DK951466
Clone id TST38A01NGRL0011_H20
Library
Length 651
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_H20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GTACGCTACTACCCCTTCTCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCGTTCAC
TCTCTCACCCACGCGCACACAGGATTTGGCATTAGAGGAGCAGAGTGAATGCGCCAAATG
GAGAAGTCCAATTGTCTGCTTCTGCTGGTTAGCTTTCTTATACCACTAAAGAATCAAGCT
CTGCTAATCCCTGCGTGTGCAGCGATACGGATTAAAGGGAGAGAAGCCCTAGACATGGCG
CCGCCCACATATTCCCCAAATCAAGCACCCACATCGCCCGCAGATAATACAGGCGCCGCC
GATCAATCTGACGCCCAAGAAACTCTGATCAGACGGGGCTATCGAAACATCACCATTGTG
TATGTCGCAAGGATAGTCGTCTGCTTGTCCATTTTTGCCCTCACCTACAACATCGCCTAC
AAGACCATCTTTCTGAGGAGCGCTGCAGCAACCAATCCCAGGCGGGTTCGCGACGCGGAG
CTTCTAGAGAACGACAGCAGCGGTGAACGAAGTGGCGGGACCGATGCATTGCGCATTGCG
AGCCTGCAGGTTCTGAGATATGCAGGCTCTTTTCGGAAGGTCGCCATTAAAGATGCAGGT
AGCTCTAACGGCGATGGCGCTGATGAAGAGGGCGATCGACAGCCTTCTAAT
■■Homology search results ■■ -
sp_hit_id A4XTR1
Definition sp|A4XTR1|PQQB_PSEMY Coenzyme PQQ synthesis protein B OS=Pseudomonas mendocina (strain ymp)
Align length 46
Score (bit) 33.9
E-value 0.77
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951466|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_H20, 5'
(651 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4XTR1|PQQB_PSEMY Coenzyme PQQ synthesis protein B OS=Pseudom... 34 0.77
sp|P53783|SOX1_MOUSE SOX-1 protein OS=Mus musculus GN=Sox1 PE=2 ... 33 0.99
sp|Q12412|PNS1_YEAST Protein PNS1 OS=Saccharomyces cerevisiae GN... 32 2.9
sp|O00570|SOX1_HUMAN SOX-1 protein OS=Homo sapiens GN=SOX1 PE=2 ... 32 3.8
sp|Q9F9U0|PQQB_PSEST Coenzyme PQQ synthesis protein B OS=Pseudom... 32 3.8
sp|Q1KKZ4|HXAAB_FUGRU Homeobox protein Hox-A10b OS=Fugu rubripes... 31 4.9
sp|P26414|GUNA_MICBI Endoglucanase A OS=Microbispora bispora GN=... 31 5.0
sp|Q7MBT9|PDXH_VIBVY Pyridoxine/pyridoxamine 5'-phosphate oxidas... 30 8.4
sp|Q8D510|PDXH_VIBVU Pyridoxine/pyridoxamine 5'-phosphate oxidas... 30 8.4
sp|Q87FE9|PDXH_VIBPA Pyridoxine/pyridoxamine 5'-phosphate oxidas... 30 8.4
sp|Q9KKM4|PDXH_VIBCH Pyridoxine/pyridoxamine 5'-phosphate oxidas... 30 8.4
sp|A5F176|PDXH_VIBC3 Pyridoxine/pyridoxamine 5'-phosphate oxidas... 30 8.4

>sp|A4XTR1|PQQB_PSEMY Coenzyme PQQ synthesis protein B
OS=Pseudomonas mendocina (strain ymp) GN=pqqB PE=3 SV=1
Length = 304

Score = 33.9 bits (76), Expect = 0.77
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1

Query: 157 LIPLKNQALLIPACAAIRIKGREALDMAPPTYSPNQAPTSPADNTG 294
LI L + IPAC +RI AL + P YSP++ P DN G
Sbjct: 139 LIELDAKPFSIPACPGLRINAI-ALRSSAPPYSPHRGNPHPGDNIG 183


>sp|P53783|SOX1_MOUSE SOX-1 protein OS=Mus musculus GN=Sox1 PE=2
SV=1
Length = 391

Score = 33.5 bits (75), Expect = 0.99
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2

Query: 239 RRPHI-PQIKHPHRPQIIQAPPINLTPKKL*SDGAIETSPLCMSQG*SSACP 391
R PH P HPH P A P N P GA++ SP+ SQG SA P
Sbjct: 222 RHPHAHPAHPHPHHPH---AHPHNPQPMHRYDMGALQYSPISNSQGYMSASP 270


>sp|Q12412|PNS1_YEAST Protein PNS1 OS=Saccharomyces cerevisiae
GN=PNS1 PE=1 SV=1
Length = 539

