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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951340
Clone id TST38A01NGRL0011_C10
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_C10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CGGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTGAAACAA
AATGTTCCAAAGACCTACCCCAAGATGATTCTCAAGGCTTGCTCCGATGGGGGATATCCA
TGGGGAAATGTTGCTTGCTCAGATATAGATGATATCTTACTTAGATCACCACACCTTCTT
CATATACAAACTTGCGGCGCACGTTTCCCGCATACAAAATCTCTTATCTACCTACTTGAT
TCTTCATACAATCCTCCATGAAAAAGGTGGGCAGTTCAACATGGCACAAACCATGGGAAA
TTTTAAATATGTACAGCAATCCCATGAAATGCCCTGCCAAATTTAGTACCCCCCGTAACA
AGCACCTTGGGCGCCCCCTATATGAAGCACCCATGTCCATTCAAAATAGCACAGCATCTA
AGTTCCCATCACTGCGCCGCATTGTACCTTGCTTTCTCTCTCGCCAATTCTCCCCCCACA
CTCTTGCCTCCGCCACAGCTCGCTCGCGGTCACTCAAACTCTTCAAGCTCTCCATCCCTT
GCTGAGGACTCCCCTTCTGCCCACTGAATTTGACCCAATCATCCATATCTTGTTTTTTGG
TAGAGTTGCTCTCCTGCTGCATTCCATGATCTGCAGCTGCATGCACTCCGTTCATTCGAA
TAGGCCCCC
■■Homology search results ■■ -
sp_hit_id Q9FE20
Definition sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana
Align length 49
Score (bit) 38.5
E-value 0.028
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951340|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C10, 5'
         (616 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1 OS=Ara...    39   0.028
sp|Q1MTM9|YFN1_SCHPO Uncharacterized transcriptional regulatory ...    35   0.24 
sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2...    32   3.4  
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helica...    30   9.8  

>sp|Q9FE20|PBS1_ARATH Serine/threonine-protein kinase PBS1
           OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
          Length = 456

 Score = 38.5 bits (88), Expect = 0.028
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 512 SGQKGSPQQGMESLKSLSDRERAVAEARVWGENWRE-RKQGTMRRSDGN 369
           S ++ SP++    L    +RERAVAEA++WGE+ RE R+Q     S+ N
Sbjct: 405 SEKEDSPRETARILNRDINRERAVAEAKMWGESLREKRRQSEQGTSESN 453


>sp|Q1MTM9|YFN1_SCHPO Uncharacterized transcriptional regulatory
           protein C1327.01c OS=Schizosaccharomyces pombe
           GN=SPAC1327.01c PE=1 SV=2
          Length = 977

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +1

Query: 193 IQSSMKKVGSSTWHKPWEILNMYSNPMKCPAKFSTPRNKHLGRPLYEAPMSIQN-STASK 369
           + S    V S+T + P + L++ SNP + PAKF + R   +    Y    +  N   A+ 
Sbjct: 271 LSSQPVSVPSNTINIPTDSLSIVSNPSQTPAKFDSNRISQVPNSDYSIYSNFNNFPIANH 330

Query: 370 FPSLRRIVPCFLSRQFSPHTLASATARSRS 459
            PS  +     L   FSP +L + T  S S
Sbjct: 331 APSFPQSSVKKLDSSFSPTSLPTFTTNSAS 360


>sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2
           SV=1
          Length = 928

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 162 VCGKRAPQVCI*RRCGDLSKISSIS--EQATFPHGYPPSEQ 46
           +C  R+       +CGD  KI+S S    A +PH YPPS++
Sbjct: 13  LCSLRSSWASRNDKCGDTIKITSPSYLTSAGYPHSYPPSQR 53


>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase
           PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1
          Length = 705

