| DK951433 |
| Clone id |
TST38A01NGRL0011_G09 |
| Library |
TST38 |
| Length |
673 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_G09. 5' end sequence. |
| Accession |
DK951433 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
GTTTTATCTGGTAATGAGAGTCAGGATAATGGGAGTAACATCCCAGAGGCTTTTTTCACA AATGGTGGCTTAAAGCTTCGAGTTGTATGGACGATCAGCTCCCTCATAGCTGCTTCTGCC AGACATTATCTTCTTCAGCAAATCATATCTGACCATCCAGCATTAGAGAGTCTGGTGCTT GCGGATGCAGATGGCCAAGGCACTCTTTGCATGAACAAAGAACAGCTTCTGGACTTCAAG ATCAACCCCATTGCTGCATCTGCTTCGACAAACAGGACACAGGTGCCCGCTCTCAATATC AAGCTGTGGTATGCCCCTGTGTTGGACCACAAGGACGGATTCACGATGAAAGGTGCTACA CTCATTGCCATCCGTCCCAGTGATCTTTTGGTGAAGGAAGACTTGGAGAACCTTCTCATG AATGCCTTTGACGAGCCTTTCTGCAATGCTGCAGGCTTATTGGCTCGAAGGCGCACATAC TTGTTGGAAATGAACTCATTTTAACTTCATGGTATGTAATAGATCCATGGCACTGTGTGG TAGCCGCCGTGAGATGATGTACACGGAGATGAGAAGTTGTAGCTAAATACAACTCGACAT CTATGGCCAGTAAACAAAGTGTGAGAAGCTGTTACATGTTGATCCTTTTAGATGTGGTTT GATTACAGGGCGC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9FNK5 |
| Definition |
sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana |
| Align length |
164 |
| Score (bit) |
206.0 |
| E-value |
1.0e-52 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9SUJ4 |
| Definition |
tr|A9SUJ4|A9SUJ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
159 |
| Score (bit) |
229.0 |
| E-value |
1.0e-58 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951433|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_G09, 5' (673 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SUJ4|A9SUJ4_PHYPA Predicted protein OS=Physcomitrella paten... 229 1e-58 tr|A9S511|A9S511_PHYPA Predicted protein OS=Physcomitrella paten... 228 3e-58 tr|A9NW74|A9NW74_PICSI Putative uncharacterized protein OS=Picea... 224 4e-57 tr|A7Q164|A7Q164_VITVI Chromosome chr10 scaffold_43, whole genom... 202 2e-50 tr|A5ATM2|A5ATM2_VITVI Putative uncharacterized protein OS=Vitis... 202 2e-50 tr|A2WW91|A2WW91_ORYSI Putative uncharacterized protein OS=Oryza... 193 9e-48 tr|Q5VQR7|Q5VQR7_ORYSJ cDNA clone:001-032-H05, full insert seque... 192 2e-47 tr|Q7F2I4|Q7F2I4_ORYSJ P0432B10.4 protein OS=Oryza sativa subsp.... 189 1e-46 tr|B6U4I0|B6U4I0_MAIZE F-box domain containing protein OS=Zea ma... 189 2e-46 tr|Q6F324|Q6F324_ORYSJ Os05g0490300 protein OS=Oryza sativa subs... 187 7e-46 tr|A2Y602|A2Y602_ORYSI Putative uncharacterized protein OS=Oryza... 187 7e-46 tr|B6THH4|B6THH4_MAIZE F-box domain containing protein OS=Zea ma... 186 9e-46 tr|B4F9W2|B4F9W2_MAIZE Putative uncharacterized protein OS=Zea m... 186 2e-45 tr|B7ZXY7|B7ZXY7_MAIZE Putative uncharacterized protein OS=Zea m... 185 2e-45 tr|B6SJC0|B6SJC0_MAIZE F-box domain containing protein OS=Zea ma... 185 2e-45 tr|B4FTA6|B4FTA6_MAIZE Putative uncharacterized protein OS=Zea m... 185 2e-45 tr|B8AA52|B8AA52_ORYSI Putative uncharacterized protein OS=Oryza... 185 3e-45 tr|Q94EE7|Q94EE7_ORYSJ cDNA clone:001-016-E07, full insert seque... 184 3e-45 tr|A2ZY87|A2ZY87_ORYSJ Putative uncharacterized protein OS=Oryza... 