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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951453
Clone id TST38A01NGRL0011_H06
Library
Length 662
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_H06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CCGGTGACGAGATTCGCCACTGCGTGCTTCAGCCTTCGACTACACAGCTTCTCCTGAAGC
CGTCGCGCAGGCCATTACTACGCCAGGATTTTGAGATTGAACTCTGAGGAGATGGAGAAG
GTGGAGCCATCCACTACTCCCTTTCAGCGAAAGGAAAAGTGGAAGCCTGTATATGCGTGG
CTTGAGACCCTGGACACGGGGTCAGTAGTTGGAACAAAAGTCATTGACGCATGGCTAGAA
AACAATCCATCATTGAAAGAAGATTTGCTTGGGCAGCATACTCGCCATCACTTGTTTCAT
TATATACAGAAATGTCATACCGGTTTAATAAAAAAGAAAATGAAGCAGGGGTTGAATACT
CCTAAGACAAATATCCAAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGTCCCACAAAGTA
CCCAAGCTAAGTGGCTCTGCTGCTGTTGGCGCGACAATGTTAAATAAACGGCTTCTCACC
AACTTGGGGCACAAGAGATCTATGTATGAAGGAAGAAATATGAACTCTATCACTACAGTG
AATGCAGACGTTAGCGAGTTCACAGGCAGTGAAACAAATTTTTTTGACAGGCCCCCTATC
ACATCGATGGACACAGCAGAAGCCAGAAAAAGATATGAAATCTTGTCTGAGTTGCAGCAG
CA
■■Homology search results ■■ -
sp_hit_id P50904
Definition sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus norvegicus
Align length 85
Score (bit) 32.7
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951453|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_H06, 5'
         (662 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus no...    33   1.8  
sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 OS=Bos tau...    33   1.8  
sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo sa...    32   3.9  
sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease prote...    32   3.9  
sp|O51632|Y689_BORBU Uncharacterized protein BB_0689 OS=Borrelia...    31   6.7  
sp|Q0ST91|GALT_CLOPS Galactose-1-phosphate uridylyltransferase O...    30   8.7  
sp|Q8XKP8|GALT_CLOPE Galactose-1-phosphate uridylyltransferase O...    30   8.7  
sp|Q0TQU4|GALT_CLOP1 Galactose-1-phosphate uridylyltransferase O...    30   8.7  
sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog ...    30   8.7  

>sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 OS=Rattus
            norvegicus GN=Rasa1 PE=2 SV=1
          Length = 1038

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
 Frame = -1

Query: 650  SDKISYLFLASAV---SIDVIGGLSKKFVS--LPVNSLTSAFTVVIEFIFLPSYIDLLCP 486
            S+ +  +F+AS +   ++  I G  +K V    P N+ T    VV  F+FL     L+CP
Sbjct: 844  SELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNN-TMRTRVVSGFVFLR----LICP 898

Query: 485  KLVRSRLFNIV----APTAAEPLSL 423
             ++  R+FNI+    +P AA  L+L
Sbjct: 899  AILNPRMFNIISDSPSPIAARTLTL 923


>sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 OS=Bos taurus
            GN=RASA1 PE=1 SV=1
          Length = 1044

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
 Frame = -1

Query: 650  SDKISYLFLASAV---SIDVIGGLSKKFVS--LPVNSLTSAFTVVIEFIFLPSYIDLLCP 486
            S+ +  +F+AS +   ++  I G  +K V    P N+ T    VV  F+FL     L+CP
Sbjct: 850  SELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNT-TMRTRVVSGFVFLR----LICP 904

Query: 485  KLVRSRLFNIV----APTAAEPLSL 423
             ++  R+FNI+    +P AA  L+L
Sbjct: 905  AILNPRMFNIISDSPSPIAARTLTL 929


>sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 OS=Homo sapiens
            GN=RASA1 PE=1 SV=1
          Length = 1047

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
 Frame = -1

Query: 650  SDKISYLFLASAV---SIDVIGGLSKKFVS--LPVNSLTSAFTVVIEFIFLPSYIDLLCP 486
            S+ +  +F+AS +   ++  I G  +K V    P N+ T    VV  F+FL     L+CP
Sbjct: 853  SELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNT-TMRTRVVSGFVFLR----LICP 907

Query: 485  KLVRSRLFNIV----APTAAEPLSL 423
             ++  R+FNI+    +P AA  L L
Sbjct: 908  AILNPRMFNIISDSPSPIAARTLIL 932


>sp|Q9CM47|MACB_PASMU Macrolide export ATP-binding/permease protein
           macB OS=Pasteurella multocida GN=macB PE=3 SV=1
          Length = 649

