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BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951403|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_F03, 5' (670 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella paten... 66 2e-09 tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten... 60 9e-08 tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P... 60 2e-07 tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell... 60 2e-07 tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su... 52 3e-05 tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa... 52 3e-05 tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesm... 50 1e-04 tr|B4AUJ5|B4AUJ5_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa... 49 2e-04 tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia ... 49 3e-04 tr|Q8S9C8|Q8S9C8_CYAPA RNA polymerase sigma factor OS=Cyanophora... 49 3e-04 tr|B7KDV7|B7KDV7_9CHRO RNA polymerase, sigma 70 subunit, RpoD su... 49 4e-04 tr|B8LQB0|B8LQB0_PICSI Putative uncharacterized protein OS=Picea... 49 4e-04 tr|B8LLW6|B8LLW6_PICSI Putative uncharacterized protein OS=Picea... 49 4e-04 tr|B1WS32|B1WS32_CYAA5 Group 1 sigma-70 RNA polymerase sigma fac... 48 5e-04 tr|A3ISY9|A3ISY9_9CHRO RNA polymerase sigma factor OS=Cyanothece... 48 5e-04 tr|Q59965|Q59965_SYNP2 RNA polymerase sigma factor OS=Synechococ... 48 6e-04 tr|B0JTP4|B0JTP4_MICAN Group 2 RNA polymerase sigma factor OS=Mi... 48 6e-04 tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su... 48 6e-04 tr|B5VWQ7|B5VWQ7_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa... 48 6e-04 tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa... 48 6e-04 tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana GN... 48 6e-04 tr|B8HPM3|B8HPM3_9CHRO RNA polymerase, sigma 70 subunit, RpoD su... 47 0.001 tr|B4WPM0|B4WPM0_9SYNE RNA polymerase sigma factor, cyanobacteri... 47 0.001 tr|Q53KH8|Q53KH8_ORYSJ Sigma-70 region 3 family protein, express... 47 0.001 tr|Q53KH7|Q53KH7_ORYSJ Os11g0448400 protein OS=Oryza sativa subs... 47 0.001 tr|Q53JE7|Q53JE7_ORYSJ Sigma-70 region 3, putative (Putative unc... 47 0.001 tr|B8AUZ3|B8AUZ3_ORYSI Putative uncharacterized protein OS=Oryza... 47 0.001 tr|Q9L4T2|Q9L4T2_NOSP7 RNA polymerase sigma factor OS=Nostoc pun... 47 0.001 tr|B4W0Y8|B4W0Y8_9CYAN RNA polymerase sigma factor, cyanobacteri... 47 0.001 tr|Q4C7J7|Q4C7J7_CROWT RNA polymerase sigma factor OS=Crocosphae... 46 0.002
>tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_178031 PE=4 SV=1 Length = 583
Score = 65.9 bits (159), Expect = 2e-09 Identities = 45/106 (42%), Positives = 55/106 (51%) Frame = +2
Query: 353 VVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPIRSFL 532 V KSK+K ER+ KR RA K +DPIRS+L Sbjct: 221 VAVKSKRKKERMRKRERALEKAEKTASALASAPPVPKPKKLQIMRTP-----SDPIRSYL 275
Query: 533 NTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPTL 670 +RTKLL+A EEV L+RKIQD+L LE I+ LQ +GREPTL Sbjct: 276 RD--IKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTL 319
>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1 Length = 591
Score = 60.5 bits (145), Expect = 9e-08 Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 2/108 (1%) Frame = +2
Query: 353 VVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPIRSFL 532 V KSK+K ER KR RA K TDP+R++L Sbjct: 226 VAVKSKRKGERRKKRERALEKAEKLATALASAPPAPRPKKPQISQEP-----TDPVRAYL 280
Query: 533 NTNGSRRTKLLTAEEEVELARKIQ--DLLALEAIKVNLQVHLGREPTL 670 G +TKLLTA EEV L+RKIQ DLL LE +K +LQ +GREP++ Sbjct: 281 RDIG--KTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSI 326
>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2 SV=1 Length = 579
