| DK951519 |
| Clone id |
TST38A01NGRL0011_K01 |
| Library |
TST38 |
| Length |
695 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_K01. 5' end sequence. |
| Accession |
DK951519 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL676Contig1 |
| Sequence |
GGGACGAAGGGATGGCAATGGCTGGTGTGCACTTGAAGCTCGCCATAGCCAGCTCTAGCA
GCGAGCTTTTCCCCTCATCACAGCGTCTACAGGCCTGCGCACTACCTTCCTTGTCACCCC
AGATACGCATTTCAGCTACGCGGTGCTCGCTCGCCAACAACAACAGCGGCAGCAGCGATG
GCCCCCAGCTCATTGTTAGCAAGAGGCAGCTCCTTACGGGCTCTGCATCTCTCGCCGTGT
CATCTCTTGTAGCTTTCCAGAGAGATGCGCAAGCAGAAGAGCTTCTTTCTGAATGGGAGA
TGGTGCCACTTCCCATTGACTCCGGTGTCGTGCTCTTGGATATCGCCTTTGTTCCTGACG
AACCTGATCATGGTTTCCTTCTAGGCACAAGGCAAACACTTCTGGAAACCAAAGATGGAG
GAAAATCATGGGCACCTCGATCTATTCCATCAGCAGAAGATGAGGATTTTAACTACAGGT
TTAATTCAATCAGCTTTTGTGGAAAGGAAGGTTGGATCGTCGGGAAACCAGCCATTCTTT
TGCACACTGCCGATGCAGGCATAAGCTGGGATCGAATTCCTCTAAGTTCAAGACTTCCTG
GCACTCCTGTAATTATCAAGGGAACGGGTGAAAAAGGTGCAGAGATGGTCACAGATGAGG
GAGCAATCTATGTCACGTCCAACAGGGGTTACAAT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O82660 |
| Definition |
sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana |
| Align length |
205 |
| Score (bit) |
243.0 |
| E-value |
7.0e-64 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951519|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_K01, 5'
(695 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor H... 243 7e-64
sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor H... 239 1e-62
sp|P48325|P2SAF_CYAPA Photosystem II stability/assembly factor H... 157 5e-38
sp|Q9AW48|P2SAF_GUITH Photosystem II stability/assembly factor H... 149 1e-35
sp|Q8YQI3|YC48L_ANASP Ycf48-like protein OS=Anabaena sp. (strain... 146 1e-34
sp|Q3MC08|YC48L_ANAVT Ycf48-like protein OS=Anabaena variabilis ... 145 3e-34
sp|Q8DI95|YC48L_THEEB Ycf48-like protein OS=Thermosynechococcus ... 135 3e-31
sp|P73069|YC48L_SYNY3 Ycf48-like protein OS=Synechocystis sp. (s... 132 2e-30
sp|Q8RSW4|YC48L_SYNP2 Ycf48-like protein OS=Synechococcus sp. (s... 127 4e-29
sp|Q2JW20|YC48L_SYNJA Ycf48-like protein OS=Synechococcus sp. (s... 126 1e-28
sp|Q31P11|YC48L_SYNE7 Ycf48-like protein OS=Synechococcus elonga... 125 3e-28
sp|Q2JJR3|YC48L_SYNJB Ycf48-like protein OS=Synechococcus sp. GN... 124 4e-28
sp|Q5N557|YC48L_SYNP6 Ycf48-like protein OS=Synechococcus sp. (s... 122 2e-27
sp|Q7V4Q3|YC48L_PROMM Ycf48-like protein OS=Prochlorococcus mari... 119 2e-26
sp|Q7VDP1|YC48L_PROMA Ycf48-like protein OS=Prochlorococcus mari... 114 4e-25
sp|Q3B0C5|YC48L_SYNS9 Ycf48-like protein OS=Synechococcus sp. (s... 112 2e-24
sp|Q7U9P8|YC48L_SYNPX Ycf48-like protein OS=Synechococcus sp. (s... 112 2e-24
sp|Q3AN55|YC48L_SYNSC Ycf48-like protein OS=Synechococcus sp. (s... 110 9e-24
sp|Q46M02|YC48L_PROMT Ycf48-like protein OS=Prochlorococcus mari... 109 1e-23
sp|Q7NMB1|YC48L_GLOVI Ycf48-like protein OS=Gloeobacter violaceu... 109 1e-23
sp|Q7V301|YC48L_PROMP Ycf48-like protein OS=Prochlorococcus mari... 109 2e-23
sp|Q31CN6|YC48L_PROM9 Ycf48-like protein OS=Prochlorococcus mari... 104 4e-22
