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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951403
Clone id TST38A01NGRL0011_F03
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_F03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TGAAGCTGATGCTGCAGCTGCTGTAGCATTGGCTAGAGCTGCTGCCCAAGCTGCCAAAGA
TGCTGCAGCTCTCATAAGCGCAAATGGTTTGCAGAACTCTGCTGAGGATTACTCCTCAGA
ACTGCGTCTTCAACTAGAGAGATTGCGACTGCGCCTCATGGAGAATAACATTTTTGATAC
TGCAGAGGAGCGGTCTATTGGAGTCAGGAATCCGATGGAGGATAGGGATAGTTCTAGGTT
GGGCACCCAGAATTTAGTGTCATTGCCGGAGGTGGACTCTGCCCATGCCATTCAAGGGGG
CTCTCTGATCAATGAAAACAAGGGGCAGGTGAATGTGGGTTTAACAGTACCGGTTGTAGC
CAAATCAAAGAAAAAATGTGAGAGGTTAGCAAAGCGGACACGTGCAAACACAAAGGCTAG
TAACGCAGTGGCAGCAGTCTCTATGGCTGTGACAACTACACCCACAAGACCAAGCAGATC
AAGGAAGAGCAGCCTTCAGAGTGTGTCAACAGATCCCATTAGATCTTTTTTGAATACAAA
TGGTTCGAGAAGGACTAAGCTGCTTACTGCAGAAGAGGAAGTCGAGTTGGCTCGCAAGAT
TCAGGATCTCCTAGCGCTGGAGGCAATAAAGGTAAATTTGCAGGTACATCTTGGCAGGGA
GCCAACATTG
■■Homology search results ■■ -
sp_hit_id P74565
Definition sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803)
Align length 52
Score (bit) 49.3
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951403|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F03, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...    49   2e-05
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...    46   2e-04
sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...    45   5e-04
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...    42   0.004
sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec...    37   0.072
sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4 OS=Synec...    35   0.47 
sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD OS=Enteroc...    34   0.80 
sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synec...    34   0.80 
sp|Q8R4U0|STAB2_MOUSE Stabilin-2 OS=Mus musculus GN=Stab2 PE=1 SV=1    33   1.0  
sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococ...    33   1.0  
sp|O66381|RPOD_BACHD RNA polymerase sigma factor rpoD OS=Bacillu...    33   1.0  
sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena s...    32   2.3  
sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor rpoD OS=Staphyl...    32   2.3  
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb...    32   3.0  
sp|A1L251|ENASE_DANRE Cytosolic endo-beta-N-acetylglucosaminidas...    32   3.0  
sp|P0A2E3|RPOD_SALTY RNA polymerase sigma factor rpoD OS=Salmone...    31   5.2  
sp|P0A2E4|RPOD_SALTI RNA polymerase sigma factor rpoD OS=Salmone...    31   5.2  
sp|P52331|RPOD_LISMO RNA polymerase sigma factor rpoD OS=Listeri...    31   5.2  
sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor rpoD OS=Listeri...    31   5.2  
sp|P00579|RPOD_ECOLI RNA polymerase sigma factor rpoD OS=Escheri...    31   5.2  
sp|Q89B10|RPOD_BUCBP RNA polymerase sigma factor rpoD OS=Buchner...    31   5.2  
sp|P52327|RPOD_PSEPU RNA polymerase sigma factor rpoD OS=Pseudom...    31   6.8  

>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 28/52 (53%), Positives = 36/52 (69%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D IR +L   G  R +LL AEEE+ELAR+I DLL LE I+ NL + L R+P+
Sbjct: 71  DSIRIYLQEIG--RIRLLRAEEEIELARQIADLLELELIRDNLTLQLERQPS 120


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 26/51 (50%), Positives = 33/51 (64%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664
           D IR +L   G  R +LL A+EE+ELARKI DLL LE ++  L   L R+P
Sbjct: 80  DSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERVRERLSEKLERDP 128


>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D IR +L   G  R +LL A+EE+ELAR+I DLLALE I+  L   L R P+
Sbjct: 89  DSIRLYLQEIG--RIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPS 138


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIK 631
           D IR +L   G  R +LL AEEE+ELARKI DLL LE I+
Sbjct: 67  DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLKLERIR 104


>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2
           PE=1 SV=1
          Length = 320

 Score = 37.4 bits (85), Expect = 0.072
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D +R++L   G  R +LLTAEEE+   R++Q L+ L   +  L+  LG EP+
Sbjct: 11  DLVRAYLQEIG--RVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPS 60


>sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4
           PE=3 SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 0.47
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 509 TDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLAL 619
           +D +  +L++ G  R  LLTAEEEVEL+RK+Q ++AL
Sbjct: 18  SDHVSWYLSSIG--RIPLLTAEEEVELSRKVQLMMAL 52


>sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD
           OS=Enterococcus faecalis GN=rpoD PE=3 SV=2
          Length = 368

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQD 607
           DP+R +L   G  R +LLTA EEVELA KI++
Sbjct: 97  DPVRMYLKEIG--RVQLLTAAEEVELALKIEE 126


>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3
           PE=3 SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 509 TDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLG-REPT 667
           +D +R++L   G  R  LLT EEEV L +++Q  + L+ ++  LQ   G R+P+
Sbjct: 9   SDLVRTYLREIG--RVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPS 60


>sp|Q8R4U0|STAB2_MOUSE Stabilin-2 OS=Mus musculus GN=Stab2 PE=1 SV=1
          Length = 2559

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +1

Query: 241 GH--PEFSVIAGGGLCPCHSRGLSDQ*KQGAGEC----GFNSTGC 357
           GH  P+     GG   PC  RG+ D+  +G G C    GF  T C
Sbjct: 111 GHWGPDCMECPGGARAPCGGRGVCDEGMEGTGSCSCRAGFRGTAC 155


>sp|P17531|RPOD_MYXXA RNA polymerase sigma factor rpoD OS=Myxococcus
           xanthus GN=rpoD PE=3 SV=1
          Length = 708

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQD-----LLALEAIKVNLQ 643
           DP+R +L   GS    LLT E EVE+A++I+D     L AL A KV ++
Sbjct: 197 DPVRLYLRKMGS--VSLLTREGEVEIAKRIEDGEKEVLRALLACKVAVE 243
tr_hit_id A9RTR6
Definition tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 106
Score (bit) 65.9
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951403|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F03, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten...    60   9e-08
tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P...    60   2e-07
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell...    60   2e-07
tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...    52   3e-05
tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...    52   3e-05
tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesm...    50   1e-04
tr|B4AUJ5|B4AUJ5_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...    49   2e-04
tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia ...    49   3e-04
tr|Q8S9C8|Q8S9C8_CYAPA RNA polymerase sigma factor OS=Cyanophora...    49   3e-04
tr|B7KDV7|B7KDV7_9CHRO RNA polymerase, sigma 70 subunit, RpoD su...    49   4e-04
tr|B8LQB0|B8LQB0_PICSI Putative uncharacterized protein OS=Picea...    49   4e-04
tr|B8LLW6|B8LLW6_PICSI Putative uncharacterized protein OS=Picea...    49   4e-04
tr|B1WS32|B1WS32_CYAA5 Group 1 sigma-70 RNA polymerase sigma fac...    48   5e-04
tr|A3ISY9|A3ISY9_9CHRO RNA polymerase sigma factor OS=Cyanothece...    48   5e-04
tr|Q59965|Q59965_SYNP2 RNA polymerase sigma factor OS=Synechococ...    48   6e-04
tr|B0JTP4|B0JTP4_MICAN Group 2 RNA polymerase sigma factor OS=Mi...    48   6e-04
tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...    48   6e-04
tr|B5VWQ7|B5VWQ7_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa...    48   6e-04
tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...    48   6e-04
tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana GN...    48   6e-04
tr|B8HPM3|B8HPM3_9CHRO RNA polymerase, sigma 70 subunit, RpoD su...    47   0.001
tr|B4WPM0|B4WPM0_9SYNE RNA polymerase sigma factor, cyanobacteri...    47   0.001
tr|Q53KH8|Q53KH8_ORYSJ Sigma-70 region 3 family protein, express...    47   0.001
tr|Q53KH7|Q53KH7_ORYSJ Os11g0448400 protein OS=Oryza sativa subs...    47   0.001
tr|Q53JE7|Q53JE7_ORYSJ Sigma-70 region 3, putative (Putative unc...    47   0.001
tr|B8AUZ3|B8AUZ3_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|Q9L4T2|Q9L4T2_NOSP7 RNA polymerase sigma factor OS=Nostoc pun...    47   0.001
tr|B4W0Y8|B4W0Y8_9CYAN RNA polymerase sigma factor, cyanobacteri...    47   0.001
tr|Q4C7J7|Q4C7J7_CROWT RNA polymerase sigma factor OS=Crocosphae...    46   0.002

>tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178031 PE=4 SV=1
          Length = 583

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 45/106 (42%), Positives = 55/106 (51%)
 Frame = +2

Query: 353 VVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPIRSFL 532
           V  KSK+K ER+ KR RA  K                               +DPIRS+L
Sbjct: 221 VAVKSKRKKERMRKRERALEKAEKTASALASAPPVPKPKKLQIMRTP-----SDPIRSYL 275

