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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951560
Clone id TST38A01NGRL0011_L18
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_L18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTATATGGAGGAGGAATACCGCTGACTTTTGGGAAACTGATCCTCCATAGAAACTAAGT
CTTCCATCAACAAGAAGGCAACTAAGTCTTCCATCAACAAGAAGGGATCCAATTCTTCTG
CAAATTGACAACAGCAACAGATGATGCATCCTATTGCAAGGATATCTGCCACCCTAACCA
AGCGATTTAGGCATGAATTGGACTTTTTAAGAGGAACAGGGTTTTCAGAGGAAGAGCAGT
CAAGGATTCTTTCAACACCGTACCTTCAAAGTGATGTGATGGCTTTGAAAGACCTGCATT
TGTCAATTGCTCCCGTTACTCGAACTGAAAGCCCAGGAAACACACCCGCAGCTTTTAATC
AACAGAGAATGGAACAACAATCAAATAAAAGACCAGGAAAACTTGGCCTAAAACCCAAGT
GGATGAAGTTGTAGTCAACGATTTCTTCAAAAAGGTCTTGAAAACATTGCACAGCAGGTC
ACAGTGCCTATATTATACACGCATTCTTTAGAAGTAAAGCCCAAGGTTGCATCAGGTTAA
GGTTATGCATCTTCATACATAAGCAATCACATCCACGAGATGATGTATAGCATCGATTGC
TGTGTTTTCTGTACTTATGCTGTGCTCAATGAAAATAATGACACCCATGGGATGGCAGAT
TTAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O80513
Definition sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana
Align length 78
Score (bit) 34.7
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951560|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_L18, 5'
         (662 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYC...    35   0.46 
sp|O74711|PEX5_CANAL Peroxisomal targeting signal receptor OS=Ca...    30   8.7  
sp|A1L2F3|NUSAP_DANRE Nucleolar and spindle-associated protein 1...    30   8.7  
sp|Q24371|L2DTL_DROME Protein lethal(2)denticleless OS=Drosophil...    30   8.7  

>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana
           GN=CYCU4-1 PE=1 SV=1
          Length = 202

 Score = 34.7 bits (78), Expect = 0.46
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 156 ARISATLTKRFRH-ELDFLRGTGFSEEEQSRILST--PYLQSDVMALKDLHLSIAPVTRT 326
           A++    TK     ELDFL G GF         +    YLQ ++  L+ L L + P +R+
Sbjct: 122 AKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPSSRS 181

Query: 327 ESPGNTPAAFNQQRMEQQ 380
               N   A +Q++ +QQ
Sbjct: 182 LITFNDDEASHQKQQQQQ 199


>sp|O74711|PEX5_CANAL Peroxisomal targeting signal receptor
           OS=Candida albicans GN=PEX5 PE=3 SV=2
          Length = 592

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 189 RHELDFLRGTGFSEEEQSRILSTPYLQSDVMALKDLHLSIAPVTRTESPGNTPAA--FNQ 362
           RHEL+ ++    +  +Q    S      D +A         P+ +T SP N   A  F+Q
Sbjct: 80  RHELNTIQNQPNAIHQQQSNWS-----QDFVAQSPSAQITTPIAKTGSPVNAQWASEFSQ 134

Query: 363 QRMEQQSNKRPGKLG 407
               QQ N+RPG+ G
Sbjct: 135 APATQQHNQRPGQFG 149


>sp|A1L2F3|NUSAP_DANRE Nucleolar and spindle-associated protein 1
           OS=Danio rerio GN=nusap1 PE=2 SV=2
          Length = 446

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 246 ILSTPYLQSDVMALKDLHLSIAPVTRTESPGNTPAAFN 359
           + STP  +SDV +  +L+ S + +T+T  PG TP  FN
Sbjct: 314 LTSTPGRKSDVRSKAELNRSASTITKT--PGATPFVFN 349


>sp|Q24371|L2DTL_DROME Protein lethal(2)denticleless OS=Drosophila
           melanogaster GN=l(2)dtl PE=1 SV=2
          Length = 769

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 225 SEEEQSRILSTPYLQSDVMALKDLHLSIAP---VTRTESPGNTPAAFNQQRMEQQSNKRP 395
           SEE+Q+ +L++P LQS   +     +  +P   ++ T+  G TPA  +     Q   K P
Sbjct: 645 SEEQQADVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQPKTP 704
tr_hit_id A9NWT9
Definition tr|A9NWT9|A9NWT9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 58
Score (bit) 42.0
E-value 0.034
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951560|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_L18, 5'
         (662 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NWT9|A9NWT9_PICSI Putative uncharacterized protein OS=Picea...    42   0.034
tr|B4SN08|B4SN08_STRM5 Lipid A biosynthesis acyltransferase OS=S...    37   1.1  
tr|B2FNB0|B2FNB0_STRMK Putative acyltransferase OS=Stenotrophomo...    37   1.1  
tr|Q9LK22|Q9LK22_ARATH Gb|AAF57656.1 (At3g27310) (Putative uncha...    37   1.1  
tr|Q7MYA8|Q7MYA8_PHOLL Complete genome; segment 16/17 OS=Photorh...    36   2.4  
tr|A9PA84|A9PA84_POPTR Putative uncharacterized protein OS=Popul...    36   2.4  
tr|B4F1R0|B4F1R0_PROMH Putative CDP-alcohol phosphatidyltransfer...    35   5.4  
tr|A9PAY0|A9PAY0_POPTR Putative uncharacterized protein OS=Popul...    34   7.1  

