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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951419
Clone id TST38A01NGRL0011_F19
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_F19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAAGATCTTGCCGCTTTGGAAAAGGACTATTAGGAGGTTGGAGCTGAGTCTGCCGATGGT
TTTAACGTCGAGACTGAAGAGTATTGATGATGAAAGCTGCATGCAATCATTATCTAAACT
ACTGATTATTAGTAGCTCAGGAGCCAGGGCAGTTATCTTTTTTTCTCTTTAAAATTTCAA
AGAATGCCTCGCCGGGGCTTCTGTTTAAGCGGGGAGTGTATCAGTGTGCTTGGGTTTGAT
GTATCTTTCTTAATTATTATCATACGGATTTGTGCTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6VAG0
Definition sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum
Align length 28
Score (bit) 42.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951419|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F19, 5'
         (278 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum...    42   7e-04
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA...    41   0.002
sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum...    41   0.002
sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain OS=Oryza sativa subsp...    40   0.003
sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain OS=Caenorhabditis ele...    40   0.004
sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=...    40   0.005
sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thalia...    39   0.006
sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain OS=Eleusine indica GN...    39   0.006
sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidopsi...    39   0.006
sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1       39   0.011
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Onc...    39   0.011
sp|P06605|TBA3_DROME Tubulin alpha-3 chain OS=Drosophila melanog...    39   0.011
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain OS=Homarus americanus...    39   0.011
sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanog...    39   0.011
sp|P33625|TBA_EUGGR Tubulin alpha chain OS=Euglena gracilis GN=T...    38   0.014
sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA ...    38   0.014
sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 ...    38   0.014
sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 ...    38   0.014
sp|Q40831|TBA1_PELFA Tubulin alpha-1 chain OS=Pelvetia fastigiat...    38   0.014
sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain OS=Hordeum vulgare GN...    38   0.014
sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus ...    38   0.014
sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=...    38   0.014
sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus grise...    38   0.014
sp|Q27352|TBA_TRYCR Tubulin alpha chain OS=Trypanosoma cruzi PE=...    38   0.018
sp|P04106|TBA_TRYBR Tubulin alpha chain OS=Trypanosoma brucei rh...    38   0.018
sp|P20363|TBA3_ARATH Tubulin alpha-3/alpha-5 chain OS=Arabidopsi...    38   0.018
sp|P09205|TBA2_CHLRE Tubulin alpha-2 chain OS=Chlamydomonas rein...    38   0.018
sp|P11481|TBA1_VOLCA Tubulin alpha-1/alpha-2 chain OS=Volvox car...    38   0.018
sp|P46259|TBA1_PEA Tubulin alpha-1 chain OS=Pisum sativum GN=TUB...    38   0.018
sp|P09204|TBA1_CHLRE Tubulin alpha-1 chain OS=Chlamydomonas rein...    38   0.018

>sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 450

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G   E +EY
Sbjct: 423 EDLAALEKDYEEVGAESAEGDEGEDDEY 450


>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA
           PE=2 SV=1
          Length = 450

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + E ++Y
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDDEGDDY 450


>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum
           PE=2 SV=1
          Length = 450

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAES +G   + EEY
Sbjct: 423 EDLAALEKDYEEVGAESGEGDEGDEEEY 450


>sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain OS=Oryza sativa subsp.
           japonica GN=TUBA1 PE=1 SV=1
          Length = 450

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAE AD  N + E+Y
Sbjct: 423 EDLAALEKDYEEVGAEGADDENDDGEDY 450


>sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain OS=Caenorhabditis
           elegans GN=tba-2 PE=2 SV=1
          Length = 448

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/28 (71%), Positives = 22/28 (78%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGA+S +G   E EEY
Sbjct: 421 EDLAALEKDYEEVGADSNEGGEEEGEEY 448


>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens
           GN=TUBA1C PE=1 SV=1
          Length = 449

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           ED+AALEKDY EVGA+SADG + E EEY
Sbjct: 423 EDMAALEKDYEEVGADSADGED-EGEEY 449


>sp|P29511|TBA6_ARATH Tubulin alpha-6 chain OS=Arabidopsis thaliana
           GN=TUBA6 PE=2 SV=1
          Length = 450

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAE  D  + E EEY
Sbjct: 423 EDLAALEKDYEEVGAEGGDDEDDEGEEY 450


>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain OS=Eleusine indica
           GN=TUBA3 PE=2 SV=1
          Length = 450

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAE AD    E E+Y
Sbjct: 423 EDLAALEKDYEEVGAEGADDEGDEGEDY 450


>sp|P29510|TBA2_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidopsis
           thaliana GN=TUBA2 PE=2 SV=1
          Length = 450

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAE  D  + E EEY
Sbjct: 423 EDLAALEKDYEEVGAEGGDDEDDEGEEY 450


>sp|P52273|TBA_BOMMO Tubulin alpha chain OS=Bombyx mori PE=2 SV=1
          Length = 450

