DK951354 |
Clone id |
TST38A01NGRL0011_D01 |
Library |
TST38 |
Length |
645 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_D01. 5' end sequence. |
Accession |
DK951354 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
TGCAGTCTCTGTCATTGTTGGTCCAAAAGAAGGAGATACGCCTGAACGGCAGAAGTATTA TCAGGGTATCAAATTCTTTGCACCAGAGGTCAAAGGTGATTCTCCAGAAATGGTCGAGTT TCAAGGGATGCAAAATTTGCTTGAAGTTGTCAAAGAGTATCTTGGTTTACGAGATGGCAA GACTTTATACAGCATTTCTGCCAAGGGTCTGCCGACGGGCCCTGCATGGGGTGCTTTGGA TGATGTGGTGATGGGTGGTGTAAGTTCAAGTGGCCTTCAGATTGAATTGAAGGGTGGTGA AGATGGTGGGGCTGTTGGGGTTTTCAAAGGATTGGTATCAACTGATAACAATGGTGGCTT CGCAAGTATCCGAACAAAGAATTTCGAGTCACCAGAGAATCTGTCAGCCTATGAAGGTTT GGAATTGCGATTGAAAGGAGATGGGCACCGCTTCAAATTGATTGTGCGAACTTCAAGAGA CTGGGATGCCCTTGGCTATGCCATGAGTTTTGACACAATTAAGGATGAATGGCAATCAGT GCGGCTGCCTTTTGCTAAATTTATTCCCACATTCAGAGCTCGAATTGTTAGTAATGCAGA ACCTCTNACCACCTCANACATCTTGTCGTTACAGCTGATGTACAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LQI7 |
Definition |
sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana |
Align length |
157 |
Score (bit) |
69.7 |
E-value |
1.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951354|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_D01, 5' (645 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated... 70 1e-11 sp|O14297|YF1F_SCHPO Uncharacterized protein C9E9.15 OS=Schizosa... 61 6e-09 sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated... 44 6e-04 sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus c... 39 0.023 sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS... 36 0.20 sp|Q8R2H7|TRAK2_RAT Trafficking kinesin-binding protein 2 OS=Rat... 35 0.34 sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein ... 35 0.44 sp|Q8VD37|SGIP1_MOUSE SH3-containing GRB2-like protein 3-interac... 35 0.44 sp|O18733|MMP9_CANFA Matrix metalloproteinase-9 OS=Canis familia... 35 0.44 sp|Q99583|MNT_HUMAN Max-binding protein MNT OS=Homo sapiens GN=M... 34 0.58 sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein ... 34 0.74 sp|Q9H6K5|YS027_HUMAN Putative uncharacterized protein FLJ22184 ... 34 0.75 sp|Q5RDL3|SGIP1_PONAB SH3-containing GRB2-like protein 3-interac... 34 0.75 sp|Q0MQ82|CIA30_PONAB Complex I intermediate-associated protein ... 33 0.97 sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein ... 33 0.97 sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein ... 33 0.97 sp|O14686|MLL2_HUMAN Histone-lysine N-methyltransferase MLL2 OS=... 33 1.3 sp|Q67FY3|BCL9L_DANRE B-cell CLL/lymphoma 9-like protein OS=Dani... 33 1.3 sp|Q61FQ3|CIA30_CAEBR Probable complex I intermediate-associated... 33 1.7 sp|Q9UBK2|PRGC1_HUMAN Peroxisome proliferator-activated receptor... 33 1.7 sp|A4R8N4|PAN1_MAGGR Actin cytoskeleton-regulatory complex prote... 33 1.7 sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2 33 1.7 sp|Q18726|CIA30_CAEEL Probable complex I intermediate-associated... 32 2.2 sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransfera... 32 2.2 sp|P14240|L_LYCVA RNA-directed RNA polymerase OS=Lymphocytic cho... 32 2.8 sp|Q9AKP3|RICKA_RICMO Arp2/3 complex-activating protein rickA OS... 32 2.9 sp|Q9Z213|ALEX_RAT Protein ALEX OS=Rattus norvegicus GN=Gnas PE=... 32 2.9 sp|A5IJ92|TIG_THEP1 Trigger factor OS=Thermotoga petrophila (str... 32 3.7 sp|Q9WZF8|TIG_THEMA Trigger factor OS=Thermotoga maritima GN=tig... 32 3.7 sp|P43490|NAMPT_HUMAN Nicotinamide phosphoribosyltransferase OS=... 32 3.7
