BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951579|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_M14, 5'
         (218 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta OS...    31   2.2  

>sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta
           OS=Oenothera elata subsp. hookeri GN=rpoB PE=3 SV=2
          Length = 1072

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 139 KNTWIESLEVKKRGKCLN*GTGEAAGATRPRSPMALWANLMLA 11
           KNTW+       RGKC+  G   A GA      +AL  N+++A
Sbjct: 617 KNTWMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVA 659

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951579|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_M14, 5'
         (218 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2Y5X4|B2Y5X4_9ASTR RNA polymerase beta subunit (Fragment) OS...    33   7.2  
tr|B5CQX9|B5CQX9_9FIRM Putative uncharacterized protein OS=Rumin...    33   9.4  

>tr|B2Y5X4|B2Y5X4_9ASTR RNA polymerase beta subunit (Fragment)
           OS=Hecastocleis shockleyi GN=rpoB PE=4 SV=1
          Length = 1023

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 181 DSIHLRCKRENNYLKNTWIESLEVKKRGKCLN*GTGEAAGATRPRSPMALWANLMLA 11
           D++ +   R     KNTW+      +RGKC+  G   A GA      +AL  N+++A
Sbjct: 560 DTLSIPLVRYQRSNKNTWMHQKAQVRRGKCIKKGQILAYGAATVGGELALGKNVLVA 616


>tr|B5CQX9|B5CQX9_9FIRM Putative uncharacterized protein
            OS=Ruminococcus lactaris ATCC 29176 GN=RUMLAC_01876 PE=4
            SV=1
          Length = 1898

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 214  KNGCITVVMKVDSIHLRCKRENNYLKNTWIESLEVKKRG 98
            KNG IT+  + ++ ++ CK E N LK TW E + +   G
Sbjct: 1052 KNGRITLEAESETPYVVCKGEENNLKITWSEGMHIVDAG 1090