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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951358
Clone id TST38A01NGRL0011_D06
Library
Length 666
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_D06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CACACACACGCACGCTCCTAAAGTCGGTGTTTTGATTGGTAAAGCAGAAAATGCCTTCTG
CGCCATGCTTGGACGGTGCCATCGTTCTAGGCATATGGCAGAGCGGGGGCAAAGCAAGCT
CTCGGTCCAGGATCCCCAACCTCTTGCAGGAACGTTTGAATGGCTCACCTGAACAGGTTT
CTGCTCTGTTGAAACGGTCTAAGAAAGCCATTAAAGGTTTCTCTCTTGGCAGTTACCAGA
GTCTATGTGGAGCTAAATGGTTCTGTTCCGAGGCTCAGGAGGCCGAGTTTGAGACCTGGC
AGCTTACAAACCTCTCCCAGGATCCTCAAACAGCTGATGCACATATGGGCGCATTTTCTG
ATCGCCATATTGAAGCTACACATGCCGATCCTTCAAGAGGCTTGCACATGCCTGTTCATC
AGTTTGAAGAACGGAAATGTGGTGAAGGTGGCTCGATGAGCTCAGTTGTGGCCCCTAGCC
ATGCTGGTCATGTACATGCAGAGCACAAAGTAGATCATGTCTTTGCTGTATGGAAGGATC
CTTCACCAGGATTGCAAGGAGCATGTGCAGGTATTGAGAAACCTTTTGAGCCTCCCTACA
ATCCTGATGATCATGTAATGCATCAAAATCACAATGCCGGTATGAGTCAGTCTTACTCTA
GTCGTG
■■Homology search results ■■ -
sp_hit_id Q05AL2
Definition sp|Q05AL2|PPM1H_DANRE Protein phosphatase 1H OS=Danio rerio
Align length 76
Score (bit) 35.4
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951358|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_D06, 5'
         (666 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05AL2|PPM1H_DANRE Protein phosphatase 1H OS=Danio rerio GN=p...    35   0.27 
sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila me...    33   1.8  
sp|Q6N021|TET2_HUMAN Protein TET2 OS=Homo sapiens GN=TET2 PE=1 SV=2    32   2.3  
sp|Q12DU4|UREE_POLSJ Urease accessory protein ureE OS=Polaromona...    31   6.7  
sp|Q7RTU9|STRC_HUMAN Stereocilin OS=Homo sapiens GN=STRC PE=2 SV=1     31   6.7  
sp|A6NGW2|STRCL_HUMAN Putative stereocilin-like protein OS=Homo ...    31   6.7  

>sp|Q05AL2|PPM1H_DANRE Protein phosphatase 1H OS=Danio rerio
           GN=ppm1h PE=2 SV=1
          Length = 516

 Score = 35.4 bits (80), Expect = 0.27
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 441 GEGGSMSSVVAPSHAGHVHAEHKVDHVFAVWKDPSPGLQ-GACAGIEKPFEPPYNPDDHV 617
           G GGS ++V A     H+H E ++  V  + +D  PGLQ   C G E P     NP  H 
Sbjct: 145 GHGGSGAAVFAAKFL-HLHIEEQLQEVLEILQD--PGLQPPTCLGEESP-----NPQLHA 196

Query: 618 MHQNHNAGMSQSYSSR 665
                  G+S++ S R
Sbjct: 197 SASGSQRGLSRAASLR 212


>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila
           melanogaster GN=prd PE=1 SV=1
          Length = 613

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 24/63 (38%), Positives = 25/63 (39%)
 Frame = +3

Query: 471 APSHAGHVHAEHKVDHVFAVWKDPSPGLQGACAGIEKPFEPPYNPDDHVMHQNHNAGMSQ 650
           A SH GH HA H   H       P P   GA      P  PP +   H M QN NA    
Sbjct: 546 AHSHHGHPHAPHPHAH-------PHPQYAGA-----HPHYPPPSSSAHFMPQNFNAAAFP 593

Query: 651 SYS 659
           S S
Sbjct: 594 SPS 596


>sp|Q6N021|TET2_HUMAN Protein TET2 OS=Homo sapiens GN=TET2 PE=1 SV=2
          Length = 2002

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = +3

Query: 237 QSLCGAKWFCSEAQEAEFETWQLTNLSQDPQTADAHMGAFSDRHI-------EATHADPS 395
           QSLCG ++   +  +++ E      L Q      +    FS+ H+       +A    PS
Sbjct: 674 QSLCGTRFHFQQRADSQTEKLMSPVLKQQLNQQASETEPFSNSHLLQHKPHKQAAQTQPS 733

Query: 396 RGLHMPVHQFEERK 437
           +  H+P +Q +++K
Sbjct: 734 QSSHLPQNQQQQQK 747


>sp|Q12DU4|UREE_POLSJ Urease accessory protein ureE OS=Polaromonas
           sp. (strain JS666 / ATCC BAA-500) GN=ureE PE=3 SV=1
          Length = 220

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 369 IEATH--ADPSRGLHMPVHQFEERKCGEGGSMSSVVAPSHA-GHVHAEHK 509
           IE  H  AD  R +H+ VH+ EE    EGG+ S   A  H  GH H  H+
Sbjct: 118 IEPDHVLADMLRAMHLIVHEVEEAFEPEGGAYS---AGGHGHGHDHGSHE 164


>sp|Q7RTU9|STRC_HUMAN Stereocilin OS=Homo sapiens GN=STRC PE=2 SV=1
          Length = 1775

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
 Frame = +3

Query: 228 GSYQSLCGAKWFCSEAQEAEFETWQLTNLSQDPQTADAHMGAFSDRHIEATHADPSRGLH 407
           G    +  A W  S     E   WQ   +   P     +      R           GL 
Sbjct: 165 GPSDCVLAADWLPSLLLLLEGTRWQAL-VQVQPSVDPTNATGLDGREAAPHFLQGLLGLL 223