sp|P49815|TSC2_HUMAN Tuberin OS=Homo sapiens GN=TSC2 PE=1 SV=1 32 3.3
sp|A1JHZ7|TPIS_YERE8 Triosephosphate isomerase OS=Yersinia enter... 32 3.3
sp|A3CY20|Y2347_METMJ Putative HTH-type transcriptional regulato... 31 5.5
sp|P85303|P2SAF_SPIOL Photosystem II stability/assembly factor H... 31 5.5
sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=H... 31 5.5
sp|Q9HZJ2|FADB_PSEAE Fatty acid oxidation complex subunit alpha ... 31 5.5
sp|Q02PH8|FADB_PSEAB Fatty acid oxidation complex subunit alpha ... 31 5.5
sp|A6V382|FADB_PSEA7 Fatty acid oxidation complex subunit alpha ... 31 5.5
>sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor
HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136
PE=1 SV=1
Length = 403
Score = 243 bits (620), Expect = 7e-64
Identities = 134/205 (65%), Positives = 150/205 (73%), Gaps = 8/205 (3%)
Frame = +3
Query: 105 PSLSPQI---RISATRCSLANNN-----SGSSDGPQLIVSKRQLLTGXXXXXXXXXXXFQ 260
PS+SP+ RIS A+++ S SS L S+R+LL
Sbjct: 15 PSVSPRFLSQRISHRLIPKASSSPPPSPSPSSSSSSLSFSRRELLY-QSAAVSLSLSSIV 73
Query: 261 RDAQAEELLSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPR 440
A+A+E LSEWE V LPID GVVLLDIAFVPDEP GFLLGTRQTLLETKDGG +W PR
Sbjct: 74 GPARADEQLSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPR 133
Query: 441 SIPSAEDEDFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIK 620
SIPSAE+EDFNYRFNSISF GKEGWI+GKPAILL+TADAG +WDRIPLSS+LPG V IK
Sbjct: 134 SIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIK 193
Query: 621 GTGEKGAEMVTDEGAIYVTSNRGYN 695
T +K AEMVTDEGAIYVTSNRGYN
Sbjct: 194 ATEDKSAEMVTDEGAIYVTSNRGYN 218
Score = 31.2 bits (69), Expect = 5.5
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 282 LLSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAED 461
+ E+E VP+ G +LD+ + +E + G LL T++GGKSW + A D
Sbjct: 319 ITEEFEEVPVQ-SRGFGILDVGYRSEE--EAWAAGGSGILLRTRNGGKSW---NRDKAAD 372
Query: 462 EDFNYRFNSISFC-GKEGWIVGKPAILL 542
+ ++ F K+G+++G +LL
Sbjct: 373 -NIAANLYAVKFVDDKKGFVLGNDGVLL 399
Score = 31.2 bits (69), Expect = 5.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 504 KEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVTDEGAI 668
+E W G ILL T + G SW+R + + +K +K ++ ++G +
Sbjct: 344 EEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVL 398
>sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor
HCF136, chloroplastic OS=Oryza sativa subsp. japonica
GN=HCF136 PE=3 SV=1
Length = 416
Score = 239 bits (610), Expect = 1e-62
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 285 LSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDE 464
LSEWE V LPID GVVLLDIAFVPD+P HGFLLGTRQT+LETK+GG +W PRSIPSAEDE
Sbjct: 73 LSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDE 132
Query: 465 DFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAE 644
DFNYRFNS+SF GKEGWI+GKPAILLHT+DAG SW+RIPLS++LPG V IK TGE+ AE
Sbjct: 133 DFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAE 192
Query: 645 MVTDEGAIYVTSNRGYN 695
MVTDEGAIYVTSNRGYN
Sbjct: 193 MVTDEGAIYVTSNRGYN 209
Score = 30.4 bits (67), Expect = 9.5