>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2 Length = 227
Score = 69.7 bits (169), Expect = 1e-11 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 20/157 (12%) Frame = +2
Query: 227 WGALDDVVMGGVSSSGLQIELKGGEDGGAVGVFKGLVSTD---------NNGGFASIRTK 379 W D GG+SS+ L+I KG + GVF G +S D + GF +R+K Sbjct: 46 WHLYSDSEYGGLSSASLEIPDKG-DGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSK 104
Query: 380 NFESPENLSAYEGLELRLKGDGHRFKLIVRTSR-----------DWDALGYAMSFDTIKD 526 F+ +L Y+ + LR++GDG + + T W A +A KD Sbjct: 105 KFDGFIDLDGYDAIALRIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAP-----KD 159
Query: 527 EWQSVRLPFAKFIPTFRARIVSNAEPLTTSXILSLQL 637 W + ++P A+++PT+R ++ + +L + L Sbjct: 160 SWYTAKIPLARYLPTWRGNVIDVEMEMNPGRVLGMSL 196
>sp|O14297|YF1F_SCHPO Uncharacterized protein C9E9.15 OS=Schizosaccharomyces pombe GN=SPAC9E9.15 PE=2 SV=2 Length = 219
Score = 60.8 bits (146), Expect = 6e-09 Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Frame = +2
Query: 233 ALDDVVMGGVSSSGLQIELKGGEDGGAVGVFKGLVSTDNNGG--FASIRTKNFESPENLS 406 A+DD V GG S S L E DG + F G + T GG F S T + NL Sbjct: 18 AVDDRVRGGSSISHLTEEKDS--DGKSRAKFWGTLDTKTLGGAGFCSQATNIKDRTWNLK 75
Query: 407 AYEGLELRL-KGDGHRFKLIVRTS-RDWD------ALGYAMSFDTI-KDEWQSVRLPFAK 559 ++G+EL + K D +++ I++ +DW+ +L Y F I E Q V +PF++ Sbjct: 76 EFKGIELDIAKSDSYKYTFIIKDCHQDWETSDEKSSLSYEYDFTPIYSKEDQVVSIPFSE 135
Query: 560 FIPTFRARIVSNAEPLTTSXILSLQLM 640 F PT+R R V A L S I +M Sbjct: 136 FKPTYRGRPVEGAPELDVSKITQFSIM 162
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1 Length = 296
Score = 44.3 bits (103), Expect = 6e-04 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 31/212 (14%) Frame = +2
Query: 44 ERQKYYQGIKFFAPEVKGDSPEMVEFQGMQNLLEVVKEY-------------LGLRDGKT 184 ER+K G K PE S + + G+++L E +K + L R G+T Sbjct: 33 EREKK-SGYKTKLPE---PSKKQMIMDGLRDLKEEMKLWRQEVKEQFESDPILVFRPGET 88
Query: 185 LYSISAKGLPTGPAWGALDDVVMG-GVSSSGLQIELKGGEDGGAVGVFKGLVSTDNNG-- 355 K W D G G S++ L++ G G+F G V++D+ Sbjct: 89 DVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGA------GLFHGQVNSDHTKDG 142
Query: 356 -----GFASIRTKNF------ESPENLSAYEGLELRLKGDGHRFKLIVRTSRD----WDA 490 G+A+IRTK E+ + + Y L ++++GDG + + + T W+ Sbjct: 143 IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLMWND 202
Query: 491 LGYAMSFDTIKDEWQSVRLPFAKFIPTFRARI 586 + + + + WQ ++PF+KF + + R+ Sbjct: 203 IYHYVLYTRGGPHWQIAKIPFSKFFLSSKGRV 234
>sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus cuniculus GN=MMP9 PE=2 SV=1 Length = 707
Score = 38.9 bits (89), Expect = 0.023 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = -1
Query: 336 TNPLKTPTAPPSS-PPFNSI*RPLELTPPITTSSKAPHAGPVGRPLAEMLYKVLPSRKPR 160 T P PTAPP++ P + + RP E P T+ + AP AGP G P A PS P Sbjct: 455 TTPEPQPTAPPTACPTWPATVRPSE--HPTTSPTGAPSAGPTGPPTAS------PSAAPT 506
Query: 159 YSLTTSSKFC 130 SL + C Sbjct: 507 ASLDPAEDVC 516
>sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS=Azotobacter vinelandii GN=algE7 PE=1 SV=1 Length = 856
