DK951441 |
Clone id |
TST38A01NGRL0011_G17 |
Library |
TST38 |
Length |
689 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_G17. 5' end sequence. |
Accession |
DK951441 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
GGGCGTAGAAGCAAAAAGCTTCTGCCATAGCCGAAAACTGTCAAAGCTTTCGAATTTCCC TCATTATTTTAGGACCTGCGCCTTCGTCAGAGTGAAGCGTAGGGAGCTTCCAACAGAGAA CTCTCTGTTTCTGGAGTGCTAATAGCTATTCTTCCCAATAGGGCTCCTGGCATCACTGCC ATAGCCGTACCTCGGTGCGAGTGCACGCTTTGTGCAGAGAAAGGGGGAGGAGATGAGCTT TGATGGAGGCGTGCAACCCAACCCTCGAGGCCAGCAAGGGAACCCTGCCATCGATGCTTC GTCCAAGCAGTCCACACCCATGTCCAATCCAGTGGAAACCCATTCAGTTGCCCGCAGGTT GCAATCGGAGCTCATGGCTTTGATGACATGTGGTGATCCGGGGGTTTCAGCTTTCCCCGA GGGGGACAATATCTTCTCTTGGATTGGCACCATCAAAGGCAGTGCAGGAACTGTGTACGA TGGTTTGTCCTATAAGTTATCACTAAGATTCCCAACTGAATATCCTTTCAAGTCACCCAC TGTGAAATTTGACACGCCATGCTTTCATCCAAATGTAGATCAATATGGCAACATATGCCT AGACATACTGCAGGACAAATGGTCCTCTGCCTATGATGTGAGAACCATCTTGTTGTCAAT CCAAAGTCTTCTAGGAGAGCCCAATAACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LJZ5 |
Definition |
sp|Q9LJZ5|UBC19_ARATH Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana |
Align length |
128 |
Score (bit) |
197.0 |
E-value |
3.0e-50 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T770 |
Definition |
tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
131 |
Score (bit) |
226.0 |
E-value |
1.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951441|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_G17, 5' (689 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella paten... 226 1e-57 tr|Q9LIY1|Q9LIY1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa... 206 9e-52 tr|B6TP88|B6TP88_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 206 9e-52 tr|B6SR07|B6SR07_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 206 9e-52 tr|A5BHQ5|A5BHQ5_VITVI Ubiquitin carrier protein OS=Vitis vinife... 204 6e-51 tr|A9PAG1|A9PAG1_POPTR Ubiquitin carrier protein OS=Populus tric... 203 7e-51 tr|B6TEH3|B6TEH3_MAIZE Ubiquitin-conjugating enzyme X OS=Zea may... 203 1e-50 tr|A9PD53|A9PD53_POPTR Ubiquitin carrier protein OS=Populus tric... 202 1e-50 tr|B4FCG1|B4FCG1_MAIZE Putative uncharacterized protein OS=Zea m... 201 3e-50 tr|A5AE59|A5AE59_VITVI Ubiquitin carrier protein OS=Vitis vinife... 201 3e-50 tr|A4RZK1|A4RZK1_OSTLU Ubiquitin carrier protein (Fragment) OS=O... 190 6e-47 tr|B7FMR9|B7FMR9_MEDTR Putative uncharacterized protein OS=Medic... 189 2e-46 tr|B6NJK8|B6NJK8_BRAFL Putative uncharacterized protein OS=Branc... 187 4e-46 tr|A0PJP2|A0PJP2_XENTR Ubiquitin carrier protein OS=Xenopus trop... 187 7e-46 tr|Q5I005|Q5I005_XENLA Ubiquitin carrier protein OS=Xenopus laev... 186 1e-45 tr|A2WNC8|A2WNC8_ORYSI Ubiquitin carrier protein OS=Oryza sativa... 186 1e-45 tr|Q3UWQ1|Q3UWQ1_MOUSE Ubiquitin carrier protein OS=Mus musculus... 