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 GVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFNYRFNSISFCG 503
G +LD+ + D + G LL+T +GGK+W + ++ S+ F G
Sbjct: 345 GFGILDVGY--RSKDEAWAAGGSGVLLKTTNGGKTW----VRDKAADNIAANLYSVKFLG 398
Query: 504 -KEGWIVGKPAILL 542
+G+++G +LL
Sbjct: 399 DNKGYVLGNDGVLL 412
>sp|P48325|P2SAF_CYAPA Photosystem II stability/assembly factor
HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1
Length = 333
Score = 157 bits (397), Expect = 5e-38
Identities = 78/133 (58%), Positives = 92/133 (69%)
Frame = +3
Query: 291 EWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDF 470
+WE +PL D +LLDI FVPD+P G+LLGTR TL ET D GK+W RS+ +D+
Sbjct: 32 KWEQIPLNTDE--ILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSLNLEDDK-- 87
Query: 471 NYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMV 650
YR NSISF GKEGW+ GKPAILLHT D G SW RIPLS++LPG P +I G AE+
Sbjct: 88 -YRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELA 146
Query: 651 TDEGAIYVTSNRG 689
TD GAIY T N G
Sbjct: 147 TDIGAIYRTENSG 159
>sp|Q9AW48|P2SAF_GUITH Photosystem II stability/assembly factor
HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3
SV=1
Length = 395
Score = 149 bits (377), Expect = 1e-35
Identities = 70/137 (51%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Frame = +3
Query: 288 SEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAE-DE 464
+ W V LP+DS VL DI F E HG+L+G++ T LET DGG +W PR+ + + DE
Sbjct: 69 TSWTKVDLPVDS--VLFDIEFTDPECKHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDE 126
Query: 465 DFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAE 644
+ YRF +ISF G+EGW++GKPAI+L+T D G +W R+P+S +LPG P +IK G + AE
Sbjct: 127 ELTYRFENISFEGQEGWVIGKPAIILYTKDGGKTWFRVPVSPKLPGEPCLIKALGSESAE 186
Query: 645 MVTDEGAIYVTSNRGYN 695
+ T GAIYVT+N G N
Sbjct: 187 LTTTSGAIYVTNNAGRN 203
>sp|Q8YQI3|YC48L_ANASP Ycf48-like protein OS=Anabaena sp. (strain
PCC 7120) GN=alr3844 PE=3 SV=1
Length = 339
Score = 146 bits (368), Expect = 1e-34
Identities = 75/134 (55%), Positives = 95/134 (70%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
W +V LP ++ LLDIAF + P HGFL+G+ TLLET DGG +W P ++ A D+D
Sbjct: 34 WAVVSLPTEAK--LLDIAFT-ENPQHGFLVGSSATLLETNDGGNNWQPLNL--ALDDD-R 87
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
YRF+S+SF GKEGWIVG+P++LLHT D G SW RIPLS +LPG P+ I+ G AEM T
Sbjct: 88 YRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMAT 147
Query: 654 DEGAIYVTSNRGYN 695
D GAIY T++ G N
Sbjct: 148 DVGAIYKTTDGGKN 161
>sp|Q3MC08|YC48L_ANAVT Ycf48-like protein OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1
Length = 339
Score = 145 bits (365), Expect = 3e-34
Identities = 74/134 (55%), Positives = 94/134 (70%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
W +V LP ++ LLDIAF + P HGFL+G+ TLLET DGG +W P ++ A D+D
Sbjct: 34 WAVVSLPTEAK--LLDIAFT-ENPQHGFLVGSNATLLETNDGGNNWQPLNL--ALDDD-R 87
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
YRF+S+SF GKEGWI G+P++LLHT D G SW RIPLS +LPG P+ I+ G AEM T
Sbjct: 88 YRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMAT 147
