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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951435
Clone id TST38A01NGRL0011_G11
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_G11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCCCTTCTGTTTCCGAGCTCGACCTTGAAGAGGAAGTCAGCCGCATTGACATGGATCCT
GCTAAGATGATGCAGCCTGCCGACCCTGGTGCCATGCAAGCAGTTATCAAAGAAGTCATG
CCTGTTGGTTACTTTTGTACCCTGCCCTCAGGCAGGATCGGCTACCTCCCTGCTCAGGAT
TTAGGGTTTACAGGTGGGCTTGCGATCCTGCAGCGGCTCTTCAAAGAGGGGCAAGAGATA
ACTGTACGCATTGTATGCAGAGGGGGTGCTGGCAGAGAAATTATTTCTTGCAAAAAACCT
GAGTTTGCTCCCCCCAGTGAACAAAAGACAATCGAGAGCTTGCGCCTTCATTTTGAGAAT
GAGAAGAAGAACATGGGAAGACCTCGCAGGCGGTGATATCAAATGGCTGGACATAGTATT
ATTACCCATTTTGAGTGCAGCATTGAACCCAAGTTACTACTACTGGCTACAGCTTCAAGA
GTCAATTCATACCCATAAACTGATAGCTGAAGCCAGGTAGAGACTGTAGCTTGGCATATA
GTCGAAGTCGGGTCCTTGTGTGTGTGCATTTAGCCCATCCAATCCTAGGTTCTAAGTATA
AAGATTTCTAATAGAAAGCTACCTTA
■■Homology search results ■■ -
sp_hit_id Q4ZQ33
Definition sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein OS=Pseudomonas syringae pv. syringae (strain B728a)
Align length 52
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951435|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_G11, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein OS=Pseud...    33   1.2  
sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gal...    33   1.6  
sp|Q48FG6|DCTA_PSE14 C4-dicarboxylate transport protein OS=Pseud...    33   1.6  
sp|Q8N127|O5AS1_HUMAN Olfactory receptor 5AS1 OS=Homo sapiens GN...    32   2.7  
sp|Q9I4F5|DCTA2_PSEAE C4-dicarboxylate transport protein 2 OS=Ps...    32   3.5  
sp|Q02J03|DCTA2_PSEAB C4-dicarboxylate transport protein 2 OS=Ps...    32   3.5  
sp|A6V915|DCTA2_PSEA7 C4-dicarboxylate transport protein 2 OS=Ps...    32   3.5  
sp|A7HH69|MURB_ANADF UDP-N-acetylenolpyruvoylglucosamine reducta...    31   4.5  
sp|Q885Z9|DCTA_PSESM C4-dicarboxylate transport protein OS=Pseud...    31   4.5  
sp|Q9UJA2|CRLS1_HUMAN Cardiolipin synthetase OS=Homo sapiens GN=...    31   4.5  

>sp|Q4ZQ33|DCTA_PSEU2 C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. syringae (strain B728a)
           GN=dctA PE=3 SV=1
          Length = 450

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           D  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 31  DTGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQSMKSVGKTGGYALL 81


>sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gallus
            gallus GN=SORL1 PE=2 SV=1
          Length = 1592

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 60   C*DDAACRPWCHASSYQRSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQRGARD 239
            C DD  CR W   ++      C    +  L    +P        RWACD  A  Q G+ +
Sbjct: 1084 CDDDNDCRDWSDEANCTMFRTCEASSFQCLNGHCIPQ-------RWACDGDADCQDGSDE 1136

Query: 240  NCTHCMQR 263
            + T C ++
Sbjct: 1137 DPTICEKK 1144


>sp|Q48FG6|DCTA_PSE14 C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=dctA PE=3 SV=1
          Length = 460

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           D  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 41  DTGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQNMKSVGKTGGYALL 91


>sp|Q8N127|O5AS1_HUMAN Olfactory receptor 5AS1 OS=Homo sapiens
           GN=OR5AS1 PE=2 SV=1
          Length = 324

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 409 GHSIITHFECSIEPKLLLLATASRVNSYP*TDS*SQVETVAWHIVEVGSLCVCI*PIQS* 588
           G +I+ HF C I P L L  T +++N        S ++T  + ++ +   C+ I      
Sbjct: 170 GSNIVNHFFCDIPPLLALSCTDTQINQLLLFALCSFIQTSTFVVIFISYFCILI-----T 224

