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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951515
Clone id TST38A01NGRL0011_J21
Library
Length 400
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_J21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGAAGAACCACACCGCCCACAATCAGTCTTACAAAGCGCACAAGAATGGAATCAAGAAGG
CCAAGAAGCACAAGTACACTTCAAGGAAGGGGATGGACCCTAAGTTTCTACGGAATCAGA
GATACGCAAAGAAACACAATCGAGTTGGTGGTGCTGATGCAGGATCCGACTCCTGTGCTG
AAGAGTAAATTGGAGTAGTTACCCGGCATATATGTGGCTCTTGTAATGAGCAGAGAGATG
GCTGCCAAGCCTCTCTACCTCCCAATGTCGCTCTGACTGGGGACCTTTTTGATAATTCTT
AATTTGCATCGTGTTTAAACAAAATTTTTTCCACCACAAAAGTGTTATCTCAGGCCTTAT
CAAGGTTTAGCTGTTGTTGAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q84WM0
Definition sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis thaliana
Align length 54
Score (bit) 60.5
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951515|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_J21, 5'
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis...    60   3e-09
sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis...    60   4e-09
sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicu...    55   8e-08
sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RP...    55   8e-08
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus G...    55   8e-08
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicu...    55   8e-08
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens G...    55   8e-08
sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=...    55   8e-08
sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces ...    40   0.003
sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila mel...    40   0.003
sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 OS=Schizosaccharo...    34   0.26 
sp|Q54TW3|RL29_DICDI 60S ribosomal protein L29 OS=Dictyostelium ...    31   1.7  
sp|Q6GEN2|NPD_STAAR NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|P66816|NPD_STAAN NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|P66815|NPD_STAAM NAD-dependent deacetylase OS=Staphylococcus ...    31   2.2  
sp|Q8NVC8|NPD_STAAW NAD-dependent deacetylase OS=Staphylococcus ...    30   2.8  
sp|Q6G7B7|NPD_STAAS NAD-dependent deacetylase OS=Staphylococcus ...    30   2.8  
sp|P33191|TUB8_SOLTU Induced stolen tip protein TUB8 (Fragment) ...    30   4.8  
sp|Q7SZC5|NDC1_DANRE Nucleoporin NDC1 OS=Danio rerio GN=tmem48 P...    30   4.8  
sp|Q5HE07|NPD_STAAC NAD-dependent deacetylase OS=Staphylococcus ...    30   4.8  
sp|Q53700|NPD_STAA8 NAD-dependent deacetylase OS=Staphylococcus ...    30   4.8  
sp|Q6NHF7|PPNK_CORDI Probable inorganic polyphosphate/ATP-NAD ki...    29   6.3  
sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus mus...    29   6.3  
sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sa...    29   6.3  
sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos tau...    29   6.3  
sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN ...    29   6.3  

>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis
           thaliana GN=RPL29B PE=2 SV=2
          Length = 61

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 29/54 (53%), Positives = 33/54 (61%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAG 164
           KNHTAHNQS               +T  +GMDPKFLRNQRYA+KHN   G +AG
Sbjct: 5   KNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAG 58


>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis
           thaliana GN=RPL29A PE=2 SV=1
          Length = 61

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 31/61 (50%), Positives = 36/61 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSDSCAE 182
           KNHTAHNQS               +T  +GMDPKFLRNQRYA+KHN      AG ++ AE
Sbjct: 5   KNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN----VKAGENASAE 60

Query: 183 E 185
           E
Sbjct: 61  E 61


>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus
           GN=Rpl29 PE=1 SV=3
          Length = 156

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RPL29
           PE=2 SV=4
          Length = 160

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus
           GN=Rpl29 PE=2 SV=2
          Length = 160

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca
           fascicularis GN=RPL29 PE=2 SV=3
          Length = 157

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens
           GN=RPL29 PE=1 SV=2
          Length = 159

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus
           GN=RPL29 PE=2 SV=3
          Length = 152

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVG 149
           KNHT HNQS               Y S KG+DPKFLRN R+AKKHN+ G
Sbjct: 5   KNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53


>sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces
           cerevisiae GN=RPL29 PE=1 SV=3
          Length = 59

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYA 128
           KNHTAHNQ+               Y S KG+DPKF RN ++A
Sbjct: 5   KNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46


>sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila
           melanogaster GN=RpL29 PE=1 SV=1
          Length = 76

