NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951504
Clone id TST38A01NGRL0011_J10
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_J10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTTTTGGCGTTCGCTTTCGCCGCCACTGCTGCTTGTCGGCTTTGCCGCATTGAGATGAC
GCTGTTTCCGTCTCTTAAACCTCCGACTCTAGAGCATCAAACCCAGTGGACCGCACCCTC
CTGCGAAGAAGCCTTGCTGGCGCAAGAAGAAGCAGAGCTCGAAGAAAAGTATAACGAGAT
ACGAATAGCTAATGCTACTTTGATGCCAATTGGAAAGATCAATGCTGATAATGATCAAGA
TGACTTTGAACCTGATGGAGAGGAGGACGATGCAGATAATGTAGAGGAAGAAAGTGAAGG
TGAAGATTTTGATCAAGAAACAGGGTAGGAAATAACATAAACATTCCAAGGACCTGAAAT
GCCTTAAAATCTGTAGCTATTTGTGGCGACTTGTCCTCTAGGAAAGTCGTATGGGCTGGT
GAATCTGTCAGAGGGCCTGAATTTGTTGGCAGTGCCAGTGACAAGAAATAATAGTGAATT
GTATGAATGCCAGTAGTATGGGTATTTCTGTATGTAGTCTCCAGCAAAGAACCTATGTAA
GGTTACAAGAGTCAGTTTTGTTGTGCTGTGTATGCTGACTATCATAAAACTTAAGC
■■Homology search results ■■ -
sp_hit_id Q9TLU4
Definition sp|Q9TLU4|RK5_CYACA 50S ribosomal protein L5, chloroplastic OS=Cyanidium caldarium
Align length 67
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951504|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_J10, 5'
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TLU4|RK5_CYACA 50S ribosomal protein L5, chloroplastic OS=C...    33   1.1  
sp|Q8BHE1|GEMI8_MOUSE Gem-associated protein 8 OS=Mus musculus G...    33   1.1  
sp|P29443|XYLA_LACBR Xylose isomerase OS=Lactobacillus brevis GN...    30   7.1  
sp|Q03TX3|XYLA_LACBA Xylose isomerase OS=Lactobacillus brevis (s...    30   7.1  
sp|P40471|AYR1_YEAST NADPH-dependent 1-acyldihydroxyacetone phos...    30   9.2  

>sp|Q9TLU4|RK5_CYACA 50S ribosomal protein L5, chloroplastic
           OS=Cyanidium caldarium GN=rpl5 PE=3 SV=1
          Length = 182

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 588 FMIVSIHSTTKLTLVTLHRFFAGDYIQKYPYYWHSYNSLLFLVTGTANKFRPSDRFTSPY 409
           F   ++H   KLT +TL+R   G   Q+ P  + S  S L L+TG   +F  S +  + +
Sbjct: 22  FEYTNVHQIPKLTKITLNRGL-GTLYQQSPKVFESSVSDLMLITGQKPRFNKSKKSIAGF 80

Query: 408 DFPRGQV 388
               G V
Sbjct: 81  KLREGTV 87


>sp|Q8BHE1|GEMI8_MOUSE Gem-associated protein 8 OS=Mus musculus
           GN=Gemin8 PE=1 SV=1
          Length = 238

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 504 YPYYWHSYNSLLFLVTGTANKFRP--SDRFTSPYDFPRGQVATNSYRF*GISGPWN 343
           Y  YW  Y+  +  + G  N +R      FTSP+ FP G +  NS  +     PW+
Sbjct: 17  YARYWQHYHHAMLWMQGHQNAYRKFRDSYFTSPWLFPHGALPWNSPAY-EAGHPWD 71


>sp|P29443|XYLA_LACBR Xylose isomerase OS=Lactobacillus brevis
           GN=xylA PE=3 SV=1
          Length = 449