Query: 589 VLSIKIS 609
           VLSIK S
Sbjct: 225 VLSIKSS 231


>sp|Q9I4F5|DCTA2_PSEAE C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa GN=dctA2 PE=3 SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|Q02J03|DCTA2_PSEAB C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dctA2
           PE=3 SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|A6V915|DCTA2_PSEA7 C4-dicarboxylate transport protein 2
           OS=Pseudomonas aeruginosa (strain PA7) GN=dctA2 PE=3
           SV=1
          Length = 436

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           + A  M+P   G ++ +   + P+  FCT+ +G  G    + +G TGG+A+L
Sbjct: 30  ETAVAMKPFGDGFVKLIKMAIAPI-IFCTVVTGIAGMQSMKSVGKTGGMALL 80


>sp|A7HH69|MURB_ANADF UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=murB PE=3
           SV=1
          Length = 318

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +1

Query: 67  MMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRLFKEGQEITV 246
           +++PADPGA+ A+++ V  +    T+  G    L A D G  G +  L + F E      
Sbjct: 46  LVRPADPGALAALLRAVRELSVPLTILGGGANTLVA-DAGVRGVVLRLPQGFGEEARDGE 104

Query: 247 RIVCRGGA 270
           R+V   GA
Sbjct: 105 RLVLGAGA 112


>sp|Q885Z9|DCTA_PSESM C4-dicarboxylate transport protein
           OS=Pseudomonas syringae pv. tomato GN=dctA-1 PE=3 SV=1
          Length = 460

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 55  DPAKMMQPADPGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAIL 210
           +  K ++P   G ++ +   + P+  FCT+ SG  G    + +G TGG A+L
Sbjct: 41  ETGKALKPLGDGFIKLIKMVIAPI-IFCTVVSGIAGMQNMKSVGKTGGYALL 91


>sp|Q9UJA2|CRLS1_HUMAN Cardiolipin synthetase OS=Homo sapiens
           GN=CRLS1 PE=2 SV=1
          Length = 301

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +3

Query: 87  WCHASSYQRSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQR----GARDNCT 248
           W   +   +  ACW LL P      +P C G    RW   PAA   R    G R++C+
Sbjct: 19  WAPGTRPSKRRACWALLPP------VPCCLGCLAERWRLRPAALGLRLPGIGQRNHCS 70
tr_hit_id Q28CX7
Definition tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis
Align length 111
Score (bit) 38.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951435|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_G11, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis G...    39   0.33 
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    36   1.6  
tr|Q498G4|Q498G4_XENLA Septin OS=Xenopus laevis GN=MGC115227 PE=...    36   2.1  
tr|B6KDC7|B6KDC7_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.8  
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    35   3.7  
tr|Q7N8H9|Q7N8H9_PHOLL Similar to unknown protein YgcB of Escher...    35   4.8  
tr|A9SQF4|A9SQF4_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.8  
tr|Q1YL08|Q1YL08_MOBAS Nickel resistance protein, permease of ma...    34   6.2  

>tr|Q28CX7|Q28CX7_XENTR Septin (Fragment) OS=Xenopus tropicalis
           GN=TTpA012i10.1-001 PE=2 SV=1
          Length = 417

 Score = 38.5 bits (88), Expect = 0.33
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
 Frame = +1

Query: 85  PGAMQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRL----FKEGQEITVRI 252
           PG M   I+++   G    LP+  +G  PA + G+ G  AIL+++     K+G E+ + +
Sbjct: 79  PGTMTDAIRDI---GVKQPLPARGVGEKPATEFGYVGIDAILEQMRKKAMKQGFELNIMV 135

Query: 253 VCRGGAGREII-------SCKKPEFAPPSEQ---KTIESLRLHFENEKKNM 375
           V + G G+  +          +    P +E+   KTIE   +  E E+K +
Sbjct: 136 VGQSGLGKSTLINTLFKSKVSRKSVQPTAEERIPKTIEIKSVTHEIEEKGV 186


>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
           SV=1
          Length = 616

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +1

Query: 106 IKEVMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRLFKEGQEITVRIVCRGGAGREII 285
           I +++  G    LPSG  G++PA  L   GG+  +   FK G E+ ++++      + II
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVIEFDRENKRII 544

