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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951617
Clone id TST38A01NGRL0011_O04
Library
Length 675
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_O04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGCGCGGCTCACAGATACGCAGCTCTTCGCCTCTTCATATTCTGCTCCCGTCTCTCATA
CACAGACACGAACCTACAGGATTCGGAATCCTTGCTCTCATCGCCGACGATGGCTCTCGT
TTTCAAGGTCAAGCATGGAGACACCCTCCGCAGATGGGTGGTTTCTGACTCAATCAGTGC
AGAGATGTTCCCAGTTACATTGGAGCAATTGCAGGCCAAAGTCAGGGAGCTCTTCCAGTT
CCCTCCTTCTGCTGTGCTCGCTTTTACCTACTTAGATAAAGATAATGATGTGGTTACGCT
GGGGGATGATCGTGATCTTGTGGACGCATGTCTTGTTCAATGCTTGAACCCACTTCGCCT
TGAGGTTCAGGTCTTGGAATCAAAGTCAAATGGAAGTGATCGCGCACACCAGCCAGCAGA
CAATTACAACATGGAAGTCTTTCTAAAGCTTTTGTTTCCTCATGCAACAGCTGAGGCTTT
GCAAGGTTTTCTACAGTCGCTTGACCCTTCGCTATCTATTGCAACTCTTATTTTAAAGGC
TCAGGATGCTTTCAAGGACTTCTTAGCTCATGCAGCAAGGCCAGAGTTTCCCAAACCTGG
ACCATCGGATAAGCCTGCTCATCATCATCCATACAAGCACCCTTTTGGAGATATGCACTG
CAAATCCATGCCCAA
■■Homology search results ■■ -
sp_hit_id O13965
Definition sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe
Align length 63
Score (bit) 34.3
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951617|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_O04, 5'
         (675 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein O...    34   0.62 
sp|Q03396|L_SV5WR Large structural protein OS=Simian virus 5 (st...    31   5.2  
sp|Q88434|L_SV5 Large structural protein OS=Simian virus 5 (stra...    31   5.2  
sp|P75444|Y334_MYCPN Putative ABC transporter ATP-binding protei...    30   8.9  

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein
           OS=Schizosaccharomyces pombe GN=mug70 PE=1 SV=1
          Length = 730

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 254 VLAFTYLDKDNDVVTLGDDRDLVDACLVQCLNPL-RLEVQVLESKSNGSDRAHQPADNYN 430
           ++  TY+D + DVV L  D DL +A L+     L RLEV+ + + +N  + +H P    +
Sbjct: 612 LVTLTYIDDEGDVVELVSDSDLREAILLARRRGLPRLEVRGVAAFTNHLESSHPPISTVD 671

Query: 431 MEV 439
             +
Sbjct: 672 SSI 674


>sp|Q03396|L_SV5WR Large structural protein OS=Simian virus 5 (strain
            21004-WR) GN=L PE=3 SV=1
          Length = 2255

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
 Frame = +2

Query: 83   SESLLSSPTMALVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVL- 259
            S SL +   +A V+    GDTL  W+ +  +S     +TLEQLQ+    L   P SA L 
Sbjct: 1236 SSSLKAVLRLAGVYIWAFGDTLENWIDALDLSHTRVNITLEQLQS----LTPLPTSANLT 1291

Query: 260  ---------------------AFTYLDKDNDVVTLGD 307
                                 +FT++  D   +T+ D
Sbjct: 1292 HRLDDGTTTLKFTPASSYTFSSFTHISNDEQYLTIND 1328


>sp|Q88434|L_SV5 Large structural protein OS=Simian virus 5 (strain
            W3) GN=L PE=3 SV=1
          Length = 2255

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
 Frame = +2

Query: 83   SESLLSSPTMALVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVL- 259
            S SL +   +A V+    GDTL  W+ +  +S     +TLEQLQ+    L   P SA L 
Sbjct: 1236 SSSLKAVLRLAGVYIWAFGDTLENWIDALDLSHTRVNITLEQLQS----LTPLPTSANLT 1291

Query: 260  ---------------------AFTYLDKDNDVVTLGD 307
                                 +FT++  D   +T+ D
Sbjct: 1292 HRLDDGTTTLKFTPASSYTFSSFTHISNDEQYLTIND 1328


>sp|P75444|Y334_MYCPN Putative ABC transporter ATP-binding protein
           MPN_334 OS=Mycoplasma pneumoniae GN=MPN_334 PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +2

