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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951333
Clone id TST38A01NGRL0011_C03
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_C03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AGAGTGTCCGCAATAATCAATATGACTATCTCCGTACCCGCGTCCTCCGAAGTTGTCGCT
CCTAGCTGCGCCACCGCATAGAGCTTGTCAGATAACTTCTCTGGACTCTAGGCCACTACC
CTGTTCGCCCCCGACAGCCCCAACCCGCTAGACATCTCTTGTGGCCGCCGTGTGATCTCC
GTGCTTGTGTGGAACCCGTATGACAACAAGAACTTCCAGACTCTCTCCTACTTGCCGCCC
TTGTCAAGTGAACAGATTGCCAATCAAGTTGACTTCGTGGTCCGAAGAGGCTGGACCCCT
TGCTTTGAGTTCGACAAAATCAGGAGCGTGAACAGAGAGCACTTCCTCGGCTGCGGCTAC
CACCATTGGCGGTACTGGAGTGATGTGTAAGCTGCCCATGTTTGGCTGCCAAGATGCCGC
TGCTGTGCTGCGTGAAATTGCATAGTGCGCCAAGGAGTATCCCGAACCCTTCATCCCCGT
GCTGGGCTTTGACGCTAATACGCATGTGCAGGTCTCCGGCTTCCTTGTCCACAAACCCTC
TGTCTAAACTTTCTTAAAGCAAGCCAATTTATTTGGCATGAATGCCTGCTTCCCATTTCC
CACTGGCACCTAAAACGCTTGCTCTTATGAGCTTTTGTGTC
■■Homology search results ■■ -
sp_hit_id O64416
Definition sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea
Align length 73
Score (bit) 86.7
E-value 1.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951333|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C03, 5'
         (641 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...    87   1e-27
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...    85   2e-27
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    77   5e-27
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    75   1e-26
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    75   2e-26
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    76   8e-26
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...    73   3e-25
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...    80   3e-25
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    69   3e-25
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    68   4e-25
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    68   4e-25
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    68   4e-25
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    68   4e-25
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...    84   4e-25
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    74   5e-25
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...    79   5e-25
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    72   5e-25
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...    79   5e-25
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    73   7e-25
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    69   7e-25
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    77   7e-25
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...    80   7e-25
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...    72   9e-25
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...    79   9e-25
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    67   1e-24
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    67   1e-24
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...    81   3e-24
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...    71   3e-24
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    70   3e-24
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...    76   3e-24

>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score = 86.7 bits (213), Expect(2) = 1e-27
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = +1

Query: 163 GRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGWTPCFEFDKIRSVNREH 342
           G RV  + VW PY+N  F+TLSYLPPLS + +A Q+D+V++ GW PC EFD   +V RE 
Sbjct: 53  GSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREG 112

Query: 343 FLGCGYHHWRYWS 381
               GY+  RYW+
Sbjct: 113 STMPGYYDGRYWT 125



 Score = 57.8 bits (138), Expect(2) = 1e-27
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEP-FIPVLGFDANTHVQVSGFLVHKPSV 544
           M KLPMFGC D+A+VLREI  C K Y +  +I  LGFD    VQ + F+VH+P++
Sbjct: 126 MWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score = 84.7 bits (208), Expect(2) = 2e-27
 Identities = 42/89 (47%), Positives = 54/89 (60%)
 Frame = +1

Query: 115 TTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGW 294
           T  FA  S  P   S G RV  + VW P   K F+TLSYLPPL+ EQ+  +VD+++R GW
Sbjct: 38  TRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGW 94

Query: 295 TPCFEFDKIRSVNREHFLGCGYHHWRYWS 381
            PC EF K+  V RE+    GY+  RYW+
Sbjct: 95  IPCIEFCKVGFVYREYHNSPGYYDGRYWT 123



 Score = 58.9 bits (141), Expect(2) = 2e-27
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M KLPMFGC D++ VL+E+  C+K YP+ F  ++GFD    VQ   FL +KP
Sbjct: 124 MWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score = 76.6 bits (187), Expect(2) = 5e-27
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +1

Query: 157 SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGWTPCFEFDKIRSVNR 336
           S G RV  + VW P+ N  F+TLSYLP L+ EQ+  +V++++R  W PC EFD   S++R
Sbjct: 44  SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISR 103