Query: 408 MPVHQFEERKCGEGGSMSSVVAPSHA----GHVHAEHKV-DHVFAVWKDPSPGLQGACAG 572
            P  +   ++   GG + +V AP +A    G +   H + D VF++   P P   G C G
Sbjct: 224 TPTGELGSKEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSILGQPEPDTNGQCQG 283


>sp|A6NGW2|STRCL_HUMAN Putative stereocilin-like protein OS=Homo
           sapiens GN=STRCP PE=5 SV=1
          Length = 1772

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
 Frame = +3

Query: 228 GSYQSLCGAKWFCSEAQEAEFETWQLTNLSQDPQTADAHMGAFSDRHIEATHADPSRGLH 407
           G    +  A W  S     E   WQ   +   P     +      R           GL 
Sbjct: 165 GPSDCVLAADWLPSLLLLLEGTRWQAL-VQVQPSVDPTNATGLDGREAAPHFLQGLLGLL 223

Query: 408 MPVHQFEERKCGEGGSMSSVVAPSHA----GHVHAEHKV-DHVFAVWKDPSPGLQGACAG 572
            P  +   ++   GG + +V AP +A    G +   H + D VF++   P P   G C G
Sbjct: 224 TPTGELGSKEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSILGQPEPDTNGQCQG 283
tr_hit_id A9USK2
Definition tr|A9USK2|A9USK2_MONBE Predicted protein OS=Monosiga brevicollis
Align length 114
Score (bit) 36.2
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951358|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_D06, 5'
         (666 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9USK2|A9USK2_MONBE Predicted protein OS=Monosiga brevicollis...    36   1.9  
tr|B4JDD4|B4JDD4_DROGR GH11165 OS=Drosophila grimshawi GN=GH1116...    36   2.5  
tr|Q7S9R0|Q7S9R0_NEUCR Putative uncharacterized protein OS=Neuro...    35   3.2  
tr|Q0UGS5|Q0UGS5_PHANO Putative uncharacterized protein OS=Phaeo...    35   4.2  

>tr|A9USK2|A9USK2_MONBE Predicted protein OS=Monosiga brevicollis
           GN=5820 PE=4 SV=1
          Length = 177

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
 Frame = +3

Query: 231 SYQSLCGAKWFCSEAQEAEFETW--QLTNLSQDP--------QTADAHMGAFSDRHIEAT 380
           SY+SL         +Q+A   T+  +L  +SQD         +T     G F     EA 
Sbjct: 10  SYRSL-------PRSQQARVSTFIRKLRRISQDAIVTNDRLVKTIAIQSGLFDPAEAEAQ 62

Query: 381 HADPSRGLHMPVHQFEERKCGEGGSMSSVVAPSHAGHVHAEHKVDHVFAVWKDP 542
            A P++ L   V   +     EGG+ S+     H+GH    H  DH   V  DP
Sbjct: 63  VATPAQALREAVVSQQRASSNEGGAPSTQQL-EHSGHSSGHHSHDHSAGVQIDP 115


>tr|B4JDD4|B4JDD4_DROGR GH11165 OS=Drosophila grimshawi GN=GH11165
           PE=4 SV=1
          Length = 738

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = +3

Query: 105 GGKASSRSRIPNLLQERLNGS-PEQVSALLKRSKKAIKGFS-LGSYQSLCGAKWFCSEAQ 278
           G KAS+R    +L  E LN S  +QV    +++++ +K    L    +L  ++    + Q
Sbjct: 222 GTKASTRVADSDLPAEYLNSSLSQQVQTPARKTEQELKEEEELQLALALSQSEAELKKPQ 281

Query: 279 EAEFETWQLTNLSQDPQTADAHMGAFSDRHIEATHADPSRGLHMPVHQFEERKCGEGGSM 458
                ++++   S  P+ A   M A   +  +    +P    ++    +E+RK  E  SM
Sbjct: 282 PQSLASYRMQQRSPSPEAAQPQMPAQQLQQQQQEETNPELAKYLNRVYWEQRKISESSSM 341

Query: 459 SSVVAPS 479
           +S  APS
Sbjct: 342 ASPSAPS 348


>tr|Q7S9R0|Q7S9R0_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU06605 PE=4 SV=1
          Length = 1158

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 31/116 (26%), Positives = 51/116 (43%)
 Frame = +3

Query: 84  VLGIWQSGGKASSRSRIPNLLQERLNGSPEQVSALLKRSKKAIKGFSLGSYQSLCGAKWF 263
           VL +W+ G + ++ + +  L+Q RL+    + S  L       K   L   Q+       
Sbjct: 136 VLSVWRLGNRKNTATTLDILVQVRLSELFIKGSTFLYTETGIPKVAFLYRNQA------- 188

Query: 264 CSEAQEAEFETWQLTNLSQDPQTADAHMGAFSDRHIEATHADPSRGLHMPVHQFEE 431
              + E +  T++LT  S D  T  +      DR I+A   DP  G+ +PV + EE
Sbjct: 189 --NSNETKLATYRLT--SDDRHTEISKFDPTRDREIDADVEDPGAGILIPVKKVEE 240


>tr|Q0UGS5|Q0UGS5_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_09039 PE=4 SV=2
          Length = 610

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 429 ERKCGEGG--SMSSVVAPSHAGHVHAEHKVDHVFAVWKDPSP 548
           +++ G GG  ++ SV +PS A H+H     DHV   W D SP
Sbjct: 103 QQRGGGGGRSALPSVSSPSTAQHMHRHASTDHVMQGWMDQSP 144