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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951408
Clone id TST38A01NGRL0011_F08
Library
Length 625
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_F08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGTTATGGGAGTTCCCTCGCTCTCGACATGCGGAACGCAAAGGGCCTTGCAACAGGCGA
GTGCCGTTCAAATGAAGAGCGTCATGACTCCTGGAGCAACGCGAGCTGCTCTCTCCTGGC
CTAGGCCGTTTGGGCACATGCCCTCTCTGGCTCTACGATATACCCCCCGTCCTCTATACT
CGCCATGTCGTGCGCAAGCATCATCAAATATCACATTTCACTTCGACAATACTGCTATCA
CGGTGCCTTTGTCACAAGATGCAGCAGTCGGGCTTTCAAAGCGATTGAAAATGTTCTTAA
CACTTTCCGAGAAAAGGAGAAAGCTGCAAGACCTCGCCGATGGGAAACCATGGAATTCAG
GCACACAGATGAGGGGGTATACGTTGAGCTCTTTTGTAATCCCAATGCATATGCAAATTT
CTTCCAGGCCAAGGTGTTGATTACTGTTAATGATGAGAAGCTGAAGATTGTAACAGAGGC
GCAGCTTAGTGCAATAAAGGCGGAGGTAGAGCAGTATGTCAAGGCCAAGGTTTAGGGTCT
CATTGCAGCCCCTGTTGTTACCGCAAGAATTTTTTGTCAAAACGGATTCCTCACATGTCA
TGAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P0AE90
Definition sp|P0AE90|CPXR_SHIFL Transcriptional regulatory protein cpxR OS=Shigella flexneri
Align length 53
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951408|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F08, 5'
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0AE90|CPXR_SHIFL Transcriptional regulatory protein cpxR OS=...    33   1.5  
sp|P0AE88|CPXR_ECOLI Transcriptional regulatory protein cpxR OS=...    33   1.5  
sp|P0AE89|CPXR_ECO57 Transcriptional regulatory protein cpxR OS=...    33   1.5  
sp|Q10258|MTHR1_SCHPO Methylenetetrahydrofolate reductase 1 OS=S...    32   1.9  
sp|P29347|MTS1_STRSA Modification methylase StsI OS=Streptococcu...    31   5.5  
sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN ...    30   9.4  
sp|Q10130|DHS5_CAEEL Uncharacterized oxidoreductase dhs-5 OS=Cae...    30   9.4  

>sp|P0AE90|CPXR_SHIFL Transcriptional regulatory protein cpxR
           OS=Shigella flexneri GN=cpxR PE=3 SV=1
          Length = 232

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 249 LSQDAAVGLSKRLKMF-----LTLSEKRRKLQDLADGKPWNSGTQMRGYTLSS 392
           LSQ+    L KRL  F     + +S  RRKL D  DG PW    + RGY + S
Sbjct: 181 LSQEV---LGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230


>sp|P0AE88|CPXR_ECOLI Transcriptional regulatory protein cpxR
           OS=Escherichia coli (strain K12) GN=cpxR PE=1 SV=1
          Length = 232

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 249 LSQDAAVGLSKRLKMF-----LTLSEKRRKLQDLADGKPWNSGTQMRGYTLSS 392
           LSQ+    L KRL  F     + +S  RRKL D  DG PW    + RGY + S
Sbjct: 181 LSQEV---LGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230


>sp|P0AE89|CPXR_ECO57 Transcriptional regulatory protein cpxR
           OS=Escherichia coli O157:H7 GN=cpxR PE=3 SV=1
          Length = 232

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 249 LSQDAAVGLSKRLKMF-----LTLSEKRRKLQDLADGKPWNSGTQMRGYTLSS 392
           LSQ+    L KRL  F     + +S  RRKL D  DG PW    + RGY + S
Sbjct: 181 LSQEV---LGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230


>sp|Q10258|MTHR1_SCHPO Methylenetetrahydrofolate reductase 1
           OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1
          Length = 603

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 432 LAWKKFAYALGLQKSSTYTPSSVCLNSMVS 343
           LAWK  AY+LG++ ++ Y+P S+    +VS
Sbjct: 530 LAWKDEAYSLGMEWANAYSPDSISRKLLVS 559


>sp|P29347|MTS1_STRSA Modification methylase StsI OS=Streptococcus
           sanguis GN=stsIM PE=3 SV=1
          Length = 653

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 359 RHTD--EGVYVELFCNPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYVKAKV 532
           +HTD  E V+++LF   N  AN+F+    +  ND        A     KA +E   K   
Sbjct: 20  KHTDGSEEVFLDLFAGTNVVANYFKQFYTVYSNDMLFFSYVNA-----KATIENNSKPSF 74