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 641 ISYLFLASAVSIDVIGGLSKKFVSLPVNSLTSAFT--VVIEFIFLPSYIDLLCPKLV 477
           I + FL  + S+ ++GG+    +SL +  L SAFT  + ++F F    I  +C  ++
Sbjct: 569 ILHQFLIESASVSLLGGMLGVLLSLLLGGLFSAFTDSIKMQFTFSSFLIAFVCSSMI 625


>sp|O51632|Y689_BORBU Uncharacterized protein BB_0689 OS=Borrelia
           burgdorferi GN=BB_0689 PE=4 SV=1
          Length = 155

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 133 TTPFQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPSLKEDLLGQHT 282
           TTP QR  K+   +     +    +   +V++AWL N+PS KE L+   T
Sbjct: 79  TTPMQRIHKYDQSFNLTREILASGIELNRVVNAWL-NSPSHKEALINTDT 127


>sp|Q0ST91|GALT_CLOPS Galactose-1-phosphate uridylyltransferase
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=galT PE=3 SV=1
          Length = 498

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 211 GTKVIDAWLENNPSLKEDLLGQHTRHHLFHYIQKCHTGLIK 333
           G  V+D  L NN + KE  LG    H   H+I+K + GLI+
Sbjct: 362 GKFVVDLSLRNNRTSKEHPLGIFHPHEEVHHIKKENIGLIE 402


>sp|Q8XKP8|GALT_CLOPE Galactose-1-phosphate uridylyltransferase
           OS=Clostridium perfringens GN=galT PE=3 SV=1
          Length = 498

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 211 GTKVIDAWLENNPSLKEDLLGQHTRHHLFHYIQKCHTGLIK 333
           G  V+D  L NN + KE  LG    H   H+I+K + GLI+
Sbjct: 362 GKFVVDLSLRNNRTSKEHPLGIFHPHEEVHHIKKENIGLIE 402


>sp|Q0TQU4|GALT_CLOP1 Galactose-1-phosphate uridylyltransferase
           OS=Clostridium perfringens (strain ATCC 13124 / NCTC
           8237 / Type A) GN=galT PE=3 SV=1
          Length = 498

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 211 GTKVIDAWLENNPSLKEDLLGQHTRHHLFHYIQKCHTGLIK 333
           G  V+D  L NN + KE  LG    H   H+I+K + GLI+
Sbjct: 362 GKFVVDLSLRNNRTSKEHPLGIFHPHEEVHHIKKENIGLIE 402


>sp|Q09654|ARD1_CAEEL Putative GTP-binding protein ard-1 homolog
           OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3
          Length = 539

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 600 DRGPVKKICFTACELANVCIHCSDRVHISSFI--HRSLVPQVGEKPFI*HCRANSS 439
           D   V  I  T C+ +N+C  CS+  H ++ +  HR  +P   + P + HCR +SS
Sbjct: 111 DSEHVAVIYCTVCD-SNLCERCSESTHSTNVLSKHRR-IPLTEKPPPLVHCRLHSS 164
tr_hit_id Q9FK31
Definition tr|Q9FK31|Q9FK31_ARATH Genomic DNA, chromosome 5, P1 clone:MXI22 (At5g50410) OS=Arabidopsis thaliana
Align length 85
Score (bit) 94.7
E-value 4.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951453|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_H06, 5'
         (662 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FK31|Q9FK31_ARATH Genomic DNA, chromosome 5, P1 clone:MXI22...    95   4e-18
tr|A7PHH3|A7PHH3_VITVI Chromosome chr17 scaffold_16, whole genom...    87   9e-16
tr|Q6ZJ65|Q6ZJ65_ORYSJ Putative uncharacterized protein OJ1789_C...    82   2e-14
tr|Q0J469|Q0J469_ORYSJ Os08g0531200 protein OS=Oryza sativa subs...    82   2e-14
tr|A3BV59|A3BV59_ORYSJ Putative uncharacterized protein OS=Oryza...    77   7e-13
tr|B3L5T1|B3L5T1_PLAKH Protein kinase, putative OS=Plasmodium kn...    34   9.2  
tr|A5K5D4|A5K5D4_PLAVI Protein kinase domain containing protein ...    34   9.2  
tr|A8TF43|A8TF43_METVO Archaeosine tRNA-ribosyltransferase OS=Me...    34   9.2  

>tr|Q9FK31|Q9FK31_ARATH Genomic DNA, chromosome 5, P1 clone:MXI22
           (At5g50410) OS=Arabidopsis thaliana GN=At5g50410 PE=2
           SV=1
          Length = 259

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 38/85 (44%), Positives = 60/85 (70%)
 Frame = +1

Query: 100 NSEEMEKVEPSTTPFQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPSLKEDLLGQH 279
           N + +E  +     FQR ++W PVY+WLE+LD G +V +K I  WL+ NP +K++L  +H
Sbjct: 104 NEQNVEADQQHPARFQRTDQWLPVYSWLESLDNGELVKSKDISEWLDANPEVKQELSSRH 163

