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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951347
Clone id TST38A01NGRL0011_C17
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_C17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AGGCGATCTTACTCCTTGGGTTTTTGAGGGCTGAAAGGCATCTGCAAGAGCCAGTGCGCG
GGCAGGCTGCATGGCTCTATTCCCTCATGCTGGTTGAAGGCATGCACACCTGCTGAATTG
ATCATGTTGTTTCTAGTTGCATGAGATTGCCAATGTTGAAGTAACCAGCACAGCAGAGTG
TCGAAAAAATGGACAGCCACATCGGATATATGGTGGAAAAATTACCTTGCAAATTTGAGA
AAAGCTTATGGTGTAAGTCAAGACAAGAATGTATATATAGATGTACATGTTGCTTCACTA
GACTCAAAGGTGCCTATGTAATTTATTGAGGCTTCTGTGGATTGTGAGCGAGTTGTATGA
TTTTTTTTTGACATGAGTGTCATTCAATCTTTACTTCAAAAAAAAAAAAAAAAAAAACCC
AA
■■Homology search results ■■ -
sp_hit_id O34213
Definition sp|O34213|GADH3_PECCY Gluconate 2-dehydrogenase subunit 3 OS=Pectobacterium cypripedii
Align length 34
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951347|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C17, 5'
         (397 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O34213|GADH3_PECCY Gluconate 2-dehydrogenase subunit 3 OS=Pec...    31   1.7  
sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis...    29   6.4  

>sp|O34213|GADH3_PECCY Gluconate 2-dehydrogenase subunit 3
           OS=Pectobacterium cypripedii PE=1 SV=1
          Length = 220

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 113 AGVHAFNQHEGIEPCSLPAHWLLQMPFSPQKPKE 12
           AGV  F   +   P +L ++W +Q PF+P  PKE
Sbjct: 88  AGVPEFIDRQMNTPYALGSNWYMQGPFNPDLPKE 121


>sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis
            elegans GN=tag-308 PE=2 SV=3
          Length = 7548

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 377  LMSKKNHTTRSQSTEASINYIGTFESSEA 291
            +M+  N TT SQST +S  +   FE SEA
Sbjct: 2391 VMASNNLTTSSQSTSSSFGFNNVFELSEA 2419
tr_hit_id B6NWF5
Definition tr|B6NWF5|B6NWF5_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 45
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951347|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_C17, 5'
         (397 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6NWF5|B6NWF5_BRAFL Putative uncharacterized protein OS=Branc...    39   0.13 
tr|B6NVG4|B6NVG4_BRAFL Putative uncharacterized protein OS=Branc...    39   0.13 
tr|B6NVG3|B6NVG3_BRAFL Putative uncharacterized protein OS=Branc...    38   0.29 
tr|B6NVG2|B6NVG2_BRAFL Putative uncharacterized protein (Fragmen...    37   0.37 
tr|B6NWF4|B6NWF4_BRAFL Putative uncharacterized protein (Fragmen...    35   1.4  
tr|B2ERB7|B2ERB7_9BACT Putative uncharacterized protein OS=bacte...    33   5.4  

>tr|B6NWF5|B6NWF5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99911 PE=4 SV=1
          Length = 553

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 192 DSHIGYMVEKLPCKFEKSLWCKSRQECIYRCTCCFTRLKGAYVIY 326
           D  + ++++K+ C  E   W  SRQ C   C+ CF  L G +V Y
Sbjct: 168 DCELSWLIDKMAC-LEGCKWTLSRQACCSSCSACFLVLSGTFVCY 211


>tr|B6NVG4|B6NVG4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99573 PE=4 SV=1
          Length = 614

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 192 DSHIGYMVEKLPCKFEKSLWCKSRQECIYRCTCCFTRLKGAYVIY 326
           D  + ++++K+ C  E   W  SRQ C   C+ CF  L G +V Y
Sbjct: 231 DCELSWLIDKMAC-LEGCKWTLSRQACCSSCSACFLVLSGTFVCY 274


>tr|B6NVG3|B6NVG3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99572 PE=4 SV=1
          Length = 880

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 192 DSHIGYMVEKLPCKFEKSLWCKSRQECIYRCTCCFTRLKGAYVIY 326
           D  + ++++K+ C  E   W  SRQ C   C  CF  L G +V Y
Sbjct: 700 DCELSWLIDKMAC-LEGCKWTLSRQACSSSCFACFLMLSGRFVCY 743


>tr|B6NVG2|B6NVG2_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99571 PE=4 SV=1
          Length = 591

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 192 DSHIGYMVEKLPCKFEKSLWCKSRQECIYRCTCCFTRLKGAYVIY 326
           D  + ++++K+ C  E   W  SRQ C   C+ CF  L G +V +
Sbjct: 216 DCELSWLIDKMAC-LEGCKWTLSRQACCSSCSACFLVLSGTFVCF 259


>tr|B6NWF4|B6NWF4_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99910 PE=4 SV=1
          Length = 381

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 192 DSHIGYMVEKLPCKFEKSLWCKSRQECIYRCTCCFTRLKGAYVIY 326
           D    ++++ + C  E   W  SRQ C   C  CF  L G +V Y
Sbjct: 215 DCEFSWLIDNMAC-LEGCKWTLSRQACCSSCFACFLMLSGRFVCY 258


>tr|B2ERB7|B2ERB7_9BACT Putative uncharacterized protein
           OS=bacterium Ellin514 GN=CflavDRAFT_4964 PE=4 SV=1
          Length = 420

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 182 DTLLCWLLQHWQSHATRNN--MINSAGVHAFNQHEGIEPCSLPA 57
           D ++ WLLQH  SH  R N  ++NS G H  N  E +E    PA
Sbjct: 76  DRIIPWLLQHL-SHVPRENITLLNSLGTHRPNTREELERLLTPA 118