Score = 35.8 bits (81), Expect = 0.20 Identities = 30/99 (30%), Positives = 43/99 (43%) Frame = +2
Query: 230 GALDDVVMGGVSSSGLQIELKGGEDGGAVGVFKGLVSTDNNGGFASIRTKNFESPENLSA 409 GA DD++ GG+ +L GGE S N+G S +F+ E+ Sbjct: 575 GAGDDILNGGLGRD----QLSGGEGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRID 630
Query: 410 YEGLELRLKGDGHRFKLIVRTSRDWDALGYAMSFDTIKD 526 GL GDGH L++ TS + + Y +FDT D Sbjct: 631 LSGLGFSGLGDGHNGTLLLWTSSETNRT-YLKNFDTDAD 668
>sp|Q8R2H7|TRAK2_RAT Trafficking kinesin-binding protein 2 OS=Rattus norvegicus GN=Trak2 PE=1 SV=2 Length = 913
Score = 35.0 bits (79), Expect = 0.34 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -1
Query: 354 PLLSVDTNPLKTPTAPPSSPPFNSI*RPLELTPPITTSSKAPHAGPVGRPLAEMLYKVLP 175 PLL + L TP+ PP+SP + P+ P + S + P L EM Y + P Sbjct: 761 PLLQLRPKALATPSTPPNSPSQSPCSSPVPFEPRVHVSENFLASRPAETFLQEM-YGLRP 819
Query: 174 SRKP 163 SR P Sbjct: 820 SRAP 823
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1 Length = 327
Score = 34.7 bits (78), Expect = 0.44 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 17/152 (11%) Frame = +2
Query: 227 WGALDDVVMGGVSSSGLQIELKGGEDGGAVGVFKGLVST------DNNGGFASIRTK--- 379 W D +GG S ++ LK G++ + ++ L S G+ +++++ Sbjct: 136 WTVTSDKTIGGRS----EVFLKMGKNNQSALLYGTLSSEAPQDGESTRSGYCAMKSRIPR 191
Query: 380 -NFESPENL--SAYEGLELRLKGDGHRFKLIVRTSRDW-----DALGYAMSFDTIKDEWQ 535 FE + S + L LR++GDG + + ++ D+ Y M F WQ Sbjct: 192 GAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFM-FTRGGPYWQ 250
Query: 536 SVRLPFAKFIPTFRARIVSNAEPLTTSXILSL 631 V++PF+KF + R RI L I S+ Sbjct: 251 EVKIPFSKFFFSNRGRIRDVQHELPLDKISSI 282
>sp|Q8VD37|SGIP1_MOUSE SH3-containing GRB2-like protein 3-interacting protein 1 OS=Mus musculus GN=Sgip1 PE=1 SV=1 Length = 806
Score = 34.7 bits (78), Expect = 0.44 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Frame = -1
Query: 354 PLLSVDTNPLKTPTAPPSSPPF-------NSI*RPLELTPPITTSSKAPHAGPVGRPLAE 196 PL+ T P P PPS P + RP +PPI +SS P A PLA Sbjct: 448 PLVPCSTTPPPPPPRPPSRPKLPPGKPGVGDVSRP--FSPPIHSSSPPPIA-----PLAR 500
Query: 195 MLYKVLPSRKPRYSLTTSSKFCIP*NSTISGESPLTSGAKNLIP 64 S S + S P + G SPLT GA++ +P Sbjct: 501 -----AESTSSISSTNSLSAATTPTVGSSRGPSPLTMGAQDTLP 539
>sp|O18733|MMP9_CANFA Matrix metalloproteinase-9 OS=Canis familiaris GN=MMP9 PE=2 SV=2 Length = 704
Score = 34.7 bits (78), Expect = 0.44 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = -1
Query: 318 PTAPPSSPPFNSI*RPLELTPPITTSSKAPHAGPVGRPLA 199 PTAPP++PP PP T S+ P AGP G P A Sbjct: 454 PTAPPTAPP-----TVCATGPPTTRPSERPTAGPTGPPAA 488
>sp|Q99583|MNT_HUMAN Max-binding protein MNT OS=Homo sapiens GN=MNT PE=1 SV=1 Length = 582
Score = 34.3 bits (77), Expect = 0.58 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Frame = -1
Query: 354 PLLSVDTNPLKTPTAPPSSPPFNSI*RPLELTP-PITTSSKAPHAGPVGRPLAEMLYKVL 178 P + PL P PP+ PP + PL + P P+ T+S P P P A + Sbjct: 58 PRMEAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLA 117
Query: 177 PSRKPRY----SLTTSSKFCIP*NSTISGESPLTSGAKNLIP 64 P R+P L+ +P + +PL +K IP Sbjct: 118 P-RQPALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIP 158
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQ01 |
Definition |
tr|B8LQ01|B8LQ01_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
214 |
Score (bit) |
306.0 |
E-value |
7.0e-82 |
Report |
|