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVG +SA+G     EEY
Sbjct: 423 EDLAALEKDYEEVGMDSAEGEGEGAEEY 450
tr_hit_id B7UD05
Definition tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan
Align length 28
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951419|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_F19, 5'
         (278 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan PE=2 SV=1    44   0.003
tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Popul...    43   0.009
tr|Q9SQ74|Q9SQ74_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    42   0.012
tr|Q9SQ73|Q9SQ73_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    42   0.012
tr|Q7Y246|Q7Y246_GOSBA Alpha-tubulin (Fragment) OS=Gossypium bar...    42   0.012
tr|Q2MIR4|Q2MIR4_CAMSI Alpha tubulin 1 OS=Camellia sinensis GN=T...    42   0.012
tr|Q1EMQ0|Q1EMQ0_PLAMJ Alpha tubulin (Fragment) OS=Plantago majo...    42   0.012
tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1     42   0.012
tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    42   0.012
tr|A8DSD0|A8DSD0_POPTM Alpha-tubulin 7 OS=Populus tremuloides PE...    42   0.012
tr|A7QH45|A7QH45_VITVI Chromosome chr3 scaffold_95, whole genome...    42   0.012
tr|A5AEW2|A5AEW2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|A7PMS7|A7PMS7_VITVI Chromosome chr14 scaffold_21, whole genom...    42   0.016
tr|B2BGT6|B2BGT6_OLEEU Putative alpha-tubulin (Fragment) OS=Olea...    42   0.020
tr|A5YRY0|A5YRY0_POPTM Alpha-tubulin 3 OS=Populus tremuloides PE...    42   0.020
tr|A9PDP4|A9PDP4_POPTR Putative uncharacterized protein OS=Popul...    41   0.026
tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Popul...    41   0.026
tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE...    41   0.026
tr|Q5EB23|Q5EB23_XENTR MGC97820 protein OS=Xenopus tropicalis GN...    41   0.035
tr|Q9SQ72|Q9SQ72_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    41   0.035
tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    41   0.035
tr|Q0PVB0|Q0PVB0_ORYSJ Os07g0574800 protein OS=Oryza sativa subs...    40   0.045
tr|A6MZU0|A6MZU0_ORYSI Tubulin alpha-1 chain (Fragment) OS=Oryza...    40   0.045
tr|A2YMX5|A2YMX5_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.045
tr|Q91831|Q91831_XENLA Alpha-tubulin OS=Xenopus laevis GN=tuba3d...    40   0.059
tr|Q5U4V6|Q5U4V6_XENLA LOC397931 protein OS=Xenopus laevis GN=LO...    40   0.059
tr|Q9SQ75|Q9SQ75_GOSHI Alpha-tubulin (Fragment) OS=Gossypium hir...    40   0.059
tr|Q6UBL2|Q6UBL2_BRANA Putative tubulin alpha-2/alpha-4 chain OS...    40   0.059
tr|Q39719|Q39719_EUCGL Alpha-tubulin (Fragment) OS=Eucalyptus gl...    40   0.059
tr|A9PL15|A9PL15_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU...    40   0.059

>tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan PE=2 SV=1
          Length = 450

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + E EEY
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDDENEEY 450


>tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 451

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + + EEY
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDEDGEEY 450


>tr|Q9SQ74|Q9SQ74_GOSHI Alpha-tubulin (Fragment) OS=Gossypium
           hirsutum GN=TubA2 PE=2 SV=1
          Length = 132

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G   E +EY
Sbjct: 105 EDLAALEKDYEEVGAESAEGDEGEDDEY 132


>tr|Q9SQ73|Q9SQ73_GOSHI Alpha-tubulin (Fragment) OS=Gossypium
           hirsutum GN=TubA3 PE=2 SV=1
          Length = 132

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G   E +EY
Sbjct: 105 EDLAALEKDYEEVGAESAEGDEGEDDEY 132


>tr|Q7Y246|Q7Y246_GOSBA Alpha-tubulin (Fragment) OS=Gossypium
           barbadense PE=2 SV=1
          Length = 108

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G   E +EY
Sbjct: 81  EDLAALEKDYEEVGAESAEGDEGEDDEY 108


>tr|Q2MIR4|Q2MIR4_CAMSI Alpha tubulin 1 OS=Camellia sinensis GN=Tua1
           PE=2 SV=2
          Length = 450

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + E +EY
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDDEGDEY 450


>tr|Q1EMQ0|Q1EMQ0_PLAMJ Alpha tubulin (Fragment) OS=Plantago major
           GN=tua1 PE=2 SV=1
          Length = 270

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + E +EY
Sbjct: 243 EDLAALEKDYEEVGAESAEGEDDEGDEY 270


>tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1
          Length = 450

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + E +EY
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDDEGDEY 450


>tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA9
           PE=2 SV=1
          Length = 450

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G   E +EY
Sbjct: 423 EDLAALEKDYEEVGAESAEGDEGEDDEY 450


>tr|A8DSD0|A8DSD0_POPTM Alpha-tubulin 7 OS=Populus tremuloides PE=2
           SV=1
          Length = 451

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   EDLAALEKDY*EVGAESADGFNVETEEY 84
           EDLAALEKDY EVGAESA+G + + EEY
Sbjct: 423 EDLAALEKDYEEVGAESAEGEDDDGEEY 450