184 3e-45 tr|Q6L541|Q6L541_ORYSJ Os05g0510400 protein OS=Oryza sativa subs... 182 1e-44 tr|A2Y6E6|A2Y6E6_ORYSI Putative uncharacterized protein OS=Oryza... 182 2e-44 tr|Q10M69|Q10M69_ORYSJ Os03g0321300 protein OS=Oryza sativa subs... 181 5e-44 tr|A3AHF1|A3AHF1_ORYSJ Putative uncharacterized protein OS=Oryza... 181 5e-44 tr|B8ANE3|B8ANE3_ORYSI Putative uncharacterized protein OS=Oryza... 180 8e-44 tr|B6TU48|B6TU48_MAIZE F-box domain containing protein OS=Zea ma... 177 4e-43 tr|B4FGY9|B4FGY9_MAIZE Putative uncharacterized protein OS=Zea m... 177 4e-43 tr|B6TX12|B6TX12_MAIZE F-box domain containing protein OS=Zea ma... 171 3e-41 tr|B6TYD4|B6TYD4_MAIZE F-box domain containing protein OS=Zea ma... 170 9e-41 tr|B6SHT5|B6SHT5_MAIZE F-box domain containing protein OS=Zea ma... 167 6e-40 tr|A7PQY4|A7PQY4_VITVI Chromosome chr6 scaffold_25, whole genome... 110 6e-23
>tr|A9SUJ4|A9SUJ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_188559 PE=4 SV=1 Length = 348
Score = 229 bits (584), Expect = 1e-58 Identities = 112/159 (70%), Positives = 132/159 (83%) Frame = +1
Query: 25 DNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQGT 204 D IPE+F+T+GGLK+RVVWTISSLIAASARHYLLQQIISDHP LESLVL DADGQG Sbjct: 190 DESGTIPESFYTDGGLKVRVVWTISSLIAASARHYLLQQIISDHPTLESLVLTDADGQGM 249
Query: 205 LCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPSD 384 LCMNKEQL +F+ P+AASAS+NRTQVPALN+KLWYAP L+ +G +KGATL+AIRPS+ Sbjct: 250 LCMNKEQLREFRDKPLAASASSNRTQVPALNMKLWYAPYLELPEGTGLKGATLVAIRPSE 309
Query: 385 LLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 +++ EN + AF+EPF A LL +RRTYLLEMNSF Sbjct: 310 QSARKEAENFVSGAFEEPFKTATNLLVKRRTYLLEMNSF 348
>tr|A9S511|A9S511_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_162882 PE=4 SV=1 Length = 346
Score = 228 bits (580), Expect = 3e-58 Identities = 112/159 (70%), Positives = 131/159 (82%) Frame = +1
Query: 25 DNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQGT 204 D IPE+F+T+GGLK+RVVWTISSLIAASARHYLLQQIISDHP LESLVL DADGQG Sbjct: 188 DESGTIPESFYTDGGLKVRVVWTISSLIAASARHYLLQQIISDHPTLESLVLTDADGQGM 247
Query: 205 LCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPSD 384 LCMNKEQL +F+ P+AASAS+NRTQVPALN+KLWYAP L+ G +KGATL+AIRPS+ Sbjct: 248 LCMNKEQLREFRDKPLAASASSNRTQVPALNMKLWYAPYLELPGGTGLKGATLVAIRPSE 307
Query: 385 LLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 ++ EN ++ AF+EPF A LL +RRTYLLEMNSF Sbjct: 308 QPAHKETENFVLGAFEEPFKTATNLLVKRRTYLLEMNSF 346
>tr|A9NW74|A9NW74_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 361
Score = 224 bits (571), Expect = 4e-57 Identities = 111/163 (68%), Positives = 133/163 (81%) Frame = +1
Query: 13 NESQDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADAD 192 NE D+ NIPE+F+T+GGLKLRVVWTISSLIAASARHYLLQQIISDHP L++LVL DAD Sbjct: 199 NEGLDDNGNIPESFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDAD 258
Query: 193 GQGTLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAI 372 GQG LCM K QL +F+ P+AASA+ +RTQVPALN+KLWYAP L+ +G M+GATL++I Sbjct: 259 GQGMLCMGKAQLREFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSI 318