>tr|A9NWT9|A9NWT9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score = 42.0 bits (97), Expect = 0.034
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 258 PYLQSDVMALKDLHLSIAPVTRTESPGNTPAAFNQQRMEQQSNKRPGKLGLKPKWMKL 431
           P+L+ D+MAL+DLH S+      E P  +     +   E  +N+   K  +KPKW+++
Sbjct: 191 PFLRDDIMALRDLH-SLLEAKEAEKPAESEPLAAEPPPEPSNNRPVAKKDVKPKWLRM 247


>tr|B4SN08|B4SN08_STRM5 Lipid A biosynthesis acyltransferase
           OS=Stenotrophomonas maltophilia (strain R551-3)
           GN=Smal_3918 PE=4 SV=1
          Length = 313

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 194 MPKSLG*GGRYPCNRMH---HLLLLSICRRIGSLLVDGRLSCL 75
           + K LG GGRYP  R+H    L+L  I RR G L++   + CL
Sbjct: 94  LDKILGLGGRYPAERIHLHRDLVLEKIARREGGLILTAHIGCL 136


>tr|B2FNB0|B2FNB0_STRMK Putative acyltransferase OS=Stenotrophomonas
           maltophilia (strain K279a) GN=Smlt4566 PE=4 SV=1
          Length = 313

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 194 MPKSLG*GGRYPCNRMH---HLLLLSICRRIGSLLVDGRLSCL 75
           + K LG GGRYP  R+H    L+L  I RR G L++   + CL
Sbjct: 94  LDKILGLGGRYPAERIHLHRDLVLEKIARREGGLILTAHIGCL 136


>tr|Q9LK22|Q9LK22_ARATH Gb|AAF57656.1 (At3g27310) (Putative
           uncharacterized protein At3g27310) (CDC48-interacting
           UBX-domain protein) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=PUX1 PE=2 SV=1
          Length = 251

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 252 STPYLQSDVMALKDLHLSIAPVTRTESPGNTPAAFNQQRMEQQSNKRPGKLGLKPKWMKL 431
           STPYL  ++++LKDL      V   ES        +     +   K   K   KPKW K+
Sbjct: 192 STPYLNEEILSLKDLEAMTKAVEPVESSSEPATVDSSAVPVEHERKSTEKKTTKPKWFKM 251


>tr|Q7MYA8|Q7MYA8_PHOLL Complete genome; segment 16/17
           OS=Photorhabdus luminescens subsp. laumondii GN=plu4777
           PE=4 SV=1
          Length = 224

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 158 CNRMHHLLLLSICRRIGSLLVDGRLSCLLVDGRLSFYGGSVSQKSAVF 15
           C  +    L SI   IG+LL+ GRL C L+DG ++  GG  +    VF
Sbjct: 55  CFLVESFWLTSILLIIGALLIQGRLMCNLLDGMVAVEGGLKTAAGTVF 102


>tr|A9PA84|A9PA84_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 229

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 225 SEEEQSRILSTPYLQSDVMALKDLHLS---IAPVTRTESPGNTPAAFNQQRMEQQSNKRP 395
           ++ +   + S P+LQ +VM+LK L +    + P+  T  P  T           Q  K  
Sbjct: 163 NQVDNEAVNSGPFLQEEVMSLKGLDVMPEPVEPIHTTPEPVTTAPP-----PVPQEPKAA 217

Query: 396 GKLGLKPKWMKL 431
           GK  +KPKW+K+
Sbjct: 218 GKKPVKPKWLKM 229


>tr|B4F1R0|B4F1R0_PROMH Putative CDP-alcohol phosphatidyltransferase
           OS=Proteus mirabilis (strain HI4320) GN=PMI2193 PE=4
           SV=1
          Length = 222

 Score = 34.7 bits (78), Expect = 5.4
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -1

Query: 137 LLLSICRRIGSLLVDGRLSCLLVDGRLSFYGGSVSQKSAVF 15
           LL SI   +G+L + GRL C L+DG ++  GG  S   AV+
Sbjct: 61  LLQSILLILGALAIQGRLICNLLDGMVAVEGGLKSPAGAVY 101


>tr|A9PAY0|A9PAY0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 250

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 231 EEQSRILSTPYLQSDVMALKDLHLSIAPV----TRTESPGNTPAAFNQQRMEQQSNKRPG 398
           E+ +   S P+LQ +VM+LK L +   P     T  E     P    Q+       K  G
Sbjct: 186 EDNAAFSSGPFLQEEVMSLKGLDVVPEPAEPVQTALEPVRTAPPPVPQEP------KAAG 239

Query: 399 KLGLKPKWMKL 431
           K  +KPKW+K+
Sbjct: 240 KKPVKPKWLKM 250