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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951373
Clone id TST38A01NGRL0011_D21
Library
Length 692
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_D21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCATCTTAAGATTCTCGTCATTGTAAAGAAGTCTCTGCATTTCTCTGGTGCCGAAAGGG
TCTGCATCTCACGGCACCGCTCCTTTGCAAAAGCAATTTCTGTGGGTTGCCAGTGCTCTT
TGGCTACCCGGGATTGAGCTTTCCAGCCTGCAGATATCAAGGTAACATCGAAAATAAATT
CTGGCTCTTTGAGAGATCTTTCAAGACACTACAGAGGGCAAAGCTTCTGGAAACCCAGTG
TTAGTATAGGGTTTGGGCAGGTTTTGATGCGAGTTCTGCATCGTCTGGTTTACCCCTCGA
GGAAGGCAAAGATCTTCAAGACTGGTGTGTCGTTGAATCCGCTGCGAGAAAGAAGGGCTG
TGGAAGCCCCTTCTCTTTGAGAGGGTGCTTCTCTGATGAAATTTCTGTGTTGAAATCTTC
TTCGGAAGGTTTACATTGCACGCACTTTTCTGGCCGGGTGTAAGATAATAATCAAGCAAT
GGTTGTGGATTGCCGGGGCCTTATTGAGTTTTGCAGAGCATTTGAGCAGTATAGGAGCAT
GACAAACTCCTTGGCAGTCACGGATGGAGCTAAACAGAGCATCAATAACTCCCTTCATTC
CAGATCTACTGCTAAGAGGCAACTGAATGGTGCTGTCCCACACGTAACATCTTCTTCTTC
AGCCTCACCCCCTTTCTGTGAAAAATCATCTG
■■Homology search results ■■ -
sp_hit_id Q54Z20
Definition sp|Q54Z20|CUPJ_DICDI Putative calcium up-regulated protein J OS=Dictyostelium discoideum
Align length 118
Score (bit) 35.0
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951373|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_D21, 5'
         (692 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54Z20|CUPJ_DICDI Putative calcium up-regulated protein J OS=...    35   0.38 
sp|Q8BYW9|AER61_MOUSE Uncharacterized glycosyltransferase AER61 ...    32   3.2  
sp|Q7VAV8|SURE_PROMA 5'-nucleotidase surE OS=Prochlorococcus mar...    32   4.2  
sp|O60131|YH7H_SCHPO Uncharacterized transcriptional regulatory ...    31   5.5  
sp|Q14258|TRI25_HUMAN Tripartite motif-containing protein 25 OS=...    31   7.2  

>sp|Q54Z20|CUPJ_DICDI Putative calcium up-regulated protein J
           OS=Dictyostelium discoideum GN=cupJ PE=3 SV=1
          Length = 655

 Score = 35.0 bits (79), Expect = 0.38
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
 Frame = +2

Query: 308 KDLQDWCVVESAARKKGCGSPFSLRGCFSDEISVLKSSSE----GLHCTHFSGRV*DNNQ 475
           KDL  WC ++S A  KG   PF         +SVL SS+E    G  C  F   + D  Q
Sbjct: 31  KDLPSWCFIKSRAMLKGDNKPF--------VVSVLNSSTETPSKGWKCVLFQTNINDKGQ 82

Query: 476 A-MVVDCRGLIEFCRAFEQYRSMTNSLAVTDGAKQSINNSLHS---RSTAKRQLNGAV 637
              +VD   L +   +F       N+    +G    IN+ + S   R T K   NG +
Sbjct: 83  LWQLVDGHLLSQLYGSFVLDIDSDNN----NGTDLIINSQIPSNNERQTWKLGSNGEI 136


>sp|Q8BYW9|AER61_MOUSE Uncharacterized glycosyltransferase AER61
           OS=Mus musculus GN=Aer61 PE=2 SV=1
          Length = 527

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -2

Query: 235 GFQKLCPL*CLERSLKEPEFIFD---VTLISAGWKAQSRVAKE-HWQPTEIAFAKERCRE 68
           G++K C           PEF F     + +  GW      A++  W+  +  +A+ER  E
Sbjct: 81  GYEKSCA----------PEFRFGSPVCSYVDLGWTDTLESAQDMFWRQADFGYARERLGE 130

Query: 67  MQTLSAPEKCRD 32
           ++T+  PE+  D
Sbjct: 131 IRTICQPERASD 142


>sp|Q7VAV8|SURE_PROMA 5'-nucleotidase surE OS=Prochlorococcus
           marinus GN=surE PE=3 SV=1
          Length = 262

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 480 WLWIAGALLSFAEHLSSIGA*QTPWQS---RMELNRASITPFIPDLLLRGN 623
           + W+AG  +   + L S G     W S   ++E N  S+TP  PDL  RGN
Sbjct: 207 YYWLAGEAV---KDLESAGDGPKEWPSDVSQIETNSPSLTPIQPDLFWRGN 254


>sp|O60131|YH7H_SCHPO Uncharacterized transcriptional regulatory
           protein C16G5.17 OS=Schizosaccharomyces pombe
           GN=SPBC16G5.17 PE=2 SV=1
          Length = 560

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 456 RPEKCVQCKPSEEDFNTEISSEKHPLKEKGLPQPFFLAADSTTHQS*RS 310
           R   C +CK SEE     ++ +   L E+ L +P     DS+ HQ  R+
Sbjct: 30  RQYPCSRCKESEESCTYGVNEQAVQLLEEPLSRPITRETDSSAHQETRT 78


>sp|Q14258|TRI25_HUMAN Tripartite motif-containing protein 25
           OS=Homo sapiens GN=TRIM25 PE=1 SV=1
          Length = 630

