| DK951541 |
| Clone id |
TST38A01NGRL0011_K23 |
| Library |
TST38 |
| Length |
680 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_K23. 5' end sequence. |
| Accession |
DK951541 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL2863Contig1 |
| Sequence |
CGCCAATCAGCGAGCATGTCAGTCCACTGCTGCAAGCAGCACGCCTATCTGCACACTGAA TCATCCTCTTCGACGAGCACACTAGGAAAAGGTATATGAGAGAAGCTATAATGAGTAGCA ACGCCCCGCCGCTATGGAGCACACGTTTCTTCTGGAATCTGAAGGGTGTGGAAGTAAAGA GAAGAAAAGTAGCTGTGAGGTCCTCATCAGCAGCTCAGAAGGAGGTGACAAGTCAGAACT TACAGAGTCATGTGATCATTACTGGTGGCAATTGCGGCATTGGCAAGGCAACTGCTGTTG ATCTGGCAAAACAAGGAATGCATGTAACTTTGGCATGCAGGAGCAAAGAGAGAGGTGACA AGGCCTGTTTGGAAGTCTCCCAAATGTCTGGGAATCCAAATGTCAGGACAATGATGTGTG ATCTGGCCTCATTCGACTCAATTCATAAATTTGTGGAGGAATATCGTCGAGAGGGGCTTC CACTACATGTCTTGGTGAATAATGCAGGAATAATGGCTTGCCCTCAGTCATACACCAAAG ATGGATTTGAAATGCAGTTTGGGGTCAACCATCTAGGACATTTTTTGCTTACAAGGCTTC TTTTAAGCACTCTGGCAGAAAGTGCCTCTCTTGGGCTAAATTCAAGGGTGGTTGTCCTGG CATCTATGGGGGAGCGTTTC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9QYF1 |
| Definition |
sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus |
| Align length |
105 |
| Score (bit) |
105.0 |
| E-value |
2.0e-22 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951541|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_K23, 5' (680 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus G... 105 2e-22 sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus G... 103 8e-22 sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens G... 103 1e-21 sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member ... 100 5e-21 sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus G... 100 9e-21 sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens G... 98 4e-20 sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens G... 96 2e-19 sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=... 95 3e-19 sp|A6QP05|DHR12_BOVIN Dehydrogenase/reductase SDR family member ... 92 3e-18 sp|A0PJE2|DHR12_HUMAN Dehydrogenase/reductase SDR family member ... 90 1e-17 sp|Q8VBZ0|DHRSX_MOUSE Dehydrogenase/reductase SDR family member ... 89 2e-17 sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member ... 89 3e-17 sp|Q9HBH5|RDH14_HUMAN Retinol dehydrogenase 14 OS=Homo sapiens G... 87 8e-17 sp|Q6UX07|DHR13_HUMAN Dehydrogenase/reductase SDR family member ... 87 8e-17 sp|Q9ERI6|RDH14_MOUSE Retinol dehydrogenase 14 OS=Mus musculus G... 87 1e-16 sp|Q17QU7|DHR13_BOVIN Dehydrogenase/reductase SDR family member ... 87 1e-16 sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo... 86 1e-16 sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pong... 85 4e-16 sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus ... 84 9e-16 sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gall... 84 9e-16 sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Dani... 83 1e-15 sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic O... 81 4e-15 sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic... 77 6e-14 sp|Q41578|PORA_WHEAT Protochlorophyllide reductase A, chloroplas... 77 6e-14 sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplas... 77 8e-14 sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplas... 77 1e-13 sp|P15904|POR_AVESA Protochlorophyllide reductase (Fragment) OS=... 74 5e-13 sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplasti... 74 7e-13 sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplas... 73 1e-12 sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplas... 73 1e-12
>sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2 Length = 316
Score = 105 bits (263), Expect = 2e-22 Identities = 52/105 (49%), Positives = 67/105 (63%) Frame = +3
Query: 255 IITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLASF 434 I+TG N GIGK TA DLA++G V LACR ++G+ A E+ ++GN V DLA Sbjct: 42 IVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADT 101
Query: 435 DSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI F +++ E LH+L+NNAG+M CP S T DGFEM GVN Sbjct: 102 KSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVN 146
>sp|Q8CEE7|RDH13_MOUSE Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1 Length = 334
Score = 103 bits (257), Expect = 8e-22 Identities = 53/106 (50%), Positives = 70/106 (66%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 VI+TG N GIGK TA++LAK+G +V LACR E+ + A ++ + NP VR DLAS Sbjct: 41 VIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLAS 100
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI +F + +E + +LVNNA +M CP T+DGFEMQFGVN Sbjct: 101 LKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVN 146
>sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 Length = 318