Query: 654 DEGAIYVTSNRGYN 695
D GAIY T++ G N
Sbjct: 148 DVGAIYKTTDGGKN 161
Score = 31.2 bits (69), Expect = 5.5
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 264 DAQAEELLSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRS 443
DAQ EL + W LLD+A+ P+ ++ G LL + DGGK+W
Sbjct: 247 DAQTPELATSWG-----------LLDMAY--RTPNEVWIGGGSGNLLVSTDGGKTWE--- 290
Query: 444 IPSAEDEDFNYRFNSISFC-GKEGWIVGKPAILL 542
+ E+ F + F +G+++G +LL
Sbjct: 291 -KDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLL 323
>sp|Q8DI95|YC48L_THEEB Ycf48-like protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=tll1695 PE=3 SV=1
Length = 347
Score = 135 bits (339), Expect = 3e-31
Identities = 65/134 (48%), Positives = 91/134 (67%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
WE + LP + +LD++F+ + HG+L+G TL+ET+DGG++W PR++ +
Sbjct: 47 WEAIQLPTTA--TILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSD--- 99
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
YRFNS+SF G EGWIVG+P I+LHT D G SW +IPL +LPG+P +IK G AEM+T
Sbjct: 100 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT 159
Query: 654 DEGAIYVTSNRGYN 695
+ GAIY T + G N
Sbjct: 160 NVGAIYRTKDSGKN 173
>sp|P73069|YC48L_SYNY3 Ycf48-like protein OS=Synechocystis sp.
(strain PCC 6803) GN=slr2034 PE=3 SV=1
Length = 342
Score = 132 bits (332), Expect = 2e-30
Identities = 67/134 (50%), Positives = 88/134 (65%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
W+ + L DS DIAF D P+HG+L+GT++T+ ET DGG +W + I E++
Sbjct: 40 WQEIALETDS--TFADIAFTED-PNHGWLVGTKETIFETTDGGDTWEQKLIDLGEEKA-- 94
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
F+++SF G EGWI GKP+ILLHT D G +W RIPLS +LPG P I G + AEM+T
Sbjct: 95 -SFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMIT 153
Query: 654 DEGAIYVTSNRGYN 695
D GAIY T+N G N
Sbjct: 154 DLGAIYKTTNGGKN 167
Score = 38.9 bits (89), Expect = 0.027
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 255 FQRDAQAEELLSEWEMVPLPIDSGVV-LLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSW 431
F D AEE W V P D G LLD++F P+ ++ G LL ++DGG++W
Sbjct: 243 FSTDPDAEE----WSDVIAPQDKGSWGLLDLSF--RTPEEVWVAGASGNLLMSQDGGQTW 296
Query: 432 APRSIPSAEDEDFNYRFNSISFCGKEGWIVGKPAILL 542
A + ED N + + ++G+++G+ ILL
Sbjct: 297 AKDT--GVEDIPANL-YRVVFLSPEKGFVLGQDGILL 330
>sp|Q8RSW4|YC48L_SYNP2 Ycf48-like protein OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A0229 PE=3 SV=1
Length = 340
Score = 127 bits (320), Expect = 4e-29
Identities = 67/134 (50%), Positives = 87/134 (64%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
W+ + L DS +IAF D+ HG+L+GT++TL ET DGGK+WA R I ++++
Sbjct: 38 WQEIDLNTDS--TFANIAFT-DDLQHGWLVGTKETLFETTDGGKTWAERVIDLGDEKE-- 92
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
F +SF G+EGWI G+P+ILLHT D G W RI LSS+LPG P I G AEMVT
Sbjct: 93 -SFTGVSFSGQEGWITGRPSILLHTDDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVT 151
Query: 654 DEGAIYVTSNRGYN 695
D GAIY T++ G N
Sbjct: 152 DLGAIYKTTDGGKN 165
>sp|Q2JW20|YC48L_SYNJA Ycf48-like protein OS=Synechococcus sp.