Query: 373 RPSDLLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 RPSD +K+D E L AFDEPF AA + ++RTYLLEMNSF Sbjct: 319 RPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNSF 361
>tr|A7Q164|A7Q164_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028329001 PE=4 SV=1 Length = 399
Score = 202 bits (513), Expect = 2e-50 Identities = 103/166 (62%), Positives = 133/166 (80%), Gaps = 3/166 (1%) Frame = +1
Query: 13 NESQDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADAD 192 N DNGS IPE+F+TNGGLKLRVVWTISSLIAASARHYLLQ II++H L+SLVL DAD Sbjct: 235 NGGDDNGS-IPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDAD 293
Query: 193 GQGTLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAI 372 GQG LCMN++QL + ++ P++AS+++ RT VPALN++LWYAP L+ DG +KGATL+AI Sbjct: 294 GQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGIVLKGATLVAI 353
Query: 373 RPSDLLV-KEDLE--NLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 RPS+ V K+++ + + AF+EP+ AA +L +RRTY LEMNSF Sbjct: 354 RPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 399
>tr|A5ATM2|A5ATM2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042179 PE=4 SV=1 Length = 399
Score = 202 bits (513), Expect = 2e-50 Identities = 103/166 (62%), Positives = 133/166 (80%), Gaps = 3/166 (1%) Frame = +1
Query: 13 NESQDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADAD 192 N DNGS IPE+F+TNGGLKLRVVWTISSLIAASARHYLLQ II++H L+SLVL DAD Sbjct: 235 NGGDDNGS-IPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHKTLDSLVLTDAD 293
Query: 193 GQGTLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAI 372 GQG LCMN++QL + ++ P++AS+++ RT VPALN++LWYAP L+ DG +KGATL+AI Sbjct: 294 GQGVLCMNRDQLEELRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGIVLKGATLVAI 353
Query: 373 RPSDLLV-KEDLE--NLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 RPS+ V K+++ + + AF+EP+ AA +L +RRTY LEMNSF Sbjct: 354 RPSEQSVTKKEVSDGSWVSAAFEEPYGTAAKMLVKRRTYCLEMNSF 399
>tr|A2WW91|A2WW91_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04173 PE=4 SV=1 Length = 353
Score = 193 bits (490), Expect = 9e-48 Identities = 103/166 (62%), Positives = 125/166 (75%), Gaps = 6/166 (3%) Frame = +1
Query: 22 QDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQG 201 +DNGS IPE+F+TNGGLKLRVVWTISSLIAAS RHYLL+ II DHP L SLVLADADGQG Sbjct: 189 EDNGS-IPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQG 247
Query: 202 TLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPS 381 TL M EQL +F+ N ++ASA +NRTQVPA N+KL YAP L+ G T++GATL+ I+PS Sbjct: 248 TLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPS 307
Query: 382 D------LLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 + +++ E + +AFDEPF A L +RRTYLLEMN F Sbjct: 308 NDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
>tr|Q5VQR7|Q5VQR7_ORYSJ cDNA clone:001-032-H05, full insert sequence OS=Oryza sativa subsp. japonica GN=P0425G02.24 PE=2 SV=1 Length = 353
Score = 192 bits (487), Expect = 2e-47 Identities = 102/166 (61%), Positives = 125/166 (75%), Gaps = 6/166 (3%) Frame = +1
Query: 22 QDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQG 201 +DNGS +PE+F+TNGGLKLRVVWTISSLIAAS RHYLL+ II DHP L SLVLADADGQG Sbjct: 189 EDNGS-MPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQG 247