Query: 533 *GLIAAPVVTARIFCQN 583
             LI A + +   + QN
Sbjct: 75  SKLIQAGISSPMTYLQN 91


>sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1
            SV=2
          Length = 900

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 15   PSLSTCGT--QRALQQASAVQMKSVMTPGATRAALSWPRPFGHMPSLALRYTPRPLYSPC 188
            P +  C    +R ++    VQ   +      + +LS  R +GH+  L   + P P   PC
Sbjct: 812  PQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWGHLVPLQEAWGPPP--GPC 869

Query: 189  RAQASSN 209
            R ++ SN
Sbjct: 870  RTESPSN 876


>sp|Q10130|DHS5_CAEEL Uncharacterized oxidoreductase dhs-5
           OS=Caenorhabditis elegans GN=dhs-5 PE=2 SV=2
          Length = 378

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -3

Query: 573 KILAVTTGAAMRP*TLALTYCSTSAFIALSCASV--TIFSFSSLTVINTLAWKKFAYALG 400
           +I+ +++   +RP  +   YC+T A +   C S+     + +  T+I  L   K  Y   
Sbjct: 219 QIVVLSSSQGVRPIPMLAAYCATKALMTFLCESIDREYSTINVQTLIPALVATKMTY--- 275

Query: 399 LQKSSTY--TPSSVC 361
             K ST+  TP + C
Sbjct: 276 YTKGSTFVVTPENFC 290
tr_hit_id A9S6P8
Definition tr|A9S6P8|A9S6P8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 73
Score (bit) 96.7
E-value 9.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951408|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F08, 5'
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S6P8|A9S6P8_PHYPA Predicted protein OS=Physcomitrella paten...    97   9e-19
tr|B4B7M9|B4B7M9_9CHRO Putative uncharacterized protein OS=Cyano...    70   9e-11
tr|A8YDU0|A8YDU0_MICAE Similar to tr|P74219|P74219 OS=Microcysti...    70   1e-10
tr|B0JUE3|B0JUE3_MICAN Putative uncharacterized protein OS=Micro...    69   2e-10
tr|B5VW25|B5VW25_SPIMA Putative uncharacterized protein OS=Arthr...    68   5e-10
tr|B1WST6|B1WST6_CYAA5 Putative uncharacterized protein OS=Cyano...    67   8e-10
tr|Q4BV86|Q4BV86_CROWT Putative uncharacterized protein OS=Croco...    67   8e-10
tr|B7KF77|B7KF77_9CHRO Putative uncharacterized protein OS=Cyano...    67   1e-09
tr|B7JX97|B7JX97_SYNP8 Putative uncharacterized protein OS=Synec...    67   1e-09
tr|A3IMR8|A3IMR8_9CHRO Putative uncharacterized protein OS=Cyano...    66   1e-09
tr|B4VNH6|B4VNH6_9CYAN Putative uncharacterized protein OS=Micro...    66   2e-09
tr|B4BWY1|B4BWY1_9CHRO Putative uncharacterized protein OS=Cyano...    64   5e-09
tr|A0YTP4|A0YTP4_9CYAN Putative uncharacterized protein OS=Lyngb...    63   1e-08
tr|B8HSW3|B8HSW3_9CHRO Putative uncharacterized protein OS=Cyano...    62   2e-08
tr|P74219|P74219_SYNY3 Slr1533 protein OS=Synechocystis sp. (str...    61   4e-08
tr|Q8DL44|Q8DL44_THEEB Tlr0654 protein OS=Thermosynechococcus el...    61   6e-08
tr|Q110L7|Q110L7_TRIEI Putative uncharacterized protein OS=Trich...    61   6e-08
tr|B1XLD6|B1XLD6_SYNP2 Putative uncharacterized protein OS=Synec...    61   6e-08
tr|B2J9F8|B2J9F8_NOSP7 Putative uncharacterized protein OS=Nosto...    58   4e-07
tr|Q8Z0M6|Q8Z0M6_ANASP All0065 protein OS=Anabaena sp. (strain P...    57   6e-07
tr|Q3M9Q6|Q3M9Q6_ANAVT Putative uncharacterized protein OS=Anaba...    57   8e-07
tr|B0BZQ4|B0BZQ4_ACAM1 Putative uncharacterized protein OS=Acary...    57   8e-07
tr|Q2JK34|Q2JK34_SYNJB Putative uncharacterized protein OS=Synec...    55   3e-06
tr|A0ZC07|A0ZC07_NODSP Putative uncharacterized protein OS=Nodul...    55   4e-06
tr|Q7NPI5|Q7NPI5_GLOVI Gll0070 protein OS=Gloeobacter violaceus ...    49   2e-04
tr|Q2JSM5|Q2JSM5_SYNJA Putative uncharacterized protein OS=Synec...    49   3e-04
tr|Q5N3I8|Q5N3I8_SYNP6 Putative uncharacterized protein OS=Synec...    46   0.001
tr|Q31QQ6|Q31QQ6_SYNE7 Putative uncharacterized protein OS=Synec...    46   0.001
tr|A8J3P7|A8J3P7_CHLRE Predicted protein (Fragment) OS=Chlamydom...    38   0.52 
tr|B4H2U9|B4H2U9_DROPE GL26908 OS=Drosophila persimilis GN=GL269...    37   0.88 