(strain JA-3-3Ab) GN=CYA_0848 PE=3 SV=2
Length = 334
Score = 126 bits (316), Expect = 1e-28
Identities = 63/132 (47%), Positives = 85/132 (64%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
W+ V +P + +LLDIAF P HG+L+G + TLLE++DGG W R + + E E +
Sbjct: 33 WQQVEVPTQN--ILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAY- 89
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVT 653
+SISF G EGW+VG+P ILLHT + G W I LS +LPG P++I+ G AEMVT
Sbjct: 90 --LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVT 147
Query: 654 DEGAIYVTSNRG 689
+ GAIY T + G
Sbjct: 148 NVGAIYRTEDGG 159
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A5JVZ6 |
| Definition |
tr|A5JVZ6|A5JVZ6_MAIZE Plastid high chlorophyll fluorescence 136 OS=Zea mays |
| Align length |
145 |
| Score (bit) |
242.0 |
| E-value |
2.0e-62 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951519|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_K01, 5'
(695 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A5JVZ6|A5JVZ6_MAIZE Plastid high chlorophyll fluorescence 136... 242 2e-62
tr|A9RRW8|A9RRW8_PHYPA Predicted protein OS=Physcomitrella paten... 241 3e-62
tr|Q0D9A9|Q0D9A9_ORYSJ Os06g0729500 protein OS=Oryza sativa subs... 239 1e-61
tr|B8B2X2|B8B2X2_ORYSI Putative uncharacterized protein OS=Oryza... 239 1e-61
tr|A3BFM5|A3BFM5_ORYSJ Putative uncharacterized protein OS=Oryza... 239 1e-61
tr|A9T9I6|A9T9I6_PHYPA Predicted protein OS=Physcomitrella paten... 238 3e-61
tr|A7P2W0|A7P2W0_VITVI Chromosome chr1 scaffold_5, whole genome ... 238 4e-61
tr|A4S6D5|A4S6D5_OSTLU Predicted protein OS=Ostreococcus lucimar... 186 2e-45
tr|A8HVJ9|A8HVJ9_CHLRE Photosystem II stability/assembly factor ... 169 2e-40
tr|Q00X74|Q00X74_OSTTA Sortilin and related receptors (ISS) (Fra... 168 3e-40
tr|A9BKA9|A9BKA9_9CRYP Hfc136 OS=Cryptophyta GN=HAN_1g100 PE=4 SV=1 152 2e-35
tr|B2J6S9|B2J6S9_NOSP7 Glycosyl hydrolase, BNR repeat-containing... 146 1e-33
tr|B8HVD6|B8HVD6_9CHRO Ycf48-like protein OS=Cyanothece sp. PCC ... 145 3e-33
tr|B0C6T3|B0C6T3_ACAM1 Photosystem II stability/assembly factor ... 141 3e-32
tr|A0ZI40|A0ZI40_NODSP Glycosyl hydrolase, BNR repeat OS=Nodular... 139 2e-31
tr|B7G3A6|B7G3A6_PHATR Predicted protein OS=Phaeodactylum tricor... 136 1e-30
tr|B8CFN3|B8CFN3_THAPS Predicted protein OS=Thalassiosira pseudo... 135 2e-30
tr|Q2IA25|Q2IA25_PAVLU Chloroplast stability factor hcf136 (Frag... 134 6e-30
tr|B4WII0|B4WII0_9SYNE BNR/Asp-box repeat domain protein OS=Syne... 134 7e-30
tr|A0YVX5|A0YVX5_9CYAN Putative uncharacterized protein OS=Lyngb... 131 4e-29
tr|B4W448|B4W448_9CYAN BNR/Asp-box repeat domain protein OS=Micr... 131 5e-29