Query: 337 EHFLGCGYHHWRYW 378
           ++    GY+  RYW
Sbjct: 104 KYNRSPGYYDGRYW 117



 Score = 65.5 bits (158), Expect(2) = 5e-27
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +2

Query: 380 VMCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           VM KLPMFGC +A+ V+ E+  CAK YP+ FI V+GFD    VQ   F+VHKP
Sbjct: 118 VMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 74.7 bits (182), Expect(2) = 1e-26
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDI----SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIAN 264
           F+GL +T  F     N  DI    S G RV  + VW   + K ++TLSYLPPL+++Q+A 
Sbjct: 27  FTGLKSTVGFPATKKND-DITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLAR 85

Query: 265 QVDFVVRRGWTPCFEFDKIRS-VNREHFLGCGYHHWRYWS 381
           QVD+++   W PC EF+     V REH    GY+  RYW+
Sbjct: 86  QVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWT 125



 Score = 65.9 bits (159), Expect(2) = 1e-26
 Identities = 29/53 (54%), Positives = 36/53 (67%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D A VL E+  C KEYP  FI ++GFD+N  VQ   F+ +KP+
Sbjct: 126 MWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score = 74.7 bits (182), Expect(2) = 2e-26
 Identities = 32/74 (43%), Positives = 47/74 (63%)
 Frame = +1

Query: 157 SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGWTPCFEFDKIRSVNR 336
           S G RV  + VW PY NK F+TLSYLP L+ EQ+  +V+++++  W PC EF++   + R
Sbjct: 60  SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKR 119

Query: 337 EHFLGCGYHHWRYW 378
            +    GY+  RYW
Sbjct: 120 VYGNSPGYYDGRYW 133



 Score = 65.5 bits (158), Expect(2) = 2e-26
 Identities = 31/53 (58%), Positives = 36/53 (67%)
 Frame = +2

Query: 380 VMCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           VM KLPMFGC +A+ VL E+  CAK YP  FI V+GFD    VQ   F+VHKP
Sbjct: 134 VMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 75.9 bits (185), Expect(2) = 8e-26
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDI----SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIAN 264
           F+ L +T+ F        DI    S G RV  + VW P   K F+TLSYLPPLSSEQ+A 
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 265 QVDFVVRRGWTPCFEFDKIRS-VNREHFLGCGYHHWRYWS 381
           +VD+++R+   PC EF+     V REH    GY+  RYW+
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWT 127



 Score = 62.0 bits (149), Expect(2) = 8e-26
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M KLPMFGC D++ VL+E+  C K YP  FI ++GFD    VQ+  F+ +KP
Sbjct: 128 MWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1
          Length = 181

 Score = 73.2 bits (178), Expect(2) = 3e-25
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDI----SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIAN 264
           F+GL ++  F        DI    S G RV  + VW P   K F+TLSYLP LS  ++A 
Sbjct: 24  FTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAK 83

Query: 265 QVDFVVRRGWTPCFEFDKIRS-VNREHFLGCGYHHWRYWS 381
           +VD+++R  W PC EF+     V REH    GY+  RYW+
Sbjct: 84  EVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWT 123



 Score = 62.8 bits (151), Expect(2) = 3e-25
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M KLP+FGC D+A VL+E+  C KEYP   I ++GFD N  VQ   F+ +KP
Sbjct: 124 MWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKP 175


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score = 80.1 bits (196), Expect(2) = 3e-25
 Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDI----SCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIAN 264
           F+GL ++  F        DI    S G RV  + VW P   K F+TLSYLPPL+ EQ+A 
Sbjct: 26  FTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAK 85

Query: 265 QVDFVVRRGWTPCFEFDKIRS-VNREHFLGCGYHHWRYWS 381
           +V++++R+GW PC EF+  +  V RE+    GY+  RYW+
Sbjct: 86  EVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWT 125



 Score = 55.8 bits (133), Expect(2) = 3e-25
 Identities = 24/52 (46%), Positives = 34/52 (65%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M +LP+FG  D++ VL+E+A C  EYP+ FI ++GFD    VQ   F+ H P
Sbjct: 126 MWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177


>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 68.6 bits (166), Expect(2) = 3e-25
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +1

