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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951591
Clone id TST38A01NGRL0011_N02
Library
Length 678
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_N02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGGCAATGGTCATGGAGATGGGGCTTGTGAACAAAGAGGTTTTCCAGGGATCAATTCAAG
CAAGTGCATCAGAGGCACAGAAAGCCCAGTGTGAATGTTGCAACCTTGTAGAGGAGTGTA
CACCTGAATATATAGCACAGGTGCAAGGGTTGTATTATGGAAGGTGGATTTGTGGGCTTT
GTGCAGAGGCAGTGAAAGAAGAACATAGGAGAGGAGGTGGAGGAGGAAGCAGAAAAGAGG
GTCTGGAAGATGCCTTAATGGAGCATATGAGCGTGTGTATGAAATTTAACAGGCCAGAGC
GGGTGGGGAGCCCTGTTGCCGACATTTCAGCAGCAGTAAGAAGGATGTTGCGACGCAATA
CAGAGGTACGGTTTACGTCTCGGTCAGCACCCAGCAGCCCAAGTCGCCGAGCTCCAATTA
GTCGTGCCAACAGCTGCTTTGGCGCGTTTCCTCCAGGTTCTGAAGCCCCAGTTTGAGTCA
GATTCCCTTTACGCTTGCTCTTGCCGGCTCATTATTGGGTGCCATCAGGCCATTCTCTTC
ATTGCGGTCAGCTTGTTGCTACAAGGTAATGACTGCAACAAGTATTCTTTGTCTATACTT
ACACTCCAGAAGCTGCACAATTTACTAGGCTCAAGCCAAAACTTATCAAGGAAAAATTTT
TTGCTTTTCCCATTTTGG
■■Homology search results ■■ -
sp_hit_id Q69U54
Definition sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 30.8
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951591|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_N02, 5'
         (678 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativ...    31   6.9  
sp|Q5FVL3|FA69B_RAT Protein FAM69B OS=Rattus norvegicus GN=Fam69...    31   6.9  
sp|Q99ML4|FA69B_MOUSE Protein FAM69B OS=Mus musculus GN=Fam69b P...    31   6.9  
sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B P...    30   9.1  

>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa
           subsp. japonica GN=TULP12 PE=2 SV=1
          Length = 451

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +2

Query: 353 TQYRGTVYVSVSTQQPKSPSSN*SCQQLLWRVSSRF*SPSLSQIPFTLALAGSLLGAIRP 532
           + + GT +V   TQ P +  S  SCQ    R+SSR  SP L    + +A     L  +  
Sbjct: 197 SNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTGSYPIAHVKYELNVLGT 256

Query: 533 FSSLRSACCYKVMTATSI 586
               R  C    + A+++
Sbjct: 257 RGPRRMQCTMHSIPASAV 274


>sp|Q5FVL3|FA69B_RAT Protein FAM69B OS=Rattus norvegicus GN=Fam69b
           PE=2 SV=2
          Length = 431

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 400 QVAELQLVVPTAALARFLQVLKPQFESDSLYACSCR 507
           ++A+LQ V P A + RFLQ    +  SD +Y   CR
Sbjct: 312 KMADLQQVAPEATVRRFLQGRHCEQSSDCIYGRDCR 347


>sp|Q99ML4|FA69B_MOUSE Protein FAM69B OS=Mus musculus GN=Fam69b PE=2
           SV=1
          Length = 431

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 400 QVAELQLVVPTAALARFLQVLKPQFESDSLYACSCR 507
           ++A+LQ V P A + RFLQ    +  SD +Y   CR
Sbjct: 312 KMADLQQVAPEATVRRFLQGRHCEQSSDCIYGRDCR 347


>sp|Q5VUD6|FA69B_HUMAN Protein FAM69B OS=Homo sapiens GN=FAM69B PE=2
           SV=2
          Length = 431