tr|Q10YT1|Q10YT1_TRIEI Glycosyl hydrolase, BNR repeat OS=Trichod... 129 2e-28
tr|Q4BV34|Q4BV34_CROWT Glycosyl hydrolase, BNR repeat OS=Crocosp... 128 4e-28
tr|B3DF98|B3DF98_MICAN Ycf48-like protein OS=Microcystis aerugin... 126 2e-27
tr|B4B7A7|B4B7A7_9CHRO Glycosyl hydrolase BNR repeat-containing ... 125 3e-27
tr|A3IRL1|A3IRL1_9CHRO Putative uncharacterized protein OS=Cyano... 125 3e-27
tr|B1WVS1|B1WVS1_CYAA5 Probable photosystem II stability/assembl... 125 3e-27
tr|B5W813|B5W813_SPIMA Glycosyl hydrolase, BNR repeat OS=Arthros... 124 6e-27
tr|A8YAZ5|A8YAZ5_MICAE Similar to tr|Q4BV34|Q4BV34_CROWT Glycosy... 124 6e-27
tr|Q9XBL9|Q9XBL9_ANAVA Putative uncharacterized protein (Fragmen... 123 1e-26
>tr|A5JVZ6|A5JVZ6_MAIZE Plastid high chlorophyll fluorescence 136
OS=Zea mays GN=HCF136 PE=4 SV=1
Length = 394
Score = 242 bits (617), Expect = 2e-62
Identities = 116/145 (80%), Positives = 131/145 (90%), Gaps = 2/145 (1%)
Frame = +3
Query: 267 AQAEEL--LSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPR 440
A+A+E+ LSEWE + LPIDSGVVLLDIAFVPD+P HGFLLGTRQT+LETKDGG +W PR
Sbjct: 65 ARADEVPALSEWERIFLPIDSGVVLLDIAFVPDDPSHGFLLGTRQTILETKDGGNTWFPR 124
Query: 441 SIPSAEDEDFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIK 620
SIPSAEDEDFNYRFNS+SF G+EGWI+GKPAILLHT+DAG SW+RIPLS++LPG V IK
Sbjct: 125 SIPSAEDEDFNYRFNSVSFKGREGWIIGKPAILLHTSDAGESWERIPLSAQLPGNMVYIK 184
Query: 621 GTGEKGAEMVTDEGAIYVTSNRGYN 695
TGE+ AEMVTDEGAIYVTSNRGYN
Sbjct: 185 ATGEQSAEMVTDEGAIYVTSNRGYN 209
>tr|A9RRW8|A9RRW8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160605 PE=4 SV=1
Length = 434
Score = 241 bits (615), Expect = 3e-62
Identities = 127/234 (54%), Positives = 158/234 (67%), Gaps = 4/234 (1%)
Frame = +3
Query: 6 EGMAMAGVHLKLAIASSSSELFPSSQRLQACALPSLSPQIRISATRCSLANNNSGSSDGP 185
+G+ G L A +SS++ F + R + + +P + C + S +
Sbjct: 17 QGILAKGSRLSSASSSSTAIPFFTGFRGDSNVKAANAPVESCAFKGCVVTPVASLEDEET 76
Query: 186 QLIVSKRQLLTGXXXXXXXXXXXFQRD----AQAEELLSEWEMVPLPIDSGVVLLDIAFV 353
++S+R +L D A A+E +S WE V LP+D GVVLLD+AFV
Sbjct: 77 VAVLSRRSVLAASTAALSLGALSGGSDGNDAALADETISSWEQVTLPVDPGVVLLDMAFV 136
Query: 354 PDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFNYRFNSISFCGKEGWIVGKPA 533
PD+PD GFLLGTRQTLLETKDGG+SW+PRSIPSAEDEDFNYRFNSISF G+EGWI+GKPA
Sbjct: 137 PDQPDRGFLLGTRQTLLETKDGGRSWSPRSIPSAEDEDFNYRFNSISFQGQEGWIIGKPA 196
Query: 534 ILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVTDEGAIYVTSNRGYN 695
ILLHT++ G SW+RIPLS RLPG P+ I+GTG + AEMVTDEGAIYVTSN GYN
Sbjct: 197 ILLHTSNGGESWERIPLSVRLPGNPITIRGTGPQSAEMVTDEGAIYVTSNNGYN 250
>tr|Q0D9A9|Q0D9A9_ORYSJ Os06g0729500 protein OS=Oryza sativa subsp.