183 8e-45 tr|A2A4Z1|A2A4Z1_MOUSE Ubiquitin carrier protein OS=Mus musculus... 183 8e-45 tr|A2A4Z0|A2A4Z0_MOUSE Ubiquitin carrier protein OS=Mus musculus... 183 8e-45 tr|Q174Z9|Q174Z9_AEDAE Ubiquitin carrier protein OS=Aedes aegypt... 181 3e-44 tr|Q5TZN3|Q5TZN3_HUMAN Ubiquitin carrier protein OS=Homo sapiens... 181 4e-44 tr|Q9PVW3|Q9PVW3_CARAU Ubiquitin carrier protein OS=Carassius au... 180 9e-44 tr|Q3B745|Q3B745_DANRE Ubiquitin carrier protein OS=Danio rerio ... 179 2e-43 tr|B2R4U3|B2R4U3_HUMAN cDNA, FLJ92217, highly similar to Homo sa... 179 2e-43 tr|B3RV97|B3RV97_TRIAD Putative uncharacterized protein OS=Trich... 178 3e-43 tr|B5XE03|B5XE03_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 176 1e-42 tr|B5X5V5|B5X5V5_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 176 1e-42 tr|B5XFH6|B5XFH6_SALSA Ubiquitin-conjugating enzyme E2 C OS=Salm... 176 2e-42 tr|Q7Q5S2|Q7Q5S2_ANOGA Ubiquitin carrier protein OS=Anopheles ga... 173 8e-42 tr|Q2M0M1|Q2M0M1_DROPS Ubiquitin carrier protein OS=Drosophila p... 173 8e-42
>tr|A9T770|A9T770_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_110248 PE=3 SV=1 Length = 184
Score = 226 bits (575), Expect = 1e-57 Identities = 106/131 (80%), Positives = 118/131 (90%) Frame = +2
Query: 296 ASSKQSTPMSNPVETHSVARRLQSELMALMTCGDPGVSAFPEGDNIFSWIGTIKGSAGTV 475 A+ K P S V++HSV+RRLQSELM+LM GDPG+SAFPEGDNIFSWIGTIKGS GTV Sbjct: 20 AAGKLPKPASQLVDSHSVSRRLQSELMSLMMSGDPGISAFPEGDNIFSWIGTIKGSNGTV 79
Query: 476 YDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLDILQDKWSSAYDVRTILL 655 Y+GLSYKL+L+FPT+YPFK P VKFDT CFHPNVDQ+GNICLDILQDKWSSAYDVRT+LL Sbjct: 80 YEGLSYKLTLKFPTDYPFKPPVVKFDTLCFHPNVDQFGNICLDILQDKWSSAYDVRTVLL 139
Query: 656 SIQSLLGEPNN 688 SIQSLLGEPNN Sbjct: 140 SIQSLLGEPNN 150
>tr|Q9LIY1|Q9LIY1_ORYSJ Ubiquitin carrier protein OS=Oryza sativa subsp. japonica GN=P0693B08.33 PE=2 SV=1 Length = 191
Score = 206 bits (525), Expect = 9e-52 Identities = 102/148 (68%), Positives = 111/148 (75%) Frame = +2
Query: 245 GGVQPNPRGQQGNPAIDASSKQSTPMSNPVETHSVARRLQSELMALMTCGDPGVSAFPEG 424 G V P A+S + E SV RRLQSELMALM GDPGVSAFPEG Sbjct: 14 GNVPPPATAASTAAGTAAASGKQQARGAGAEGQSVVRRLQSELMALMMGGDPGVSAFPEG 73
Query: 425 DNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLD 604 DNIFSW+GTI GSA T Y+G SY+LSL FP EYP+K P V+F+TPCFHPNVD +GNICLD Sbjct: 74 DNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLD 133
Query: 605 ILQDKWSSAYDVRTILLSIQSLLGEPNN 688 ILQDKWSSAYDVRTILLSIQSLLGEPNN Sbjct: 134 ILQDKWSSAYDVRTILLSIQSLLGEPNN 161
>tr|B6TP88|B6TP88_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 206 bits (525), Expect = 9e-52 Identities = 104/148 (70%), Positives = 114/148 (77%), Gaps = 5/148 (3%) Frame = +2
Query: 260 NPRGQQGN-PAIDASSKQSTPMS----NPVETHSVARRLQSELMALMTCGDPGVSAFPEG 424 N Q GN PA A++ P S E SV RRLQSELMALM GDPGVSAFPEG Sbjct: 6 NQESQTGNVPAASAATPGPKPASAGAGKGAEGQSVVRRLQSELMALMMGGDPGVSAFPEG 65