Query: 202 TLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPS 381 TL M EQL +F+ N ++ASA +NRTQVPA N+KL YAP L+ G T++GATL+ I+PS Sbjct: 248 TLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPS 307
Query: 382 D------LLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 + +++ E + +AFDEPF A L +RRTYLLEMN F Sbjct: 308 NDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMNGF 353
>tr|Q7F2I4|Q7F2I4_ORYSJ P0432B10.4 protein OS=Oryza sativa subsp. japonica GN=P0432B10.4 PE=4 SV=1 Length = 451
Score = 189 bits (481), Expect = 1e-46 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 6/164 (3%) Frame = +1
Query: 22 QDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQG 201 +DNGS +PE+F+TNGGLKLRVVWTISSLIAAS RHYLL+ II DHP L SLVLADADGQG Sbjct: 281 EDNGS-MPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQG 339
Query: 202 TLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPS 381 TL M EQL +F+ N ++ASA +NRTQVPA N+KL YAP L+ G T++GATL+ I+PS Sbjct: 340 TLYMGMEQLREFRENKLSASACSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPS 399
Query: 382 D------LLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMN 495 + +++ E + +AFDEPF A L +RRTYLLEMN Sbjct: 400 NDGGSGGHSSRKETEAFVSSAFDEPFRFAVKALMKRRTYLLEMN 443
>tr|B6U4I0|B6U4I0_MAIZE F-box domain containing protein OS=Zea mays PE=2 SV=1 Length = 354
Score = 189 bits (479), Expect = 2e-46 Identities = 100/166 (60%), Positives = 123/166 (74%), Gaps = 6/166 (3%) Frame = +1
Query: 22 QDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQG 201 +DNGS +PE+F+TNGGLKLRVVWTISSLIAAS RHYLL+ II+DHP L SLVL DADGQG Sbjct: 190 EDNGS-MPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIINDHPTLLSLVLTDADGQG 248
Query: 202 TLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRPS 381 TLCM EQL +F+ N ++ASA +NRTQVPA N+KL YAP L+ G ++GATL+AI+PS Sbjct: 249 TLCMGAEQLKEFRENQLSASACSNRTQVPACNMKLKYAPYLELPGGMALQGATLVAIKPS 308
Query: 382 ------DLLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 +++ + + AFD PF A L +RRTYLLEMN F Sbjct: 309 PDGSNGSHPNRKEADAFVFGAFDGPFKAAVKALMKRRTYLLEMNGF 354
>tr|Q6F324|Q6F324_ORYSJ Os05g0490300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088I06.3 PE=2 SV=1 Length = 351
Score = 187 bits (474), Expect = 7e-46 Identities = 100/167 (59%), Positives = 122/167 (73%), Gaps = 6/167 (3%) Frame = +1
Query: 19 SQDNGSNIPEAFFTNGGLKLRVVWTISSLIAASARHYLLQQIISDHPALESLVLADADGQ 198 S+DNGS +PE+F+TNGGLKLRVVWTISSLIAAS RHYLL+ II DHP L SLVL DADGQ Sbjct: 186 SEDNGS-MPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSIIKDHPTLTSLVLTDADGQ 244
Query: 199 GTLCMNKEQLLDFKINPIAASASTNRTQVPALNIKLWYAPVLDHKDGFTMKGATLIAIRP 378 GTL M EQL +F+ N ++ASA +NRTQVPA N+KL YAP L+ G ++GATL+AI+P Sbjct: 245 GTLSMGAEQLKEFRENQLSASACSNRTQVPACNMKLKYAPYLELPGGIALQGATLVAIKP 304
Query: 379 S------DLLVKEDLENLLMNAFDEPFCNAAGLLARRRTYLLEMNSF 501 S +++ + + AFD PF A L +RRTYLLEMN F Sbjct: 305 SPEGSNGGHTSRKETDAFVSGAFDGPFKFAVKALMKRRTYLLEMNGF 351
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