Query: 178 SVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGWTPCFEF 312
           +++VW P++NK F+T SYLPPL+ +QI  QVD+++R  WTPC EF
Sbjct: 35  AMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEF 79



 Score = 67.4 bits (163), Expect(2) = 3e-25
 Identities = 30/52 (57%), Positives = 39/52 (75%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M KLPMFGC D + VL EI+ C K +P+ +I ++ FDAN  VQ+SGFLVH+P
Sbjct: 110 MWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
           PE=2 SV=1
          Length = 184

 Score = 68.2 bits (165), Expect(2) = 4e-25
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 8/75 (10%)
 Frame = +1

Query: 181 VLVWNPYDNKNFQTLSYLPPLSSEQIANQVDFVVRRGWTPCFEF---DKIRSVNREHFLG 351
           ++VW P++NK F+T SYLPPL+ EQI+ QVD+++   WTPC EF   D+  + N E+ + 
Sbjct: 45  MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGN-ENCIR 103

Query: 352 CG-----YHHWRYWS 381
            G     Y   RYW+
Sbjct: 104 MGPVASTYQDNRYWT 118



 Score = 67.4 bits (163), Expect(2) = 4e-25
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKP 538
           M KLPMFGC D + VL EI  C K +P+ +I ++ FDAN  VQ+SGFLVH+P
Sbjct: 119 MWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 170
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 103
Score (bit) 142.0
E-value 3.0e-50
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951333|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C03, 5'
         (641 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   142   3e-50
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    93   2e-30
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    91   2e-29
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    90   2e-29
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    90   3e-29
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    89   4e-29
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    86   4e-29
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    88   1e-28
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    84   2e-28
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    84   4e-28
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...    80   2e-27
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...    80   2e-27
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...    80   2e-27
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    82   2e-27
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...    82   2e-27
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    80   4e-27
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...    80   5e-27
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...    82   9e-27
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...    82   9e-27
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...    79   9e-27
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...    79   9e-27
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...    79   1e-26
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    78   1e-26
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...    92   1e-26
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...    77   3e-26
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...    76   7e-26
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...    76   7e-26
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...    76   7e-26
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...    76   7e-26
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...    79   7e-26

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  142 bits (358), Expect(2) = 3e-50
 Identities = 67/103 (65%), Positives = 80/103 (77%)
 Frame = +1

Query: 70  ATA*SLSDNFSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSS 249
           A A SLS +FSGL A TLFAP   NPL IS G R+ ++LVW PYDNK F+TLSYLPPL++
Sbjct: 17  AAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTN 76

Query: 250 EQIANQVDFVVRRGWTPCFEFDKIRSVNREHFLGCGYHHWRYW 378
           +QIA QV+++VR+GWTPC EFD I SV REHF G GY+  RYW
Sbjct: 77  DQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119



 Score = 80.9 bits (198), Expect(2) = 3e-50
 Identities = 39/54 (72%), Positives = 43/54 (79%)
 Frame = +2

Query: 380 VMCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           +M KLPMFGC D+ +VLREIA CAKEYP  FI VLGFDA   VQV+GFLV KPS
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score = 93.2 bits (230), Expect(2) = 2e-30
 Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL +TTLFA  +     +  G RV  + VWNP     F+T SYLPPL+ +QIA QVDF
Sbjct: 29  FSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDF 88

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLG---CGYHHWRYWS 381
           ++++   PC EFD + SV+R +F G    GY+  RYW+
Sbjct: 89  MIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWT 126



 Score = 63.9 bits (154), Expect(2) = 2e-30
 Identities = 29/53 (54%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D+A VLREI  C + +P  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 127 MWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 90.5 bits (223), Expect(2) = 2e-29
 Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL + TLF   S     +  G RV  + VWNP     F+T SYLPPLS +QIA QVD+
Sbjct: 34  FSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVDY 93

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLG---CGYHHWRYWS 381
           ++++   PC EFD + +V+R +F G    GY+  RYW+
Sbjct: 94  MIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWT 131



 Score = 63.5 bits (153), Expect(2) = 2e-29
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D++ VLREI  C   YP  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 132 MWKLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score = 90.1 bits (222), Expect(2) = 2e-29
 Identities = 45/98 (45%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL +TTL A  +     +  G RV  + VWNP     F+T SYLPPL+ +QIA QVDF
Sbjct: 29  FSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDF 88