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHN 140
           KNHT HNQ+               + S  GMD KFL NQRYA+K N
Sbjct: 5   KNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50
tr_hit_id A9S9C3
Definition tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 52
Score (bit) 73.6
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951515|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_J21, 5'
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella paten...    74   5e-12
tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea...    73   6e-12
tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella paten...    71   2e-11
tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella paten...    71   3e-11
tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromos...    64   3e-09
tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Popul...    64   5e-09
tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromos...    64   5e-09
tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subs...    63   8e-09
tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza...    63   8e-09
tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng GN...    62   2e-08
tr|A9P870|A9P870_POPTR Putative uncharacterized protein OS=Popul...    62   2e-08
tr|Q9FR31|Q9FR31_SOLLC Ripening regulated protein DDTFR19 OS=Sol...    61   2e-08
tr|Q0WTD2|Q0WTD2_ARATH Putative ribosomal protein L29 OS=Arabido...    59   1e-07
tr|A8IX67|A8IX67_CHLRE Ribosomal protein L29 OS=Chlamydomonas re...    58   3e-07
tr|B6T5X5|B6T5X5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    56   8e-07
tr|Q7SZA5|Q7SZA5_XENLA MGC64312 protein OS=Xenopus laevis PE=4 SV=1    55   1e-06
tr|Q6DGL4|Q6DGL4_DANRE Zgc:92868 OS=Danio rerio GN=zgc:92868 PE=...    55   1e-06
tr|A9ZTA8|A9ZTA8_SOLSE Ribosomal protein L29 OS=Solea senegalens...    55   1e-06
tr|A9UMU7|A9UMU7_XENTR LOC100135409 protein OS=Xenopus tropicali...    55   1e-06
tr|Q5M8M8|Q5M8M8_MOUSE Putative uncharacterized protein OS=Mus m...    55   1e-06
tr|B6U0G5|B6U0G5_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   1e-06
tr|Q6IPI1|Q6IPI1_HUMAN Ribosomal protein L29 OS=Homo sapiens GN=...    55   1e-06
tr|Q5T1D1|Q5T1D1_HUMAN Ribosomal protein L29 (RPL29) pseudogene ...    55   1e-06
tr|Q90YT8|Q90YT8_ICTPU Ribosomal protein L29 OS=Ictalurus puncta...    55   2e-06
tr|B6TL28|B6TL28_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   2e-06
tr|Q66KW1|Q66KW1_XENLA MGC85384 protein OS=Xenopus laevis GN=MGC...    55   2e-06
tr|B6UC87|B6UC87_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   2e-06
tr|B6SYX2|B6SYX2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   2e-06
tr|B6SPH4|B6SPH4_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   2e-06
tr|B6SKT2|B6SKT2_MAIZE 60S ribosomal protein L29 OS=Zea mays PE=...    55   2e-06

>tr|A9S9C3|A9S9C3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109840 PE=4 SV=1
          Length = 63

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 35/52 (67%), Positives = 35/52 (67%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 158
           KNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHNR G AD
Sbjct: 5   KNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAAD 56


>tr|A9NK14|A9NK14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 65

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 34/57 (59%), Positives = 39/57 (68%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSDS 173
           KNHTAHNQSY              +TSRKGMDPKFLRNQRYA+KHN+  GA +G+ S
Sbjct: 5   KNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYARKHNQANGAGSGTGS 61


>tr|A9RU27|A9RU27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_205600 PE=4 SV=1
          Length = 63

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 34/51 (66%), Positives = 34/51 (66%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGA 155
           KNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHNR G A
Sbjct: 5   KNHTAHNQSYKNHKNGIKKVKKHKYASRKGMDPKFLRNQRYAKKHNRSGAA 55


>tr|A9SHM2|A9SHM2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106454 PE=4 SV=1
          Length = 63

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 33/52 (63%), Positives = 35/52 (67%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGAD 158
           KNHTAHNQSY              Y SRKGMDPKFLRNQRYAKKHN+ G A+
Sbjct: 5   KNHTAHNQSYKNHKNGIKKVKKHKYISRKGMDPKFLRNQRYAKKHNQTGAAE 56


>tr|A5BSZ9|A5BSZ9_VITVI Putative uncharacterized protein (Chromosome
           chr5 scaffold_64, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00033117001 PE=4 SV=1
          Length = 61

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 161
           KNHTAHNQSY              + S KGMDPKFLRNQRYA+KHN+  G  A
Sbjct: 5   KNHTAHNQSYKAHKNGIKKPRKHRHASTKGMDPKFLRNQRYARKHNKKSGESA 57


>tr|A9PCN1|A9PCN1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 61

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 33/61 (54%), Positives = 37/61 (60%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADAGSDSCAE 182
           KNHTAHNQS+              +TS KGMDPKFLRNQRYA+KHN+  G     DS  E
Sbjct: 5   KNHTAHNQSHKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKCG-----DSATE 59

Query: 183 E 185
           E
Sbjct: 60  E 60


>tr|A5BGX6|A5BGX6_VITVI Putative uncharacterized protein (Chromosome
           chr7 scaffold_42, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00028098001 PE=4 SV=1
          Length = 62

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 29/47 (61%), Positives = 32/47 (68%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNR 143
           KNHTAHNQSY              +TS KGMDPKFLRNQRYA+KHN+
Sbjct: 5   KNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNK 51


>tr|Q9FP55|Q9FP55_ORYSJ Os05g0355500 protein OS=Oryza sativa subsp.
           japonica GN=P0475H04.12 PE=4 SV=1
          Length = 60

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 29/50 (58%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 152
           KNHTAHNQSY               TS KGMDPKFLRNQRY++KHN+  G
Sbjct: 5   KNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|A2WNY2|A2WNY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01562 PE=4 SV=1
          Length = 60

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 29/50 (58%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGG 152
           KNHTAHNQSY               TS KGMDPKFLRNQRY++KHN+  G
Sbjct: 5   KNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSG 54


>tr|Q9MAW5|Q9MAW5_PANGI Ribosomal protein L29 OS=Panax ginseng
           GN=RPL29 PE=4 SV=1
          Length = 61

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/53 (54%), Positives = 33/53 (62%)
 Frame = +3

Query: 3   KNHTAHNQSYXXXXXXXXXXXXXXYTSRKGMDPKFLRNQRYAKKHNRVGGADA 161
           KNHTAHNQS+              +TS +GMDPKFLRNQRYA+KHN   G  A
Sbjct: 5   KNHTAHNQSHKAHRNGIKKPRKHRHTSTRGMDPKFLRNQRYARKHNNKTGESA 57