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 400 QVAELQLVVPTAALARFLQVLKPQFESDSLYACSCR 507
           ++A+LQ V P A + RFLQ  + +  +D  Y   CR
Sbjct: 312 KMADLQQVAPEATVRRFLQGRRCEHSTDCTYGRDCR 347
tr_hit_id A9NZC0
Definition tr|A9NZC0|A9NZC0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 106
Score (bit) 92.0
E-value 3.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951591|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_N02, 5'
         (678 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NZC0|A9NZC0_PICSI Putative uncharacterized protein OS=Picea...    92   3e-17
tr|A7P557|A7P557_VITVI Chromosome chr4 scaffold_6, whole genome ...    90   1e-16
tr|A5BHR0|A5BHR0_VITVI Putative uncharacterized protein OS=Vitis...    90   1e-16
tr|Q9CA85|Q9CA85_ARATH Putative uncharacterized protein F19K16.2...    88   4e-16
tr|A9NM86|A9NM86_PICSI Putative uncharacterized protein OS=Picea...    88   4e-16
tr|A9TZP3|A9TZP3_PHYPA Predicted protein (Fragment) OS=Physcomit...    87   1e-15
tr|A7P751|A7P751_VITVI Chromosome chr9 scaffold_7, whole genome ...    86   3e-15
tr|A5ALB1|A5ALB1_VITVI Putative uncharacterized protein OS=Vitis...    84   6e-15
tr|B6UF89|B6UF89_MAIZE Putative uncharacterized protein OS=Zea m...    82   2e-14
tr|A9RCV5|A9RCV5_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   3e-14
tr|A9NZS5|A9NZS5_PICSI Putative uncharacterized protein OS=Picea...    82   3e-14
tr|B6UH96|B6UH96_MAIZE Putative uncharacterized protein OS=Zea m...    82   4e-14
tr|Q9C9E9|Q9C9E9_ARATH Putative uncharacterized protein T10D10.2...    80   9e-14
tr|Q337Z8|Q337Z8_ORYSJ cDNA clone:J023082F14, full insert sequen...    80   2e-13
tr|A2Z7F6|A2Z7F6_ORYSI Putative uncharacterized protein OS=Oryza...    80   2e-13
tr|A7NWQ1|A7NWQ1_VITVI Chromosome chr5 scaffold_2, whole genome ...    79   2e-13
tr|Q4VWY5|Q4VWY5_ORYSJ Putative uncharacterized protein B1046G12...    78   4e-13
tr|A2WLQ9|A2WLQ9_ORYSI Putative uncharacterized protein OS=Oryza...    78   4e-13
tr|Q6F2Z6|Q6F2Z6_ORYSJ Putative uncharacterized protein P0483D07...    78   6e-13
tr|A3B5Y3|A3B5Y3_ORYSJ Putative uncharacterized protein OS=Oryza...    77   1e-12
tr|A2Y6M1|A2Y6M1_ORYSI Putative uncharacterized protein OS=Oryza...    77   1e-12
tr|B6SJC3|B6SJC3_MAIZE Putative uncharacterized protein OS=Zea m...    77   1e-12
tr|Q8LC22|Q8LC22_ARATH Putative uncharacterized protein OS=Arabi...    75   3e-12
tr|Q8GW85|Q8GW85_ARATH Putative uncharacterized protein At5g2584...    75   3e-12
tr|A9P1F0|A9P1F0_PICSI Putative uncharacterized protein OS=Picea...    75   3e-12
tr|Q75H92|Q75H92_ORYSJ Putative uncharacterized protein OSJNBa00...    75   4e-12
tr|Q10FJ7|Q10FJ7_ORYSJ Os03g0665700 protein OS=Oryza sativa subs...    75   4e-12
tr|A2XKD2|A2XKD2_ORYSI Putative uncharacterized protein OS=Oryza...    75   4e-12
tr|B7FMI8|B7FMI8_MEDTR Putative uncharacterized protein OS=Medic...    74   6e-12
tr|A7P752|A7P752_VITVI Chromosome chr9 scaffold_7, whole genome ...    74   6e-12

