BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951557|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_L15, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05787|HRD3_YEAST ERAD-associated E3 ubiquitin-protein ligase...    33   1.9  
sp|Q96VG1|YBAI_SCHPO Uncharacterized protein C119.18 OS=Schizosa...    32   4.2  
sp|P83714|CTF2_MOUSE Cardiotrophin-2 OS=Mus musculus GN=Ctf2 PE=...    32   4.2  
sp|Q09578|COL75_CAEEL Putative cuticle collagen 75 OS=Caenorhabd...    31   7.2  
sp|Q2JW78|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp....    30   9.4  

>sp|Q05787|HRD3_YEAST ERAD-associated E3 ubiquitin-protein ligase
           component HRD3 OS=Saccharomyces cerevisiae GN=HRD3 PE=1
           SV=1
          Length = 833

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 408 TISPHLSVKRRLVYQRLFALQLGNSWLKSPMPRKWHVGFN--KQF-KNLFFYSDL 563
           T+ P  S K  L YQR  A QLGN   K  +  K++ GFN  + F K+L  Y D+
Sbjct: 165 TVIPQDSAKALLYYQR--AAQLGNLKAKQVLAYKYYSGFNVPRNFHKSLVLYRDI 217


>sp|Q96VG1|YBAI_SCHPO Uncharacterized protein C119.18
           OS=Schizosaccharomyces pombe GN=SPBC119.18 PE=2 SV=1
          Length = 69

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 492 SPMPRKWHVGFNKQFKNLFFYSDLHNREC 578
           +P  +K+   FN  + N F   DLHNR+C
Sbjct: 10  TPAKKKYDACFNDWYANKFLKGDLHNRDC 38


>sp|P83714|CTF2_MOUSE Cardiotrophin-2 OS=Mus musculus GN=Ctf2 PE=1
           SV=1
          Length = 204

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 493 ARCRESGMLGSTSSLRICFSIPICITENVYGSNPYSPNLFGKRKAGY 633
           AR R  G+LG+ +++     +PI   E+  G  P+  + F ++  GY
Sbjct: 132 ARLRAQGLLGNMAAIMTALGLPIPPEEDTLGFVPFGASAFERKCRGY 178


>sp|Q09578|COL75_CAEEL Putative cuticle collagen 75
           OS=Caenorhabditis elegans GN=col-75 PE=2 SV=1
          Length = 285

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 445 YISACLPSSWGTVG*RARCRESGMLGSTSSLRICFSIPICITENVYGSN--PYSPNLFGK 618
           YI+ C P   G  G   +  + G+ G   S  I   +P  + + V+G    PY P    K
Sbjct: 80  YINTCPPGRIGITGPDGQPGKDGLPGMPGSPGIPGELPNILYQQVFGCRICPYGP----K 135

Query: 619 RKAGYK 636
            K+GYK
Sbjct: 136 GKSGYK 141


>sp|Q2JW78|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1
          Length = 394

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 142 GPHEISSSFHELSGVGGFAKLASPSDRDYLGLRAGFLPSRDKPVSTHNL 288
           G    +S F + +G+GGFA L      ++ G   G+  SR  PV   +L
Sbjct: 74  GAAAAASGFQDFAGIGGFADLFESFFTNFAGGGVGYSRSRQGPVRGDDL 122

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951557|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_L15, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ABI8|B6ABI8_9CRYT Putative uncharacterized protein OS=Crypt...    37   1.5  

>tr|B6ABI8|B6ABI8_9CRYT Putative uncharacterized protein
            OS=Cryptosporidium muris RN66 GN=CMU_027500 PE=4 SV=1
          Length = 1841

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 477  NSWLKSPMPRKWHVGFNKQFKNLFFYSDLHNREC 578
            N WL  P  + W VG+NK   N ++ S++ N +C
Sbjct: 1626 NGWLTHPCIKSWDVGYNKSLGNKYYNSEILNFDC 1659