Score = 32.0 bits (71), Expect = 2.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1

Query: 241 PPTYSPNQAPTSPADNTGAADQSDAQ 318
PP Y PN P S ++N+ AA+ +D Q
Sbjct: 14 PPAYDPNHRPPSSSENSAAANVNDGQ 39


>sp|O00570|SOX1_HUMAN SOX-1 protein OS=Homo sapiens GN=SOX1 PE=2
SV=2
Length = 391

Score = 31.6 bits (70), Expect = 3.8
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2

Query: 245 PHI-PQIKHPHRPQIIQAPPINLTPKKL*SDGAIETSPLCMSQG*SSACP 391
PH P HPH P A P N P GA++ SP+ SQG SA P
Sbjct: 224 PHAHPAHPHPHHPH---AHPHNPQPMHRYDMGALQYSPISNSQGYMSASP 270


>sp|Q9F9U0|PQQB_PSEST Coenzyme PQQ synthesis protein B
OS=Pseudomonas stutzeri GN=pqqB PE=3 SV=1
Length = 304

Score = 31.6 bits (70), Expect = 3.8
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1

Query: 157 LIPLKNQALLIPACAAIRIKGREALDMAPPTYSPNQAPTSPADNTG 294
LI L + IPAC + I AL + P YSP++ P DN G
Sbjct: 139 LIELDAKPFTIPACPGLSITAI-ALRSSAPPYSPHRGNPHPGDNIG 183


>sp|Q1KKZ4|HXAAB_FUGRU Homeobox protein Hox-A10b OS=Fugu rubripes
GN=hoxa10b PE=3 SV=1
Length = 331

Score = 31.2 bits (69), Expect = 4.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3

Query: 402 HLQHRLQDHLSEERCSN-QSQAGSRRGASRERQQR*TKWRDRCIAHCEPAGSEICRLFSE 578
H H DH + ++ + S++ R+ AS E +QR + A C P E RL SE
Sbjct: 160 HDAHPNTDHFTLQQSARPDSRSSHRQAASAEPEQRANREESPVCAPCVPVREEDSRLSSE 219

Query: 579 G 581
G
Sbjct: 220 G 220


>sp|P26414|GUNA_MICBI Endoglucanase A OS=Microbispora bispora
GN=celA PE=3 SV=1
Length = 456

Score = 31.2 bits (69), Expect = 5.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1

Query: 226 ALDMAPPTYSPNQAPTSPADNTGAAD 303
A++ APPTYSP+ P++P+ + +D
Sbjct: 318 AMNAAPPTYSPSPTPSTPSPSPSQSD 343


>sp|Q7MBT9|PDXH_VIBVY Pyridoxine/pyridoxamine 5'-phosphate oxidase
OS=Vibrio vulnificus (strain YJ016) GN=pdxH PE=3 SV=2
Length = 211

Score = 30.4 bits (67), Expect = 8.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3

Query: 625 HQRHRR*SYLHL*WRPSEKSLHISEPAGSQCAMHRSRHFVHR 500
H H LH W P E+ +HI+ A AM ++F R
Sbjct: 85 HLEHNSKISLHFPWHPLERQVHITGVAEKLTAMENMKYFTSR 126


>sp|Q8D510|PDXH_VIBVU Pyridoxine/pyridoxamine 5'-phosphate oxidase
OS=Vibrio vulnificus GN=pdxH PE=3 SV=1
Length = 211

Score = 30.4 bits (67), Expect = 8.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3

Query: 625 HQRHRR*SYLHL*WRPSEKSLHISEPAGSQCAMHRSRHFVHR 500
H H LH W P E+ +HI+ A AM ++F R
Sbjct: 85 HLEHNSKISLHFPWHPLERQVHITGVAEKLTAMENMKYFTSR 126


>sp|Q87FE9|PDXH_VIBPA Pyridoxine/pyridoxamine 5'-phosphate oxidase
OS=Vibrio parahaemolyticus GN=pdxH PE=3 SV=1
Length = 211

Score = 30.4 bits (67), Expect = 8.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3

Query: 625 HQRHRR*SYLHL*WRPSEKSLHISEPAGSQCAMHRSRHFVHR 500
H H LH W P E+ +HI+ A AM ++F R
Sbjct: 85 HLEHNSNISLHFPWHPLERQVHITGVAEKLTAMENMKYFTSR 126


tr_hit_id B1Z8K7
Definition tr|B1Z8K7|B1Z8K7_METPB Putative uncharacterized protein OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
Align length 30
Score (bit) 37.4
E-value 0.81
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951466|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_H20, 5'
(651 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1Z8K7|B1Z8K7_METPB Putative uncharacterized protein OS=Methy... 37 0.81
tr|Q6K7P7|Q6K7P7_ORYSJ Os02g0828300 protein OS=Oryza sativa subs... 37 1.0
tr|B2VVW0|B2VVW0_PYRTR Predicted protein OS=Pyrenophora tritici-... 36 1.8
tr|Q8LN93|Q8LN93_ORYSJ Os10g0507500 protein OS=Oryza sativa subs... 35 4.0
tr|A9UVU5|A9UVU5_MONBE Predicted protein OS=Monosiga brevicollis... 35 5.2
tr|A9BWS9|A9BWS9_DELAS Putative uncharacterized protein OS=Delft... 34 6.8
tr|A3C6B7|A3C6B7_ORYSJ Putative uncharacterized protein OS=Oryza... 34 8.9