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 20  HCKEVSAFLWCRKGLHLTAPLLCKSNFCGLPVLFGYPGLSFPACRYQGN 166
           +C +V      +KG+H     L K+NFCG+ + +G      P  R   N
Sbjct: 497 YCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPESRLGRN 545
tr_hit_id A7P0C0
Definition tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 69
Score (bit) 40.8
E-value 0.082
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951373|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_D21, 5'
         (692 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome ...    41   0.082
tr|A5B768|A5B768_VITVI Putative uncharacterized protein OS=Vitis...    41   0.082
tr|A1ZUP3|A1ZUP3_9SPHI Membrane associated lipoprotein OS=Micros...    38   0.53 
tr|A7EXC7|A7EXC7_SCLS1 Putative uncharacterized protein OS=Scler...    35   4.5  
tr|B6LBA4|B6LBA4_BRAFL Putative uncharacterized protein OS=Branc...    35   5.9  

>tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024847001
           PE=4 SV=1
          Length = 223

 Score = 40.8 bits (94), Expect = 0.082
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +2

Query: 482 VVDCRGLIEFCRAFEQYRSMTNSLAVTDGAKQSINNSLHSRSTAKRQLNGAVPHVTSSSS 661
           +VDCR LIEFC+AFEQ+++  + L  +D          H +S  K++++   P       
Sbjct: 1   MVDCRSLIEFCKAFEQHKNKADLLGQSDH---------HIQSRGKKRIDSLNP------- 44

Query: 662 ASPPFCEKS 688
            + PFC  S
Sbjct: 45  LAHPFCHHS 53


>tr|A5B768|A5B768_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037529 PE=4 SV=1
          Length = 228

 Score = 40.8 bits (94), Expect = 0.082
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +2

Query: 482 VVDCRGLIEFCRAFEQYRSMTNSLAVTDGAKQSINNSLHSRSTAKRQLNGAVPHVTSSSS 661
           +VDCR LIEFC+AFEQ+++  + L  +D          H +S  K++++   P       
Sbjct: 6   MVDCRSLIEFCKAFEQHKNKADLLGQSDH---------HIQSRGKKRIDSLNP------- 49

Query: 662 ASPPFCEKS 688
            + PFC  S
Sbjct: 50  LAHPFCHHS 58


>tr|A1ZUP3|A1ZUP3_9SPHI Membrane associated lipoprotein
           OS=Microscilla marina ATCC 23134 GN=M23134_00883 PE=4
           SV=1
          Length = 442

 Score = 38.1 bits (87), Expect = 0.53
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
 Frame = +2

Query: 290 LPLEEGKDLQDWCVVESAARKKGCGSPFSLRGC---FSDEISVLKS-SSEGLHCTHFSGR 457
           L +E+  D+  W  +ESA   KGC +     GC    + ++S +KS +S   +CT F+G+
Sbjct: 105 LSIEQWGDIA-WKSMESAF--KGCNN----MGCPATDAPDLSRVKSLASMFAYCTRFNGK 157

Query: 458 V*DNNQAMVVDCRGLIEFCRAFEQYRSMTNSLAVTD 565
           +   N + V D   + E+ RAF Q     N+  VT+
Sbjct: 158 IGHWNTSQVTDMANMFEYARAFNQPLDQWNTGQVTN 193


>tr|A7EXC7|A7EXC7_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_09988 PE=4 SV=1
          Length = 748

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = -1

Query: 419 KISTQKFHQRSTLSKRRGFHSPSFSQRIQRHTSLEDLCLPRGVNQTMQNSHQNLPKPYT- 243
           K STQK    S  S++        S  I +H+S     LP+ +NQ   +S   +    T 
Sbjct: 58  KQSTQKTSLESKFSQK--------SAGISQHSSENKKALPKALNQAEGSSADGVLASITE 109

Query: 242 --NTGFPEALPSVVS*KISQRARIYFRCYLDICRLESSIPGSQRAL 111
             N   P+ +P+V++ + +  A+++F  Y +    +   P S R L
Sbjct: 110 SDNIECPQPVPTVITVEKAASAKVFFETYYNEITAKPVTPRSLRRL 155


>tr|B6LBA4|B6LBA4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_57388 PE=4 SV=1
          Length = 336

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 48/197 (24%), Positives = 66/197 (33%), Gaps = 21/197 (10%)
 Frame = +2

Query: 149 CRYQGNIENKFWLF-----------ERSFKTLQRAKLLETQC*YRVWAGFDASSASSGLP 295
           C Y      K WL+           ER FK  Q A        ++ W   D         
Sbjct: 62  CVYIQEFRGKPWLWARHDVKPNKQAERRFKKFQSA--------HQAWEVGDKEGPEPTFT 113

Query: 296 LEEGKDL----QDWCVVESAARKKGCGSPFSLRGCFSDEISVLKSSSEGLHCTHFSGRV* 463
              GKDL    + W       R  G   P S  G     + VLK S    HC H +    
Sbjct: 114 WNVGKDLKKPPEHWEPARGVRRIDGQLQPSS-SGHVPGWVPVLKDSRS--HCWHLASTDL 170

Query: 464 DNNQAMVV-----DCRGLIEFCRA-FEQYRSMTNSLAVTDGAKQSINNSLHSRSTAKRQL 625
           D   A+++     DC   +E      E+    T  L  T+     +N + +   + KR +
Sbjct: 171 DKGVALLLQRRKDDCNKTLEVLTVRLEELLGQTLELVGTN-----VNANPYGLGSKKRPV 225

Query: 626 NGAVPHVTSSSSASPPF 676
           +  VPH        PPF
Sbjct: 226 HLLVPHGALKFDTPPPF 242