Query: 280 TRHHLFHYIQKCHTGLIKKKMKQGL 354
           +R+HL HY++KCH  ++K+K K+GL
Sbjct: 164 SRYHLTHYVKKCHLKILKRKEKKGL 188


>tr|A7PHH3|A7PHH3_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017941001
           PE=4 SV=1
          Length = 226

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
 Frame = +1

Query: 97  LNSEEMEKVEPSTTP------FQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPSLK 258
           L    M   E  T P      FQR ++W PVYAWLE LD   VV +K I  WL  NP+++
Sbjct: 68  LTQNSMPTQEKDTNPGDNPARFQRTDQWIPVYAWLELLDKDEVVKSKDISDWLTENPTVR 127

Query: 259 EDLLGQHTRHHLFHYIQKCHTGLIKKKMKQ 348
           E L  +H+R+HL HYI+KCH  ++K++ K+
Sbjct: 128 EQLCSRHSRYHLMHYIKKCHLKILKRREKK 157


>tr|Q6ZJ65|Q6ZJ65_ORYSJ Putative uncharacterized protein
           OJ1789_C07.22 OS=Oryza sativa subsp. japonica
           GN=OJ1789_C07.22 PE=4 SV=1
          Length = 888

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = +1

Query: 79  YARILRLNSEEMEKVEPSTTP--FQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPS 252
           + R+L L  +++   + S  P  FQR + WKPVY WLE+L+  S+V +K I  WL +NP 
Sbjct: 119 HQRLLALRGDQVLDADQSAFPYRFQRTDLWKPVYKWLESLELESLVTSKEISEWLTSNPQ 178

Query: 253 LKEDLLGQHTRHHLFHYIQKCHTGLIKKKMK 345
           + + L+ +H+++HL HY Q+ H  L+KK+ K
Sbjct: 179 IMDRLVEKHSKYHLIHYTQRMHLKLLKKRGK 209


>tr|Q0J469|Q0J469_ORYSJ Os08g0531200 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0531200 PE=4 SV=1
          Length = 892

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = +1

Query: 79  YARILRLNSEEMEKVEPSTTP--FQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPS 252
           + R+L L  +++   + S  P  FQR + WKPVY WLE+L+  S+V +K I  WL +NP 
Sbjct: 119 HQRLLALRGDQVLDADQSAFPYRFQRTDLWKPVYKWLESLELESLVTSKEISEWLTSNPQ 178

Query: 253 LKEDLLGQHTRHHLFHYIQKCHTGLIKKKMK 345
           + + L+ +H+++HL HY Q+ H  L+KK+ K
Sbjct: 179 IMDRLVEKHSKYHLIHYTQRMHLKLLKKRGK 209


>tr|A3BV59|A3BV59_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026931 PE=4 SV=1
          Length = 882

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 32/68 (47%), Positives = 48/68 (70%)
 Frame = +1

Query: 142 FQRKEKWKPVYAWLETLDTGSVVGTKVIDAWLENNPSLKEDLLGQHTRHHLFHYIQKCHT 321
           FQR + WKPVY WLE+L+  S+V +K I  WL +NP + + L+ +H+++HL HY Q+ H 
Sbjct: 172 FQRTDLWKPVYKWLESLELESLVTSKEISEWLTSNPQIMDRLVEKHSKYHLIHYTQRMHL 231

Query: 322 GLIKKKMK 345
            L+KK+ K
Sbjct: 232 KLLKKRGK 239


>tr|B3L5T1|B3L5T1_PLAKH Protein kinase, putative OS=Plasmodium
            knowlesi (strain H) GN=PKH_094520 PE=4 SV=1
          Length = 1407

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 295  FHYIQKCHTGLIKKKMKQGLNTPKTNIQ 378
            F+Y++KC   L+  KMK+GL+ PK N Q
Sbjct: 1342 FNYLEKCSKELLVNKMKKGLSYPKINQQ 1369


>tr|A5K5D4|A5K5D4_PLAVI Protein kinase domain containing protein
            OS=Plasmodium vivax GN=PVX_092985 PE=4 SV=1
          Length = 1397

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 295  FHYIQKCHTGLIKKKMKQGLNTPKTNIQ 378
            F+Y++KC   L+  KMK+GL+ PK N Q
Sbjct: 1332 FNYLEKCSKELLVNKMKRGLSYPKINQQ 1359


>tr|A8TF43|A8TF43_METVO Archaeosine tRNA-ribosyltransferase
           OS=Methanococcus voltae A3 GN=MvolDRAFT_0616 PE=4 SV=1
          Length = 675

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -1

Query: 275 CPSKSSFNDGLFSSHASMTFVPTTDPVSRVSSHAYTGFHFSFR 147
           C +     DGL      M FV   DPVS+ S   YTGF   FR
Sbjct: 344 CRAHPKLMDGLRRVSKYMEFVEKNDPVSKKSGFFYTGFESMFR 386