>tr|A9S6P8|A9S6P8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_75300 PE=4 SV=1
          Length = 454

 Score = 96.7 bits (239), Expect = 9e-19
 Identities = 42/73 (57%), Positives = 56/73 (76%)
 Frame = +2

Query: 281 AIENVLNTFREKEKAARPRRWETMEFRHTDEGVYVELFCNPNAYANFFQAKVLITVNDEK 460
           AI ++L TFREKEKA RPRRW+ ME+R  ++GV+ E+FCNPNA+A  FQAK L+T+ND+K
Sbjct: 235 AIADLLTTFREKEKAERPRRWDNMEYRQIEDGVFFEVFCNPNAHATAFQAKYLVTINDDK 294

Query: 461 LKIVTEAQLSAIK 499
           L+I +E      K
Sbjct: 295 LRIASEGMCGFFK 307



 Score = 35.0 bits (79), Expect = 3.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 198 ASSNITFHFDNTAITVPLSQDAAVGLSKRLKMFLTLSEKRRKLQ 329
           A + ITFH   T++++P S D+A GLS  +   LT   ++ K +
Sbjct: 207 AMAPITFHIGETSLSIPFSLDSAKGLSAAIADLLTTFREKEKAE 250


>tr|B4B7M9|B4B7M9_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 7822 GN=Cyan7822DRAFT_4545 PE=3
           SV=1
          Length = 114

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
 Frame = +2

Query: 242 GAFVTRCSSRAFKAIENVLNTFREKEKA--------ARPRRWETMEFRHTDEGVYVELFC 397
           GA     +  A  +++  +N   E  KA         +P   + ME+RHT E V++E+FC
Sbjct: 11  GAVSFSFTVEAALSLKQEINQLMESLKAIAVNTSTGGKPTPKKAMEYRHTGE-VFLEVFC 69

Query: 398 NPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYVK 523
           NPN Y + F AKVL+TV DE++++ TEA+L+ +  ++EQY++
Sbjct: 70  NPNIYPSPFAAKVLLTVRDERIRLTTEAELTRLIEDLEQYLE 111


>tr|A8YDU0|A8YDU0_MICAE Similar to tr|P74219|P74219 OS=Microcystis
           aeruginosa PCC 7806 GN=IPF_3491 PE=4 SV=1
          Length = 114

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
 Frame = +2

Query: 242 GAFVTRCSSRAFKAIENVLNTFREKEKA--------ARPRRWETMEFRHTDEGVYVELFC 397
           G+   R S  A   ++  +N   ++ KA         +P+  + +E++HT + V++E+FC
Sbjct: 11  GSVTFRFSPSAALDLQREINILLDRLKAIASNAASGGKPQPQKPLEYQHTGD-VFLEVFC 69

Query: 398 NPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYV 520
           NPN Y N F AKVL+TV D++L++ TEA+L+ +  ++E+Y+
Sbjct: 70  NPNIYPNPFSAKVLLTVRDDRLRLTTEAELTRVIEDLERYI 110


>tr|B0JUE3|B0JUE3_MICAN Putative uncharacterized protein
           OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_45690
           PE=4 SV=1
          Length = 114

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
 Frame = +2

Query: 242 GAFVTRCSSRAFKAIENVLNTFREKEKA--------ARPRRWETMEFRHTDEGVYVELFC 397
           G+   R S  A   ++  +N   E+ KA         +P+  + +E++HT + V++E+FC
Sbjct: 11  GSVTFRFSPSAALDLQREINILLERLKAIASNAASGGKPQPQKPLEYQHTGD-VFLEVFC 69

Query: 398 NPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYV 520
           NPN Y + F AKVL+TV D++L++ TEA+L+ +  ++E+Y+
Sbjct: 70  NPNIYPSPFSAKVLLTVRDDRLRLTTEAELTRVIEDLERYI 110