Score = 103 bits (256), Expect = 1e-21 Identities = 51/106 (48%), Positives = 65/106 (61%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 V++TG N GIGK TA +LA++G V LACR E+G+ E+ +GN V DL+ Sbjct: 44 VVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSD 103
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI F + + E LHVL+NNAG+M CP S T DGFEM GVN Sbjct: 104 TKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVN 149
>sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=1 Length = 330
Score = 100 bits (250), Expect = 5e-21 Identities = 47/105 (44%), Positives = 70/105 (66%) Frame = +3
Query: 255 IITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLASF 434 I+TGG GIG +TA LA+ GMHV +A + + + ++ + + N V + CDLAS Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASM 106
Query: 435 DSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI +FV++++ + +PLHVL+NNAG+M PQ T+DGFE FG+N Sbjct: 107 TSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLN 151
>sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 Length = 316
Score = 100 bits (248), Expect = 9e-21 Identities = 50/106 (47%), Positives = 64/106 (60%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 V+ITG N GIGK TA +LA++G V +ACR +G+ A E+ + N V DL+ Sbjct: 42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSD 101
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI F E + E LH+L+NNAG+M CP S T DGFE FGVN Sbjct: 102 TKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVN 147
>sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=2 SV=2 Length = 331
Score = 98.2 bits (243), Expect = 4e-20 Identities = 49/106 (46%), Positives = 69/106 (65%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 VI+TG N GIGK TA++LA++G ++ LACR E+ + A ++ + N +V DLAS Sbjct: 41 VIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLAS 100
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI +F + E + +L+NNAG+M CP T+DGFEMQFGVN Sbjct: 101 LKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVN 146
>sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 Length = 316
Score = 95.9 bits (237), Expect = 2e-19 Identities = 49/106 (46%), Positives = 62/106 (58%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 V+ITG N GIGK TA +LA +G V +ACR +G+ A E+ + N V DL+ Sbjct: 42 VVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSD 101
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI F E + E LH+L+NNAG+M CP S T DGFE GVN Sbjct: 102 TKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVN 147
>sp|P59837|RDH12_BOVIN Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 Length = 316
Score = 95.1 bits (235), Expect = 3e-19 Identities = 48/106 (45%), Positives = 62/106 (58%) Frame = +3
Query: 252 VIITGGNCGIGKATAVDLAKQGMHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLAS 431 V+ITG N GIGK TA +LA++G V +ACR +G+ A E+ + N V DL+ Sbjct: 42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSD 101
Query: 432 FDSIHKFVEEYRREGLPLHVLVNNAGIMACPQSYTKDGFEMQFGVN 569 SI F E + E LH+L+NNAG+M CP S T DGFE VN Sbjct: 102 TKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVN 147
>sp|A6QP05|DHR12_BOVIN Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1 Length = 317
Score = 92.0 bits (227), Expect = 3e-18 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 5/144 (3%) Frame = +3
Query: 153 WNLKGVEVKRRKVAVRSSSAAQKEVTSQNLQSHV-----IITGGNCGIGKATAVDLAKQG 317 W KG+ R+ +A K+ +L+ V ++TGGN GIGKATA+++AK+G Sbjct: 9 WFAKGL----REYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRG 64
Query: 318 MHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLASFDSIHKFVEEYRREGLPLHVLV 497 V L CR R + A E+ + SGN N+ + DL+ S+ KFVE +++E L+VL+ Sbjct: 65 GTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFKQEH-TLNVLI 123
Query: 498 NNAGIMACPQSYTKDGFEMQFGVN 569 NNAG M + T+DG E F N Sbjct: 124 NNAGCMVNKRELTEDGLEKNFATN 147
>sp|A0PJE2|DHR12_HUMAN Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2 Length = 317
Score = 90.1 bits (222), Expect = 1e-17 Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 5/144 (3%) Frame = +3
Query: 153 WNLKGVEVKRRKVAVRSSSAAQKEVTSQNLQSHV-----IITGGNCGIGKATAVDLAKQG 317 W KG+ R+ +A K+ +L+ + ++TGGN GIGKATA+++AK+G Sbjct: 9 WFAKGL----REYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRG 64
Query: 318 MHVTLACRSKERGDKACLEVSQMSGNPNVRTMMCDLASFDSIHKFVEEYRREGLPLHVLV 497 V L CR + + A E+ + SGN N+ + DL+ I KFVE +++E LHVL+ Sbjct: 65 GTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEH-KLHVLI 123
Query: 498 NNAGIMACPQSYTKDGFEMQFGVN 569 NNAG M + T+DG E F N Sbjct: 124 NNAGCMVNKRELTEDGLEKNFAAN 147
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9T463 |
| Definition |
tr|A9T463|A9T463_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
| Align length |
135 |
| Score (bit) |
125.0 |
| E-value |
2.0e-27 |
| Report |
 |