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 506 QKGSPQQGMESLKSL---SDRERAVAEARVWGENWRERKQGTMRRSD 375
           ++G P+ G E  + L    +R +  AE + +G++W E+K   M+  D
Sbjct: 201 RRGDPETGEERARKLLEQHERVKQAAERKNFGKHWSEKKLEDMKERD 247
tr_hit_id Q3E9E7
Definition tr|Q3E9E7|Q3E9E7_ARATH Uncharacterized protein At5g18610.1 (Protein kinase family protein) OS=Arabidopsis thaliana
Align length 73
Score (bit) 56.6
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951340|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C10, 5'
         (616 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3E9E7|Q3E9E7_ARATH Uncharacterized protein At5g18610.1 (Prot...    57   1e-06
tr|A0MFG6|A0MFG6_ARATH Putative uncharacterized protein (Fragmen...    57   1e-06
tr|A9STC4|A9STC4_PHYPA Predicted protein OS=Physcomitrella paten...    54   9e-06
tr|A9U3S7|A9U3S7_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   1e-04
tr|A9STB9|A9STB9_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|A9TSM1|A9TSM1_PHYPA Predicted protein OS=Physcomitrella paten...    47   7e-04
tr|A7QUT5|A7QUT5_VITVI Chromosome chr1 scaffold_180, whole genom...    47   7e-04
tr|B4FGQ4|B4FGQ4_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.002
tr|B6TEK0|B6TEK0_MAIZE Protein kinase APK1A OS=Zea mays PE=2 SV=1      46   0.002
tr|A7NW73|A7NW73_VITVI Chromosome chr5 scaffold_2, whole genome ...    45   0.003
tr|Q6K603|Q6K603_ORYSJ Os02g0513000 protein OS=Oryza sativa subs...    45   0.004
tr|Q5JMQ1|Q5JMQ1_ORYSJ cDNA clone:J033035N01, full insert sequen...    45   0.004
tr|B8A8U1|B8A8U1_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.004
tr|A3A1B2|A3A1B2_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.004
tr|A2X5B3|A2X5B3_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.004
tr|Q6I5Q6|Q6I5Q6_ORYSJ Putative serine/threonine protein kinase ...    44   0.006
tr|Q0DIQ0|Q0DIQ0_ORYSJ Os05g0372100 protein OS=Oryza sativa subs...    44   0.006
tr|B8AXG7|B8AXG7_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.006
tr|A3B3D1|A3B3D1_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.006
tr|Q7XVM0|Q7XVM0_ORYSJ OSJNBa0072K14.3 protein OS=Oryza sativa s...    44   0.010
tr|Q0JDM3|Q0JDM3_ORYSJ Os04g0393900 protein OS=Oryza sativa subs...    44   0.010
tr|Q01LB3|Q01LB3_ORYSA H0718E12.2 protein OS=Oryza sativa GN=H07...    44   0.010
tr|B8AT94|B8AT94_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.010
tr|B6SVK8|B6SVK8_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.010
tr|A3ATC4|A3ATC4_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.010
tr|Q2LA70|Q2LA70_WHEAT Putative uncharacterized protein STK OS=T...    41   0.063
tr|A7P9Z0|A7P9Z0_VITVI Chromosome chr14 scaffold_9, whole genome...    40   0.11 
tr|A5AMX6|A5AMX6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.11 
tr|B2BDW4|B2BDW4_ARALY AvrPphB susceptible 1 OS=Arabidopsis lyra...    39   0.31 
tr|B2BDM6|B2BDM6_ARATH AvrPphB susceptible 1 OS=Arabidopsis thal...    39   0.31 

>tr|Q3E9E7|Q3E9E7_ARATH Uncharacterized protein At5g18610.1 (Protein
           kinase family protein) OS=Arabidopsis thaliana
           GN=At5g18610 PE=1 SV=1
          Length = 513

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
 Frame = -3

Query: 593 VHAAADHGMQQESNSTKKQDMDDWVKFSGQKGSPQQGMESLKSLS-----DRERAVAEAR 429
           V+A ++ G +    S +K  + D      Q+GSP     S +        DRERAVAEA+
Sbjct: 430 VNAGSEGGSETGGGSGRKWGLSDLEGQESQRGSPASVGRSSRGTPRNRDLDRERAVAEAK 489

Query: 428 VWGENWRERKQGT 390
           VWGENWRERK+ T
Sbjct: 490 VWGENWRERKRAT 502


>tr|A0MFG6|A0MFG6_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 514

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
 Frame = -3

Query: 593 VHAAADHGMQQESNSTKKQDMDDWVKFSGQKGSPQQGMESLKSLS-----DRERAVAEAR 429
           V+A ++ G +    S +K  + D      Q+GSP     S +        DRERAVAEA+
Sbjct: 430 VNAGSEGGSETGGGSGRKWGLSDLEGQESQRGSPASVGRSSRGTPRNRDLDRERAVAEAK 489