>tr|A9NZC0|A9NZC0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 150

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 47/106 (44%), Positives = 64/106 (60%)
 Frame = +3

Query: 48  GSIQASASEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXX 227
           GS   S+ E + A+CECC L EECTP YIA+V+  +YG+W+CGLCAEAVK          
Sbjct: 2   GSQGNSSMEVELAKCECCGLKEECTPAYIARVRDRFYGKWVCGLCAEAVK----DELCRA 57

Query: 228 XXXXXLEDALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTE 365
                +EDAL  HM  C +FN      +P  +++ A+R++LRR  E
Sbjct: 58  ESGIGMEDALNAHMQFCSQFN-----VNPAVNVADAMRQILRRRFE 98


>tr|A7P557|A7P557_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032408001
           PE=4 SV=1
          Length = 153

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 45/99 (45%), Positives = 65/99 (65%)
 Frame = +3

Query: 69  SEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXXLE 248
           SE + A+CECC++ EECTPEYI+Q++  + G+ ICGLCAEAVK               +E
Sbjct: 56  SEVENAKCECCDMCEECTPEYISQIRDKFSGKLICGLCAEAVK------EEMEKKGWKIE 109

Query: 249 DALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTE 365
           +A+ EHMS C++FNR  R   PV   + A+R ML+R+++
Sbjct: 110 EAVNEHMSACVRFNRFGRT-HPVLYQAEAMREMLKRSSK 147


>tr|A5BHR0|A5BHR0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034793 PE=4 SV=1
          Length = 183

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 45/100 (45%), Positives = 65/100 (65%)
 Frame = +3

Query: 69  SEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXXLE 248
           SE + A+CECC++ EECTPEYI+Q++  + G+ ICGLCAEAVK               +E
Sbjct: 50  SEXENAKCECCDMCEECTPEYISQIRDKFSGKLICGLCAEAVK------EEMGKKGWKIE 103

Query: 249 DALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTEV 368
           +A+ EHMS C++FNR  R   PV   + A+R ML+R++ +
Sbjct: 104 EAVXEHMSACVRFNRFGRT-HPVLYQAEAMREMLKRSSSM 142


>tr|Q9CA85|Q9CA85_ARATH Putative uncharacterized protein F19K16.25
           OS=Arabidopsis thaliana GN=At1g79770 PE=4 SV=1
          Length = 167

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 46/97 (47%), Positives = 61/97 (62%)
 Frame = +3

Query: 72  EAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXXLED 251
           E +KA+CECC + EECT EYI +V+  ++G+WICGLC+EAVK               LE 
Sbjct: 51  EVEKAKCECCGMREECTMEYIERVREKFFGKWICGLCSEAVK-----EERDKREEEGLEG 105

Query: 252 ALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNT 362
           AL EHMS C++FN+  R   P    + A+R MLRR+T
Sbjct: 106 ALKEHMSACLRFNKLGR-EYPALFQADAMRDMLRRST 141


>tr|A9NM86|A9NM86_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 162

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 44/102 (43%), Positives = 61/102 (59%)
 Frame = +3

Query: 60  ASASEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXX 239
           A + E + A CECC L EECTP YIA+V+  +YGRW+CGLC EAVK              
Sbjct: 27  AQSCEVEFAACECCGLTEECTPAYIARVRERFYGRWVCGLCGEAVK----DELFRSDRLI 82

Query: 240 XLEDALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTE 365
            +E+AL  HM+ CM+F R     SP   +  A+R++LR++ +
Sbjct: 83  GMEEALEAHMTFCMQF-RANVHTSPAVRLVGAMRKLLRKSLD 123


>tr|A9TZP3|A9TZP3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8542 PE=4 SV=1
          Length = 87

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 42/92 (45%), Positives = 57/92 (61%)
 Frame = +3