>tr|B1Z8K7|B1Z8K7_METPB Putative uncharacterized protein
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=Mpop_3748 PE=4 SV=1
Length = 432

Score = 37.4 bits (85), Expect = 0.81
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 196 CAAIRIKGREALDMAPPTYSPNQAPTSPAD 285
CAA+ + RE D+ PPT +P AP +PAD
Sbjct: 184 CAAVEARTREEADVQPPTEAPRGAPVAPAD 213


>tr|Q6K7P7|Q6K7P7_ORYSJ Os02g0828300 protein OS=Oryza sativa subsp.
japonica GN=P0452F04.38 PE=4 SV=1
Length = 205

Score = 37.0 bits (84), Expect = 1.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3

Query: 441 RCSNQSQAGSRRGASRERQQR*TKWRDRCIAHCEPAGSEICRLF 572
RCS + AG RR R + WR RC+ HC G+ + L+
Sbjct: 69 RCSRRLLAGERRWLLLRRYRSRRIWRSRCLGHCNAGGNMLWNLY 112


>tr|B2VVW0|B2VVW0_PYRTR Predicted protein OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=PTRG_01322 PE=4
SV=1
Length = 349

Score = 36.2 bits (82), Expect = 1.8
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +1

Query: 241 PPTYSPNQAP-TSPADNTGAADQSDAQETLIRRG------YRNITIVYVARIVVCLSIFA 399
P T + Q+P T AD G AD + + I R YR ++V I C++I
Sbjct: 243 PTTSAGVQSPQTEHADKRGNADVNAKKAVKILRSIIHGRSYRRKVFLFVYIIWCCVAIAI 302

Query: 400 LTYNIAYKTIFLRSAAATNPRRVRDAELLENDSSGERSG 516
L + T++LR + + RD E+ + GE G
Sbjct: 303 LLSIVVAATMYLRRWSRARAEKRRDLEMENREGQGEMEG 341


>tr|Q8LN93|Q8LN93_ORYSJ Os10g0507500 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0015K05.14 PE=4 SV=1
Length = 248

Score = 35.0 bits (79), Expect = 4.0
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1

Query: 208 RIKGREALDMAP-----PTYSPNQAPTSPADNTGAADQSD 312
R +G ++ D AP PTY+ Q P PAD + AAD SD
Sbjct: 58 RNRGLQSADAAPLPPRPPTYAAEQCPADPADPSPAADDSD 97


>tr|A9UVU5|A9UVU5_MONBE Predicted protein OS=Monosiga brevicollis
GN=36529 PE=4 SV=1
Length = 760

Score = 34.7 bits (78), Expect = 5.2
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -1

Query: 627 FISAIAVRATCIFNGDLPKRACISQNLQARNAQCIGPATSFTAAVVL*KLRV----ANPP 460
F + V FN P + + LQARNA P FTA L L + PP
Sbjct: 100 FADTLPVIVARWFNDFFPLARTLGRELQARNASAFSPQLKFTAQSWLVWLYINCEAVQPP 159

Query: 459 GIGCCSA 439
GI C +A
Sbjct: 160 GIACPNA 166


>tr|A9BWS9|A9BWS9_DELAS Putative uncharacterized protein OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=Daci_3975 PE=4
SV=1
Length = 239

Score = 34.3 bits (77), Expect = 6.8
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1

Query: 163 PLKNQALLIPACAAIRIKGREALDMAPPTYS---PNQAPTSPADNTGAADQSDAQETLIR 333
P++ AL+ A++R REALD+ P S PNQ PT P TG A + A+
Sbjct: 140 PVETAALV----ASLRAFIREALDLEPIPDSLRVPNQGPTRPGGTTGGARKGGAESGASS 195

Query: 334 RG 339
+G
Sbjct: 196 KG 197


>tr|A3C6B7|A3C6B7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_030839 PE=4 SV=1
Length = 248

Score = 33.9 bits (76), Expect = 8.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1

Query: 241 PPTYSPNQAPTSPADNTGAADQSD 312
PPTY+ Q P PAD + AAD SD
Sbjct: 74 PPTYAAEQCPADPADPSPAADDSD 97