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLG---CGYHHWRYWS 381
           ++++   PC EFD + SV+R +F G    GY+  RYW+
Sbjct: 89  MIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWT 126



 Score = 63.9 bits (154), Expect(2) = 2e-29
 Identities = 29/53 (54%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D+A VLREI  C + +P  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 127 MWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 89.7 bits (221), Expect(2) = 3e-29
 Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL + TLF+  +     +  G RV  + VWNP     F+T SYLPPL+ +QIA QVD+
Sbjct: 64  FSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDY 123

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGC---GYHHWRYWS 381
           ++++   PC EFD + SV+R +F G    GY+  RYW+
Sbjct: 124 MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWT 161



 Score = 63.5 bits (153), Expect(2) = 3e-29
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D++ VLREI  C  ++P  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 162 MWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 89.4 bits (220), Expect(2) = 4e-29
 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL + TLF+  +     +  G RV  + VWNP     F+T SYLPPL+ ++IA QVD+
Sbjct: 33  FSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQVDY 92

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGC---GYHHWRYWS 381
           ++++   PC EFD + SV+R +F G    GY+  RYW+
Sbjct: 93  MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWT 130



 Score = 63.2 bits (152), Expect(2) = 4e-29
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D++ VLREI  C  ++P  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 131 MWKLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score = 86.3 bits (212), Expect(2) = 4e-29
 Identities = 41/95 (43%), Positives = 57/95 (60%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL + TLF+  S     +  G RV  + VWNP     F+T SYLPPLS + IA QV++
Sbjct: 34  FSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEY 93

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGCGYHHWRYWS 381
           ++++   PC EFD  + V RE+    GY+  RYW+
Sbjct: 94  MIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWT 128



 Score = 66.2 bits (160), Expect(2) = 4e-29
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGCQD+A VLREI  C K +P  F+ VLGFD    VQ+ GFLV +P+
Sbjct: 129 MWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 87.8 bits (216), Expect(2) = 1e-28
 Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL   TLF+  +     +  G RV  + VWNP     F+T SYLPPL+ +QIA QVD+
Sbjct: 34  FSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDY 93

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGC---GYHHWRYWS 381
           ++++   PC EFD + SV+R +F G    GY+  RYW+
Sbjct: 94  MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWT 131



 Score = 63.5 bits (153), Expect(2) = 1e-28
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGC D++ VLREI  C  ++P  ++ VLGFD+   VQ+ GFLV +P+
Sbjct: 132 MWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score = 84.0 bits (206), Expect(2) = 2e-28
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL + T+F+  + N   +  G RV  + VWNP     F+T SYLPPLS + IA QV++
Sbjct: 34  FSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEY 93

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGCGYHHWRYWS 381
           ++++   PC EFD    V+R +    GY+  RYW+
Sbjct: 94  MIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWT 128



 Score = 66.2 bits (160), Expect(2) = 2e-28
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGCQD+A VLREI  C K +P  F+ VLGFD    VQ+ GFLV +P+
Sbjct: 129 MWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score = 84.0 bits (206), Expect(2) = 4e-28
 Identities = 40/95 (42%), Positives = 58/95 (61%)
 Frame = +1

Query: 97  FSGL*ATTLFAPDSPNPLDISCGRRVISVLVWNPYDNKNFQTLSYLPPLSSEQIANQVDF 276
           FSGL ++TLF+  + +   +  G RV  + VWNP     F+T SYLPPLS + IA QVD+
Sbjct: 34  FSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVDY 93

Query: 277 VVRRGWTPCFEFDKIRSVNREHFLGCGYHHWRYWS 381
           ++++   PC EFD    V+R +    GY+  RYW+
Sbjct: 94  MIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWT 128



 Score = 65.5 bits (158), Expect(2) = 4e-28
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +2

Query: 383 MCKLPMFGCQDAAAVLREIA*CAKEYPEPFIPVLGFDANTHVQVSGFLVHKPS 541
           M KLPMFGCQD A VLREI  C K +P  F+ VLGFD    VQ+ GFLV +P+
Sbjct: 129 MWKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181