Query: 90  CECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXXLEDALMEHM 269
           CECC L EECTP Y+A+++ +Y GR +CGLC EAVK               +EDAL  HM
Sbjct: 1   CECCGLAEECTPGYVARMKAMYCGRLLCGLCGEAVK----EERMRMGPVTSMEDALSAHM 56

Query: 270 SVCMKFNRPERVGSPVADISAAVRRMLRRNTE 365
            +C KFN   R   P AD++ A+R++LR++ E
Sbjct: 57  KICFKFNTFTR-QDPAADLAQAMRQILRKSIE 87


>tr|A7P751|A7P751_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034326001
           PE=4 SV=1
          Length = 180

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 45/115 (39%), Positives = 64/115 (55%)
 Frame = +3

Query: 27  VNKEVFQGSIQASASEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXX 206
           ++KE          SE + A+CECC + EECTPEYI +V+  + G+WICGLC EAVK   
Sbjct: 41  LSKEAIGDLTLPPISEVEDAKCECCGMSEECTPEYIKRVRDKFLGKWICGLCTEAVKEEI 100

Query: 207 XXXXXXXXXXXXLEDALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTEVR 371
                        E+AL  HM+ C +FN+  R   PV   + A+R +L+++T  R
Sbjct: 101 EKNGGKK------EEALSTHMNACSRFNKLGR-AYPVLFQAEAMREILKKSTSPR 148


>tr|A5ALB1|A5ALB1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005458 PE=4 SV=1
          Length = 179

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 41/101 (40%), Positives = 58/101 (57%)
 Frame = +3

Query: 63  SASEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXX 242
           S  E + A+C+CC L EECTPEYI  V+  Y GRWICGLC+EAVK               
Sbjct: 44  SQIEVEFAKCDCCGLTEECTPEYIETVRERYNGRWICGLCSEAVK-EEMIQMKRFQRLIS 102

Query: 243 LEDALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRRNTE 365
            E+A+ +HM+ C  F       +P   + +A+R++LRR+ +
Sbjct: 103 TEEAVDQHMNFCKNFRSSSPPSNPTFHLISAMRQLLRRSLD 143


>tr|B6UF89|B6UF89_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 204

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 44/118 (37%), Positives = 66/118 (55%)
 Frame = +3

Query: 3   AMVMEMGLVNKEVFQGSIQASASEAQKAQCECCNLVEECTPEYIAQVQGLYYGRWICGLC 182
           A + ++  + ++  Q    A   E + A+CECC + EECTP+Y+ +V+  Y GRW+CGLC
Sbjct: 56  AKLQQLPAIAEQQQQQQQTAEEEEEELARCECCGMQEECTPQYVRRVRDRYCGRWVCGLC 115

Query: 183 AEAVKXXXXXXXXXXXXXXXLEDALMEHMSVCMKFNRPERVGSPVADISAAVRRMLRR 356
           A AV                 E AL  HM+VC +FNR  R  +PV   + A+R++LR+
Sbjct: 116 AAAVS------AEAEGGRATTEAALAAHMAVCGRFNRVGR-ANPVLLQTEAMRQILRK 166


>tr|A9RCV5|A9RCV5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_29197 PE=4 SV=1
          Length = 85

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 39/90 (43%), Positives = 55/90 (61%)
 Frame = +3

Query: 87  QCECCNLVEECTPEYIAQVQGLYYGRWICGLCAEAVKXXXXXXXXXXXXXXXLEDALMEH 266
           +CECC + EECTP Y+A+++ ++ GR +CGLC EAVK               +E AL  H
Sbjct: 1   KCECCGITEECTPGYVARMKAMFCGRLVCGLCGEAVK----EERMRMGPETSMESALCAH 56

Query: 267 MSVCMKFNRPERVGSPVADISAAVRRMLRR 356
           M +C KFN   R   P AD++ A+R++LRR
Sbjct: 57  MKICFKFNTFTR-QDPAADLAQAMRQILRR 85