japonica GN=Os06g0729500 PE=4 SV=1
Length = 1573
Score = 239 bits (610), Expect = 1e-61
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 285 LSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDE 464
LSEWE V LPID GVVLLDIAFVPD+P HGFLLGTRQT+LETK+GG +W PRSIPSAEDE
Sbjct: 73 LSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDE 132
Query: 465 DFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAE 644
DFNYRFNS+SF GKEGWI+GKPAILLHT+DAG SW+RIPLS++LPG V IK TGE+ AE
Sbjct: 133 DFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAE 192
Query: 645 MVTDEGAIYVTSNRGYN 695
MVTDEGAIYVTSNRGYN
Sbjct: 193 MVTDEGAIYVTSNRGYN 209
>tr|B8B2X2|B8B2X2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_24541 PE=4 SV=1
Length = 1485
Score = 239 bits (610), Expect = 1e-61
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 285 LSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDE 464
LSEWE V LPID GVVLLDIAFVPD+P HGFLLGTRQT+LETK+GG +W PRSIPSAEDE
Sbjct: 73 LSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDE 132
Query: 465 DFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAE 644
DFNYRFNS+SF GKEGWI+GKPAILLHT+DAG SW+RIPLS++LPG V IK TGE+ AE
Sbjct: 133 DFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAE 192
Query: 645 MVTDEGAIYVTSNRGYN 695
MVTDEGAIYVTSNRGYN
Sbjct: 193 MVTDEGAIYVTSNRGYN 209
>tr|A3BFM5|A3BFM5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_021847 PE=4 SV=1
Length = 464
Score = 239 bits (610), Expect = 1e-61
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 285 LSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDE 464
LSEWE V LPID GVVLLDIAFVPD+P HGFLLGTRQT+LETK+GG +W PRSIPSAEDE
Sbjct: 73 LSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDE 132
Query: 465 DFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAE 644
DFNYRFNS+SF GKEGWI+GKPAILLHT+DAG SW+RIPLS++LPG V IK TGE+ AE
Sbjct: 133 DFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSWERIPLSAQLPGNMVYIKATGEQSAE 192
Query: 645 MVTDEGAIYVTSNRGYN 695
MVTDEGAIYVTSNRGYN
Sbjct: 193 MVTDEGAIYVTSNRGYN 209
Score = 40.4 bits (93), Expect = 0.11
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +3
Query: 324 GVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWA-PRSIPSAEDEDFNYRFNSISF- 497
G +LD+ + D + G LL+T +GGK+W ++ + ++ + S +F
Sbjct: 345 GFGILDVGY--RSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKLKSSAFH 402
Query: 498 CGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVTDEGAI 668
E W G +LL T + G +W R + + +K G+ ++ ++G +
Sbjct: 403 LQDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVL 459
>tr|A9T9I6|A9T9I6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_142308 PE=4 SV=1
Length = 353
Score = 238 bits (607), Expect = 3e-61
Identities = 111/143 (77%), Positives = 126/143 (88%)
Frame = +3
Query: 267 AQAEELLSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSI 446
A A+E +S WE V LP+D GVVLLD+AFVPD+PD GFLLGTRQTLLETKD G+SW+PRSI
Sbjct: 10 ALADETISSWEQVVLPVDPGVVLLDMAFVPDQPDRGFLLGTRQTLLETKDAGRSWSPRSI 69
Query: 447 PSAEDEDFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGT 626
PSAEDEDFNYRFNSISF G+EGWI+GKPAILLHT++ G SW+RIPLS RLPG P+ I+GT