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 519 DYIQKYPYYWHSYNSLLFLVTGTANKFRPSDRFTSPYDFPRGQV 388
           D+++    YWH+++  L    G     RP D++T P D    +V
Sbjct: 42  DWLRFAVAYWHTFDQRLVDPFGDGTAQRPYDKYTDPMDLALAKV 85


>sp|Q03TX3|XYLA_LACBA Xylose isomerase OS=Lactobacillus brevis
           (strain ATCC 367 / JCM 1170) GN=xylA PE=3 SV=1
          Length = 449

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 519 DYIQKYPYYWHSYNSLLFLVTGTANKFRPSDRFTSPYDFPRGQV 388
           D+++    YWH+++  L    G     RP D++T P D    +V
Sbjct: 42  DWLRFAVAYWHTFDQRLVDPFGDGTAQRPYDKYTDPMDLALAKV 85


>sp|P40471|AYR1_YEAST NADPH-dependent 1-acyldihydroxyacetone
           phosphate reductase OS=Saccharomyces cerevisiae GN=AYR1
           PE=1 SV=1
          Length = 297

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 594 LSFMIVSIHSTTKLTLVTLHRFFAGDYIQKYPYYWHSYNSLLFLVTGTANKFRPSDRFTS 415
           +SF   SI+S +K     +H++  G +++  P+     N++   V       RP    TS
Sbjct: 149 VSFPFGSIYSASK---AAIHQYARGLHLEMKPFNVRVINAITGGVATDIADKRPLPE-TS 204

Query: 414 PYDFPRGQVATNS 376
            Y+FP G+ A NS
Sbjct: 205 IYNFPEGREAFNS 217
tr_hit_id A7PCS6
Definition tr|A7PCS6|A7PCS6_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 74
Score (bit) 37.7
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951504|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_J10, 5'
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PCS6|A7PCS6_VITVI Chromosome chr17 scaffold_12, whole genom...    38   0.50 
tr|A9P1N0|A9P1N0_PICSI Putative uncharacterized protein OS=Picea...    37   0.86 
tr|A5AXE3|A5AXE3_VITVI Putative uncharacterized protein OS=Vitis...    34   5.6  
tr|Q5AV07|Q5AV07_EMENI Putative uncharacterized protein OS=Emeri...    33   9.5  

>tr|A7PCS6|A7PCS6_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015992001
           PE=4 SV=1
          Length = 92

 Score = 37.7 bits (86), Expect = 0.50
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 56  MTLFP---SLKPPTLEHQTQWTAPSCXXXXXXXXXXXXXXKYNEIRIANATLMPIGKINA 226
           MT +P   +  P +    +QW  P                K NEI   N+ L+ IGK  A
Sbjct: 1   MTQYPWSTNTIPTSFLLPSQWPHPHSDELLLAMEESDFDDKCNEITKINSNLVVIGKPAA 60

Query: 227 DNDQDDFEPDGEED 268
           DND++D + D ++D
Sbjct: 61  DNDKEDLDNDADDD 74


>tr|A9P1N0|A9P1N0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 98

 Score = 37.0 bits (84), Expect = 0.86
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 167 KYNEIRIANATLMPIGKINADNDQDDFEPDGEED 268
           K+ EIR AN+ L  +G+ N DNDQ+D E + E++
Sbjct: 47  KWAEIRNANSNLPVLGRTNVDNDQEDVEGEPEDE 80


>tr|A5AXE3|A5AXE3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019813 PE=4 SV=1
          Length = 286

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 173 NEIRIANATLMPIGKINADNDQDDFEPDGEED 268
           NEI   N+ L+ IGK  ADND++D + D ++D
Sbjct: 237 NEITKINSNLVVIGKPAADNDKEDLDNDADDD 268


>tr|Q5AV07|Q5AV07_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN7873.2 PE=4 SV=1
          Length = 2111

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 419 PAHTTFLEDKSPQIATDFKAFQVLGMFMLFPTLFLD 312
           P HT+ LED   QI  D ++  V G  +LFP L  D
Sbjct: 464 PFHTSLLEDAEAQILEDLRSVHVPGNSLLFPVLRTD 499