Score = 59.7 bits (143), Expect = 2e-07 Identities = 42/121 (34%), Positives = 60/121 (49%) Frame = +2
Query: 308 INENKGQVNVGLTVPVVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXX 487 ++E++ N + V KSK+K ER +R RA + Sbjct: 199 VSEDEDDSNSLPQIQVAVKSKRKGERRKRRERALERAEKVATDLASAPPLPKPKKPQLAA 258
Query: 488 XXXXXXXTDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667 +DP+R++L G RTKLLTA EEV+L+ +IQDLL LE IK NL+ +GR T Sbjct: 259 DP-----SDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNAT 311
Query: 668 L 670 + Sbjct: 312 I 312
>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella patens subsp. patens GN=PpSig2 PE=4 SV=1 Length = 579
Score = 59.7 bits (143), Expect = 2e-07 Identities = 42/121 (34%), Positives = 60/121 (49%) Frame = +2
Query: 308 INENKGQVNVGLTVPVVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXX 487 ++E++ N + V KSK+K ER +R RA + Sbjct: 199 VSEDEDDSNSLPQIQVAVKSKRKGERRKRRERALERAEKVATDLASAPPLPKPKKPQLAA 258
Query: 488 XXXXXXXTDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667 +DP+R++L G RTKLLTA EEV+L+ +IQDLL LE IK NL+ +GR T Sbjct: 259 DP-----SDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNAT 311
Query: 668 L 670 + Sbjct: 312 I 312
>tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD subfamily OS=Synechococcus sp. (strain PCC 8801 / RF-1) GN=PCC8801_0154 PE=4 SV=1 Length = 379
Score = 52.0 bits (123), Expect = 3e-05 Identities = 29/52 (55%), Positives = 35/52 (67%) Frame = +2
Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667 D IR +L G R +LL AEEE+ELARKI DLL LE I+ + H+GR PT Sbjct: 69 DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPT 118
>tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD family OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_2007 PE=4 SV=1 Length = 416
Score = 52.0 bits (123), Expect = 3e-05 Identities = 29/52 (55%), Positives = 35/52 (67%) Frame = +2
Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667 D IR +L G R +LL AEEE+ELARKI DLL LE I+ + H+GR PT Sbjct: 106 DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPT 155
>tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_5068 PE=3 SV=1 Length = 386
Score = 50.4 bits (119), Expect = 1e-04 Identities = 29/51 (56%), Positives = 34/51 (66%) Frame = +2
Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664 D IR +L G R +LL A+EE+ELARKI DLL LE I+ L HL REP Sbjct: 76 DSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERIREELIYHLDREP 124
>tr|B4AUJ5|B4AUJ5_9CHRO RNA polymerase, sigma 70 subunit, RpoD family OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_0037 PE=4 SV=1 Length = 377
Score = 49.3 bits (116), Expect = 2e-04 Identities = 28/52 (53%), Positives = 36/52 (69%) Frame = +2
Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667 D IR +L G R +LL AEEE+ELARKI DLL LE ++ L+ +LGR P+ Sbjct: 67 DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPS 116
>tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia spumigena CCY 9414 GN=N9414_22328 PE=3 SV=1 Length = 391
Score = 48.9 bits (115), Expect = 3e-04 Identities = 28/51 (54%), Positives = 34/51 (66%) Frame = +2
Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664 D IR +L G R +LL A+EE+ELARKI DLL LE ++ LQ L REP Sbjct: 81 DSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERVRDRLQEQLEREP 129
>tr|Q8S9C8|Q8S9C8_CYAPA RNA polymerase sigma factor OS=Cyanophora paradoxa GN=sigB PE=2 SV=1 Length = 427
Score = 48.9 bits (115), Expect = 3e-04 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = +2
Query: 509 TDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664 +D SF+ GS +LL+AEEE+EL+R+I+DL+ LE +K L +GREP Sbjct: 102 SDSFNSFIKEVGS--FELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREP 151
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