Sbjct: 70 PSAEDEDFNYRFNSISFQGQEGWIIGKPAILLHTSNGGESWERIPLSIRLPGNPITIRGT 129
Query: 627 GEKGAEMVTDEGAIYVTSNRGYN 695
G AEMVTDEGAIYVTSN+GYN
Sbjct: 130 GPDSAEMVTDEGAIYVTSNKGYN 152
>tr|A7P2W0|A7P2W0_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00030205001
PE=4 SV=1
Length = 404
Score = 238 bits (606), Expect = 4e-61
Identities = 115/140 (82%), Positives = 125/140 (89%)
Frame = +3
Query: 276 EELLSEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSA 455
E LLSEWE V LPID GVVLLDIAFVPD+ HGFLLGTRQT++ETKDGG +W PRSIPSA
Sbjct: 80 EPLLSEWERVYLPIDPGVVLLDIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSA 139
Query: 456 EDEDFNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEK 635
EDEDFNYRFNSISF GKEGWIVGKP+ILL+T+DAG SW+RIPLS++LPG V IK TGEK
Sbjct: 140 EDEDFNYRFNSISFKGKEGWIVGKPSILLYTSDAGESWERIPLSAQLPGDIVYIKATGEK 199
Query: 636 GAEMVTDEGAIYVTSNRGYN 695
AEMVTDEGAIYVTSNRGYN
Sbjct: 200 SAEMVTDEGAIYVTSNRGYN 219
>tr|A4S6D5|A4S6D5_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_47343 PE=4 SV=1
Length = 363
Score = 186 bits (471), Expect = 2e-45
Identities = 86/137 (62%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Frame = +3
Query: 288 SEWEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDED 467
S WE V LP++ GV+LLDIAF ++P HGFLLGTRQT+LETKDGGK+W R + D+D
Sbjct: 35 SYWEQVELPLEPGVILLDIAFSSNDPKHGFLLGTRQTVLETKDGGKTWDVRDLSGLLDDD 94
Query: 468 FNYRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKG-AE 644
NYRFNS+SFCG EGWI+GKPA+LLHT D G +W+R+ LS RLPG PV+I + G AE
Sbjct: 95 VNYRFNSVSFCGDEGWIIGKPAVLLHTTDGGANWERVGLSPRLPGAPVLITAVQDNGTAE 154
Query: 645 MVTDEGAIYVTSNRGYN 695
MVTDEGAIY T + N
Sbjct: 155 MVTDEGAIYFTKDAARN 171
>tr|A8HVJ9|A8HVJ9_CHLRE Photosystem II stability/assembly factor
HCF136 (Fragment) OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_112806 PE=4 SV=1
Length = 302
Score = 169 bits (428), Expect = 2e-40
Identities = 79/110 (71%), Positives = 89/110 (80%)
Frame = +3
Query: 363 PDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFNYRFNSISFCGKEGWIVGKPAILL 542
P GFLLGTRQTLLET DGGK+WAPRSI +A DE FNYRFNSISF GKEGWIVGKPAILL
Sbjct: 3 PTKGFLLGTRQTLLETNDGGKTWAPRSIDAARDEGFNYRFNSISFAGKEGWIVGKPAILL 62
Query: 543 HTADAGISWDRIPLSSRLPGTPVIIKGTGEKGAEMVTDEGAIYVTSNRGY 692
HT+D G +W+RIPLSS+LPG V++ AEM+TD+GAIYVT N Y
Sbjct: 63 HTSDGGANWERIPLSSKLPGKGVVLDSLAPGQAEMITDQGAIYVTDNTAY 112
>tr|Q00X74|Q00X74_OSTTA Sortilin and related receptors (ISS)
(Fragment) OS=Ostreococcus tauri GN=Ot13g01090 PE=4 SV=1
Length = 337
Score = 168 bits (425), Expect = 3e-40
Identities = 79/135 (58%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Frame = +3
Query: 294 WEMVPLPIDSGVVLLDIAFVPDEPDHGFLLGTRQTLLETKDGGKSWAPRSIPSAEDEDFN 473
WE V LP++ GV+LLDIAFV ++ GFLLGTRQT+LET +GGK+W R + D+D N
Sbjct: 12 WERVELPLEPGVILLDIAFVNEQ--RGFLLGTRQTILETTNGGKTWDARDLTGLLDDDVN 69
Query: 474 YRFNSISFCGKEGWIVGKPAILLHTADAGISWDRIPLSSRLPGTPVIIKGTGEKG-AEMV 650
YRFNS+SF G+EGWI+GKPA+LLHT D G +W+R+ LS RLPG P+++ + G AEMV
Sbjct: 70 YRFNSVSFAGEEGWIIGKPAVLLHTVDGGKNWERVGLSPRLPGAPLLVTAVKDNGTAEMV 129
Query: 651 TDEGAIYVTSNRGYN 695
TDEGAIY T + N
Sbjct: 130 TDEGAIYFTKDAARN 144
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