>tr|B5VW25|B5VW25_SPIMA Putative uncharacterized protein
           OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_0717 PE=4 SV=1
          Length = 116

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 30/65 (46%), Positives = 51/65 (78%)
 Frame = +2

Query: 329 RPRRWETMEFRHTDEGVYVELFCNPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEV 508
           RP   ++ME+++T + V++E+FCNPN + + F AKVLITV D+++K+ TEA+L+ I  +V
Sbjct: 50  RPTPQKSMEYQYTGD-VFLEVFCNPNIWPSLFAAKVLITVRDDRIKLTTEAELTQILNDV 108

Query: 509 EQYVK 523
           +QY++
Sbjct: 109 QQYLE 113


>tr|B1WST6|B1WST6_CYAA5 Putative uncharacterized protein
           OS=Cyanothece (strain ATCC 51142) GN=cce_0915 PE=4 SV=1
          Length = 114

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 31/65 (47%), Positives = 50/65 (76%)
 Frame = +2

Query: 329 RPRRWETMEFRHTDEGVYVELFCNPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEV 508
           RP+  + ME+R+T E V++E+FCNPN Y + F AKVL+TV D+K+++ TEA+L+ I  ++
Sbjct: 48  RPQPEKPMEYRYTGE-VFLEVFCNPNIYPSPFAAKVLLTVRDDKIRLTTEAELTRIIEDL 106

Query: 509 EQYVK 523
            QY++
Sbjct: 107 GQYLE 111


>tr|Q4BV86|Q4BV86_CROWT Putative uncharacterized protein
           OS=Crocosphaera watsonii GN=CwatDRAFT_0358 PE=4 SV=1
          Length = 114

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 31/65 (47%), Positives = 50/65 (76%)
 Frame = +2

Query: 329 RPRRWETMEFRHTDEGVYVELFCNPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEV 508
           RP+  + ME+R+T E V++E+FCNPN Y + F AKVL+TV D+K+++ TEA+L+ I  ++
Sbjct: 48  RPQPEKPMEYRYTGE-VFLEVFCNPNIYPSPFAAKVLLTVRDDKIRLTTEAELTRIIEDL 106

Query: 509 EQYVK 523
            QY++
Sbjct: 107 GQYLE 111


>tr|B7KF77|B7KF77_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 7424 GN=PCC7424_3398 PE=4 SV=1
          Length = 114

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
 Frame = +2

Query: 242 GAFVTRCSSRAFKAIENVLNTFREKEKA--------ARPRRWETMEFRHTDEGVYVELFC 397
           G+     S  A   ++  +N   E  KA         +P   + ME+ HT E V++E+FC
Sbjct: 11  GSVTFNFSPEAALKLKQEINQLMETLKAIALNTSSGGKPTPKKAMEYCHTGE-VFLEVFC 69

Query: 398 NPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYVK 523
           NPN Y + F AKVL+TV DE++++ TEA+L+ +  +++QY++
Sbjct: 70  NPNIYPSPFAAKVLLTVRDERIRLTTEAELTRVIEDLDQYLQ 111


>tr|B7JX97|B7JX97_SYNP8 Putative uncharacterized protein
           OS=Synechococcus sp. (strain PCC 8801 / RF-1)
           GN=PCC8801_3104 PE=4 SV=1
          Length = 114

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
 Frame = +2

Query: 242 GAFVTRCSSRAFKAIENVLNTFREKEKA--------ARPRRWETMEFRHTDEGVYVELFC 397
           GA     SS A K +++ ++      KA         RP+  + ME+ HT + V++E+FC
Sbjct: 11  GAVTFNFSSEAAKRLKDQIDQLMTSLKAIASQSTTGGRPQPQKPMEYTHTGD-VFLEVFC 69

Query: 398 NPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEVEQYV 520
           NPN Y + F AKVL+TV DE++++ TEA+L+ +  ++  Y+
Sbjct: 70  NPNIYPSPFAAKVLVTVRDERIRLTTEAELTRLIEDLGDYL 110


>tr|A3IMR8|A3IMR8_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. CCY 0110 GN=CY0110_24711 PE=4 SV=1
          Length = 114

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = +2

Query: 329 RPRRWETMEFRHTDEGVYVELFCNPNAYANFFQAKVLITVNDEKLKIVTEAQLSAIKAEV 508
           RP+  + ME+R+T E +++E+FCNPN Y + F AKVL+TV D+K+++ TEA+L+ +  ++
Sbjct: 48  RPKPEKPMEYRYTGE-IFLEVFCNPNIYPSPFAAKVLLTVRDDKIRLTTEAELTRLIEDL 106

Query: 509 EQYVK 523
            QY++
Sbjct: 107 GQYLE 111