Query: 425 DNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLD 604 DN+ W+GTI GSAGT Y+G SY+L+L F TEYP+K P V+FDTPCFHPNVD +GNICLD Sbjct: 66 DNMLHWVGTIDGSAGTAYEGTSYRLALAFTTEYPYKPPKVRFDTPCFHPNVDVHGNICLD 125
Query: 605 ILQDKWSSAYDVRTILLSIQSLLGEPNN 688 ILQDKWSSAYDVRTILLSIQSLLGEPNN Sbjct: 126 ILQDKWSSAYDVRTILLSIQSLLGEPNN 153
>tr|B6SR07|B6SR07_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 206 bits (525), Expect = 9e-52 Identities = 104/148 (70%), Positives = 114/148 (77%), Gaps = 5/148 (3%) Frame = +2
Query: 260 NPRGQQGN-PAIDASSKQSTPMS----NPVETHSVARRLQSELMALMTCGDPGVSAFPEG 424 N Q GN PA A++ P S E SV RRLQSELMALM GDPGVSAFPEG Sbjct: 6 NQESQTGNVPAASAATPGPKPASAGGGKGAEGQSVVRRLQSELMALMMGGDPGVSAFPEG 65
Query: 425 DNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLD 604 DN+ W+GTI GSAGT Y+G SY+L+L F TEYP+K P V+FDTPCFHPNVD +GNICLD Sbjct: 66 DNMLHWVGTIDGSAGTAYEGTSYRLALAFTTEYPYKPPKVRFDTPCFHPNVDVHGNICLD 125
Query: 605 ILQDKWSSAYDVRTILLSIQSLLGEPNN 688 ILQDKWSSAYDVRTILLSIQSLLGEPNN Sbjct: 126 ILQDKWSSAYDVRTILLSIQSLLGEPNN 153
>tr|A5BHQ5|A5BHQ5_VITVI Ubiquitin carrier protein OS=Vitis vinifera GN=GSVIVT00022226001 PE=3 SV=1 Length = 177
Score = 204 bits (518), Expect = 6e-51 Identities = 100/135 (74%), Positives = 111/135 (82%) Frame = +2
Query: 281 NPAIDASSKQSTPMSNPVETHSVARRLQSELMALMTCGDPGVSAFPEGDNIFSWIGTIKG 460 NPA+ A++KQ P + V+T SV +RLQSELMALM GD G+SAFPE DNIF W GTI G Sbjct: 14 NPAV-AATKQPLPPAKSVDTQSVLKRLQSELMALMMSGDGGISAFPEEDNIFCWKGTING 72
Query: 461 SAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLDILQDKWSSAYDV 640 S TV++G YKLSL FPT+YPFK P VKF+T CFHPNVD YGNICLDILQDKWSSAYDV Sbjct: 73 SKDTVFEGTEYKLSLSFPTDYPFKPPKVKFETGCFHPNVDVYGNICLDILQDKWSSAYDV 132
Query: 641 RTILLSIQSLLGEPN 685 RTILLSIQSLLGEPN Sbjct: 133 RTILLSIQSLLGEPN 147
>tr|A9PAG1|A9PAG1_POPTR Ubiquitin carrier protein OS=Populus trichocarpa PE=2 SV=1 Length = 179
Score = 203 bits (517), Expect = 7e-51 Identities = 98/134 (73%), Positives = 108/134 (80%) Frame = +2
Query: 284 PAIDASSKQSTPMSNPVETHSVARRLQSELMALMTCGDPGVSAFPEGDNIFSWIGTIKGS 463 PA SKQ+ P + V+T SV +RLQSELMALM G+ G+SAFPEGDNIF W GTI GS Sbjct: 13 PAGTTPSKQTVPSAKTVDTQSVLKRLQSELMALMMSGESGISAFPEGDNIFCWKGTITGS 72
Query: 464 AGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLDILQDKWSSAYDVR 643 TV++G YKLSL FP +YPFK P VKF+T CFHPNVD YGNICLDILQDKWSSAYDVR Sbjct: 73 KDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDVYGNICLDILQDKWSSAYDVR 132
Query: 644 TILLSIQSLLGEPN 685 TILLSIQSLLGEPN Sbjct: 133 TILLSIQSLLGEPN 146
>tr|B6TEH3|B6TEH3_MAIZE Ubiquitin-conjugating enzyme X OS=Zea mays PE=2 SV=1 Length = 183
Score = 203 bits (516), Expect = 1e-50 Identities = 102/148 (68%), Positives = 112/148 (75%), Gaps = 5/148 (3%) Frame = +2
