii GN=noeL PE=3 SV=1 Length = 351 Score = 32.0 bits (71), Expect = 2.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 541 RQYVGALWMRCSRDRRTYALAKGV 467 R+YV +WM C +DR Y LA GV Sbjct: 233 REYVRGMWMMCQQDRPGDYVLATGV 257
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B6HJ21
Definition	tr\|B6HJ21\|B6HJ21_PENCH Pc21g15060 protein OS=Penicillium chrysogenum Wisconsin 54-1255
Align length	58
Score (bit)	33.9
E-value	6.6
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK951318\|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_B11, 5' (570 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B6HJ21\|B6HJ21_PENCH Pc21g15060 protein OS=Penicillium chrysog... 34 6.6 >tr\|B6HJ21\|B6HJ21_PENCH Pc21g15060 protein OS=Penicillium chrysogenum Wisconsin 54-1255 GN=Pc21g15060 PE=4 SV=1 Length = 319 Score = 33.9 bits (76), Expect = 6.6 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +1 Query: 13 FILLLYCIMVTLIPTLYLYGMIPLISLPATHRSR*HSYQFLCLYLYGMIPLISLPATH 186 FIL LYCI + L+ +L+ + +I + LP H + QF + + + +TH Sbjct: 50 FILPLYCIFILLLSSLHQWSLIWIFLLPTYHYEQHPRLQFAVIQFLFAAATVHILSTH 107