Query: 533 NTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPTL 670
                +RTKLL+A EEV L+RKIQD+L LE I+  LQ  +GREPTL
Sbjct: 276 RD--IKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTL 319


>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1
          Length = 591

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = +2

Query: 353 VVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPIRSFL 532
           V  KSK+K ER  KR RA  K                               TDP+R++L
Sbjct: 226 VAVKSKRKGERRKKRERALEKAEKLATALASAPPAPRPKKPQISQEP-----TDPVRAYL 280

Query: 533 NTNGSRRTKLLTAEEEVELARKIQ--DLLALEAIKVNLQVHLGREPTL 670
              G  +TKLLTA EEV L+RKIQ  DLL LE +K +LQ  +GREP++
Sbjct: 281 RDIG--KTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSI 326


>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
           SV=1
          Length = 579

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 42/121 (34%), Positives = 60/121 (49%)
 Frame = +2

Query: 308 INENKGQVNVGLTVPVVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXX 487
           ++E++   N    + V  KSK+K ER  +R RA  +                        
Sbjct: 199 VSEDEDDSNSLPQIQVAVKSKRKGERRKRRERALERAEKVATDLASAPPLPKPKKPQLAA 258

Query: 488 XXXXXXXTDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
                  +DP+R++L   G  RTKLLTA EEV+L+ +IQDLL LE IK NL+  +GR  T
Sbjct: 259 DP-----SDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNAT 311

Query: 668 L 670
           +
Sbjct: 312 I 312


>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
           patens subsp. patens GN=PpSig2 PE=4 SV=1
          Length = 579

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 42/121 (34%), Positives = 60/121 (49%)
 Frame = +2

Query: 308 INENKGQVNVGLTVPVVAKSKKKCERLAKRTRANTKXXXXXXXXXXXXXXXXXXXXXXXX 487
           ++E++   N    + V  KSK+K ER  +R RA  +                        
Sbjct: 199 VSEDEDDSNSLPQIQVAVKSKRKGERRKRRERALERAEKVATDLASAPPLPKPKKPQLAA 258

Query: 488 XXXXXXXTDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
                  +DP+R++L   G  RTKLLTA EEV+L+ +IQDLL LE IK NL+  +GR  T
Sbjct: 259 DP-----SDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNAT 311

Query: 668 L 670
           +
Sbjct: 312 I 312


>tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD
           subfamily OS=Synechococcus sp. (strain PCC 8801 / RF-1)
           GN=PCC8801_0154 PE=4 SV=1
          Length = 379

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D IR +L   G  R +LL AEEE+ELARKI DLL LE I+  +  H+GR PT
Sbjct: 69  DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPT 118


>tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD
           family OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_2007
           PE=4 SV=1
          Length = 416

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D IR +L   G  R +LL AEEE+ELARKI DLL LE I+  +  H+GR PT
Sbjct: 106 DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPT 155


>tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesmium
           erythraeum (strain IMS101) GN=Tery_5068 PE=3 SV=1
          Length = 386

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664
           D IR +L   G  R +LL A+EE+ELARKI DLL LE I+  L  HL REP
Sbjct: 76  DSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERIREELIYHLDREP 124


>tr|B4AUJ5|B4AUJ5_9CHRO RNA polymerase, sigma 70 subunit, RpoD
           family OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_0037
           PE=4 SV=1
          Length = 377

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 28/52 (53%), Positives = 36/52 (69%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREPT 667
           D IR +L   G  R +LL AEEE+ELARKI DLL LE ++  L+ +LGR P+
Sbjct: 67  DSIRIYLQEIG--RIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPS 116


>tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia
           spumigena CCY 9414 GN=N9414_22328 PE=3 SV=1
          Length = 391

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 28/51 (54%), Positives = 34/51 (66%)
 Frame = +2

Query: 512 DPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664
           D IR +L   G  R +LL A+EE+ELARKI DLL LE ++  LQ  L REP
Sbjct: 81  DSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERVRDRLQEQLEREP 129


>tr|Q8S9C8|Q8S9C8_CYAPA RNA polymerase sigma factor OS=Cyanophora
           paradoxa GN=sigB PE=2 SV=1
          Length = 427

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 25/52 (48%), Positives = 36/52 (69%)
 Frame = +2

Query: 509 TDPIRSFLNTNGSRRTKLLTAEEEVELARKIQDLLALEAIKVNLQVHLGREP 664
           +D   SF+   GS   +LL+AEEE+EL+R+I+DL+ LE +K  L   +GREP
Sbjct: 102 SDSFNSFIKEVGS--FELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREP 151