Query: 286 SCKKPEFAPPSEQKTIESLRLH 351
                 F   S+++  E ++ H
Sbjct: 545 LSALEYFKGKSKEEIEEYMKQH 566


>tr|Q498G4|Q498G4_XENLA Septin OS=Xenopus laevis GN=MGC115227 PE=2
           SV=1
          Length = 336

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
 Frame = +1

Query: 115 VMPVGYFCTLPSGRIGYLPAQDLGFTGGLAILQRL----FKEGQEITVRIVCRGGAGREI 282
           +  +G    LP+  +G  PA + G+ G  AIL+++     K+G E+ + +V + G G+  
Sbjct: 5   IRDIGVKQPLPARGVGEKPATEFGYVGIDAILEQMRKKAMKQGFELNIMVVGQSGLGKST 64

Query: 283 I-------SCKKPEFAPPSEQ---KTIESLRLHFENEKKNM 375
           +          +    P +E+   KTIE   +  E E+K +
Sbjct: 65  LINTLFKSKVSRKSVQPTAEERIPKTIEIKSIAHEIEEKGV 105


>tr|B6KDC7|B6KDC7_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_072160 PE=4 SV=1
          Length = 3553

 Score = 35.4 bits (80), Expect = 2.8
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = -3

Query: 366  LLILKMKAQALDCLLFTGGSKLRFFARNNFSASTPSAYNAYSYLLPLFEEPLQDRKPTCK 187
            LL+L  KA+  DCL   GG+   F          PS   A   L  L   PLQ +KP C+
Sbjct: 1692 LLLLLEKAEKADCLQSEGGAPSHF---------APSRAAASGALPSLRVAPLQGKKPVCQ 1742

Query: 186  P*ILSREVADP 154
              +L+  V  P
Sbjct: 1743 ALVLAAAVVLP 1753


>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 94  MQAVIKEVMPVGYFCTLPSGRIGYLPAQDLGFTG-GLAILQRLFKEGQEITVRIVCRGGA 270
           ++  +K +   G F +LP G  G+LP  +    G G  +     + GQE++VR++ R   
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 271 GREIISCKKPEFAPPSEQKTIESL 342
           G+  ++ KK E A   + K  E +
Sbjct: 325 GQVTLTMKKEEDAEKLDLKLGEGV 348


>tr|Q7N8H9|Q7N8H9_PHOLL Similar to unknown protein YgcB of
           Escherichia coli OS=Photorhabdus luminescens subsp.
           laumondii GN=plu0745 PE=4 SV=1
          Length = 905

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -3

Query: 420 NTMSSHLISPPARSSHVLLLILKMKAQALDCLLFTGGSKLRFFARNNFSASTPSAYNAYS 241
           N ++ HL    +       L  K + +  D  L  GG   +   +N+F  +T  + NA  
Sbjct: 470 NLLALHLYQGGSAVLLTATLTFKQRQRLTDIWLNVGGLSSQLLQKNDFPLATKISLNA-- 527

Query: 240 YLLPLFEEPLQDRK 199
            +LP+ E+PL  RK
Sbjct: 528 -ILPVIEQPLSSRK 540


>tr|A9SQF4|A9SQF4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82528 PE=4 SV=1
          Length = 763

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 90  CHASSYQ-----RSHACWLLLYPALRQDRLPPCSGFRVYRWACDPAAALQRGARDNCTHC 254
           CH SS       RSH   +L Y   +  + P C  FR  R A +P   L    R++CTHC
Sbjct: 526 CHRSSQANDGGLRSH---VLAYQTFQVAK-PQCQCFRQLRTAAEPPQELYFEGRNSCTHC 581

Query: 255 MQR 263
             R
Sbjct: 582 KAR 584


>tr|Q1YL08|Q1YL08_MOBAS Nickel resistance protein, permease of major
           facilitator superfamily, NreB OS=Manganese-oxidizing
           bacterium (strain SI85-9A1) GN=SI859A1_01768 PE=4 SV=1
          Length = 460

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 69  DAACRPWCHASSYQRSHACWLLLYPA 146
           DA  RP   A+ +  SHACWL+ YPA
Sbjct: 332 DADSRPAVFAAQFALSHACWLVTYPA 357