Query: 428 VWGENWRERKQGT 390
           VWGENWRERK+ T
Sbjct: 490 VWGENWRERKRAT 502


>tr|A9STC4|A9STC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_135047 PE=4 SV=1
          Length = 441

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 8/58 (13%)
 Frame = -3

Query: 539 QDMDDWVKFSGQ-KGSP-------QQGMESLKSLSDRERAVAEARVWGENWRERKQGT 390
           +D ++W +  G  + SP       + G++      +RERAVAEARVWGENWRERK+GT
Sbjct: 383 RDSEEWERHEGGGRDSPGYAGRTGRDGLKPQAPTRERERAVAEARVWGENWRERKRGT 440


>tr|A9U3S7|A9U3S7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_155699 PE=4 SV=1
          Length = 374

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
 Frame = -3

Query: 551 STKKQDMDDWVKFS--GQKGSPQQ------------GMESLKSLSDRERAVAEARVWGEN 414
           S   Q +++W + S  G++ SP+             GM+      +RERAVAEARVWGEN
Sbjct: 306 SQGSQALEEWERRSSVGRRDSPKHHAAPAARTGRDGGMQPHAPTRERERAVAEARVWGEN 365

Query: 413 WRERKQG 393
           WR+R++G
Sbjct: 366 WRDRQRG 372


>tr|A9STB9|A9STB9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_135049 PE=4 SV=1
          Length = 393

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 24/37 (64%), Positives = 27/37 (72%)
 Frame = -3

Query: 503 KGSPQQGMESLKSLSDRERAVAEARVWGENWRERKQG 393
           KG P+    S     +RERAVAEARVWGENWRERK+G
Sbjct: 356 KGGPRSP-SSQAPTRERERAVAEARVWGENWRERKRG 391


>tr|A9TSM1|A9TSM1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171700 PE=4 SV=1
          Length = 456

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = -3

Query: 500 GSPQQGMESLKSLSDRERAVAEARVWGENWRERKQG 393
           G+ + G++      +RERAVAEARVWGENWRE+++G
Sbjct: 418 GTARDGVKPHIPTRERERAVAEARVWGENWREKQRG 453


>tr|A7QUT5|A7QUT5_VITVI Chromosome chr1 scaffold_180, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006972001
           PE=4 SV=1
          Length = 464

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = -3

Query: 512 SGQKGSPQQGMESLKSLSDRERAVAEARVWGENWRE-RKQGTMRRSDG 372
           S ++ SP++    L    DRERAVAEA++WGENWRE R+Q      DG
Sbjct: 414 SEREDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDG 461


>tr|B4FGQ4|B4FGQ4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 309

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -3

Query: 557 SNSTKKQDMDDWVKFSGQKGSPQQGMESLKSL--SDRERAVAEARVWGENWRERKQG 393
           S+S ++  +DD      Q GSP Q     ++   +DR+RAVAEAR WGEN RER  G
Sbjct: 244 SDSGRRSGLDDMDLTGSQVGSPAQTGRRREAPRGTDRQRAVAEARTWGENSRERTNG 300


>tr|B6TEK0|B6TEK0_MAIZE Protein kinase APK1A OS=Zea mays PE=2 SV=1
          Length = 518

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = -3

Query: 545 KKQDMDDWVKFSGQKGSPQQGMESLKSLSDRERAVAEARVWGENWRERKQGTMRRSDGNL 366
           K  D +  V  +   G  ++ +   K   DRER VAEA++WGENWR++++  +    G+L
Sbjct: 454 KDLDRERMVAEAKMWGDRERMVAEAKMWGDRERMVAEAKMWGENWRDKRRAEI--GQGSL 511

Query: 365 DAV 357
           D+V
Sbjct: 512 DSV 514


>tr|A7NW73|A7NW73_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019808001
           PE=4 SV=1
          Length = 448

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = -3

Query: 458 DRERAVAEARVWGENWRERKQGTM 387
           DRERAVAEA+VWGENWRE+K+  +
Sbjct: 416 DRERAVAEAKVWGENWREKKRANV 439