Query: 260 NPRGQQGN-PAIDASSKQSTPM----SNPVETHSVARRLQSELMALMTCGDPGVSAFPEG 424 N Q GN PA A++ P E SV RRLQSELMALM GDPGVSAFPEG Sbjct: 6 NQESQTGNVPAASAAAPGPKPALAGGGKGAEGQSVVRRLQSELMALMMGGDPGVSAFPEG 65
Query: 425 DNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLD 604 DN+ W+GTI GSAGT Y+G SY+L+L F EYP+K P V+FDTPCFHPNVD +GNICLD Sbjct: 66 DNMLHWVGTIDGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDVHGNICLD 125
Query: 605 ILQDKWSSAYDVRTILLSIQSLLGEPNN 688 ILQDKWSSAYDVRTILLSIQSLLGEPNN Sbjct: 126 ILQDKWSSAYDVRTILLSIQSLLGEPNN 153
>tr|A9PD53|A9PD53_POPTR Ubiquitin carrier protein OS=Populus trichocarpa PE=2 SV=1 Length = 183
Score = 202 bits (515), Expect = 1e-50 Identities = 101/144 (70%), Positives = 112/144 (77%), Gaps = 5/144 (3%) Frame = +2
Query: 269 GQQGN-----PAIDASSKQSTPMSNPVETHSVARRLQSELMALMTCGDPGVSAFPEGDNI 433 G QGN PA +KQ+ + V+T SV +RLQSELMALM G+ G+SAFPEGDNI Sbjct: 6 GYQGNTPVAAPAGTTPAKQTVTAAKIVDTQSVLKRLQSELMALMMSGESGISAFPEGDNI 65
Query: 434 FSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLDILQ 613 F W GTIKGS TV++G YKLSL FP +YPFK P VKF+T CFHPNVD YGNICLDILQ Sbjct: 66 FCWKGTIKGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETSCFHPNVDIYGNICLDILQ 125
Query: 614 DKWSSAYDVRTILLSIQSLLGEPN 685 DKWSSAYDVRTILLSIQSLLGEPN Sbjct: 126 DKWSSAYDVRTILLSIQSLLGEPN 149
>tr|B4FCG1|B4FCG1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 183
Score = 201 bits (512), Expect = 3e-50 Identities = 102/148 (68%), Positives = 112/148 (75%), Gaps = 5/148 (3%) Frame = +2
Query: 260 NPRGQQGN-PAIDASSKQSTPMS----NPVETHSVARRLQSELMALMTCGDPGVSAFPEG 424 N Q GN A A++ P S E SV RRLQSELMALM GDPGVSAFPEG Sbjct: 6 NQESQTGNVSAASAAAPGPKPASAGAGKGAEGQSVVRRLQSELMALMMGGDPGVSAFPEG 65
Query: 425 DNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQYGNICLD 604 DN+ W+GTI GSAGT Y+G SY+L+L F EYP+K P V+FDTPCFHPNVD +GNICLD Sbjct: 66 DNMLHWVGTIAGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDVHGNICLD 125
Query: 605 ILQDKWSSAYDVRTILLSIQSLLGEPNN 688 ILQDKWSSAYDVRTILLSIQSLLGEPNN Sbjct: 126 ILQDKWSSAYDVRTILLSIQSLLGEPNN 153
>tr|A5AE59|A5AE59_VITVI Ubiquitin carrier protein OS=Vitis vinifera GN=GSVIVT00018215001 PE=3 SV=1 Length = 190
Score = 201 bits (512), Expect = 3e-50 Identities = 103/153 (67%), Positives = 118/153 (77%), Gaps = 8/153 (5%) Frame = +2
Query: 251 VQPNPRG-------QQGNPAIDASSKQSTPMSNPVETHSVARRLQSELMALMTCG-DPGV 406 V+PNP Q + A A SKQ NPV+T SV++RLQ ELMALM G D GV Sbjct: 3 VRPNPVDDNSSIPQQHQHHAHAAPSKQLKAAPNPVDTSSVSQRLQKELMALMMSGGDLGV 62
Query: 407 SAFPEGDNIFSWIGTIKGSAGTVYDGLSYKLSLRFPTEYPFKSPTVKFDTPCFHPNVDQY 586 SAFPE ++IF+WIGTI G GTVY+GLSYKLSLRFP +YPFK P VKF+T CFHPN+DQ+ Sbjct: 63 SAFPESESIFTWIGTIMGGNGTVYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNIDQF 122
Query: 587 GNICLDILQDKWSSAYDVRTILLSIQSLLGEPN 685 GNICLDILQDKWSSAYD +T+LLSIQSLLGEPN Sbjct: 123 GNICLDILQDKWSSAYDCKTVLLSIQSLLGEPN 155
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