Query: 125 KVKHGDTLRRWVVSDSISAEMFPVT------LEQLQAK--VRELFQFPPSAVLAF 265
           KV + D+LR+W+ +  I+ + FP T      L+Q Q+     EL+Q P   V  F
Sbjct: 236 KVNNSDSLRKWLKAQKIAYKYFPATDDFQVDLKQKQSNKFAVELYQQPDFEVFIF 290
tr_hit_id A9SHX9
Definition tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 85.1
E-value 4.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951617|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_O04, 5'
         (675 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella paten...    85   4e-15
tr|A9NT24|A9NT24_PICSI Putative uncharacterized protein OS=Picea...    80   9e-14
tr|A9NP76|A9NP76_PICSI Putative uncharacterized protein OS=Picea...    79   2e-13
tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum ...    77   8e-13
tr|Q7XK43|Q7XK43_ORYSJ Os04g0476800 protein OS=Oryza sativa subs...    74   8e-12
tr|Q01JY6|Q01JY6_ORYSA OSIGBa0116M22.2 protein OS=Oryza sativa G...    74   8e-12
tr|B8AVG3|B8AVG3_ORYSI Putative uncharacterized protein OS=Oryza...    74   8e-12
tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subs...    74   1e-11
tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza...    74   1e-11
tr|Q0ZII2|Q0ZII2_NICPL Joka2 (Fragment) OS=Nicotiana plumbaginif...    66   2e-09
tr|A9S1V5|A9S1V5_PHYPA Predicted protein OS=Physcomitrella paten...    58   6e-07
tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g2469...    52   4e-05
tr|A5ADS2|A5ADS2_VITVI Putative uncharacterized protein OS=Vitis...    51   6e-05
tr|A0C582|A0C582_PARTE Chromosome undetermined scaffold_15, whol...    37   0.87 
tr|Q14VK1|Q14VK1_9VIRU ORF129 OS=Ranid herpesvirus 1 PE=4 SV=1         37   1.5  
tr|Q55CE3|Q55CE3_DICDI ZZ-type Zn finger-containing protein OS=D...    37   1.5  
tr|A8N2P6|A8N2P6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    37   1.5  
tr|A9RSB9|A9RSB9_PHYPA SWI/SNF class chromatin remodeling comple...    35   5.6  
tr|B6NHG6|B6NHG6_BRAFL Putative uncharacterized protein OS=Branc...    35   5.6  
tr|Q4SQC2|Q4SQC2_TETNG Chromosome 4 SCAF14533, whole genome shot...    35   5.7  
tr|Q39GN9|Q39GN9_BURS3 ABC cobalamin/Fe3+-siderophore transporte...    34   9.6  
tr|Q3XXI1|Q3XXI1_ENTFC Haloacid dehalogenase-like hydrolase:Cati...    34   9.6  
tr|A0C9S2|A0C9S2_PARTE Chromosome undetermined scaffold_16, whol...    34   9.6  
tr|A7EUB6|A7EUB6_SCLS1 Putative uncharacterized protein OS=Scler...    34   9.6  

>tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212537 PE=4 SV=1
          Length = 732

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 42/88 (47%), Positives = 55/88 (62%)
 Frame = +2

Query: 119 VFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDVVT 298
           VFK+KHGD +RR+ V  S+      +   QL+  +R+ F+ P S+ L   Y DKD DVVT
Sbjct: 5   VFKIKHGDVVRRFTVQPSVPGGGPDMNFSQLEDTIRQAFKLPASSDLVINYNDKDGDVVT 64

Query: 299 LGDDRDLVDACLVQCLNPLRLEVQVLES 382
           +  D DL DAC++Q LNPLRL V   ES
Sbjct: 65  MAGDHDLYDACVIQELNPLRLTVTAHES 92


>tr|A9NT24|A9NT24_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 174

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
 Frame = +2

Query: 110 MALVFKVKHGDTLRRWVVSDSISAEMFP-VTLEQLQAKVRELFQFPPSAVLAFTYLDKDN 286
           MALV KVK+   LRR  +   +  E  P + ++ L+ K+RELF+  P+A ++ TY D+D 
Sbjct: 1   MALVVKVKYQGILRRLTLQ--LREEYVPEINMDALKCKIRELFKLNPNADMSITYTDEDG 58

Query: 287 DVVTLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQPAD--NYNMEVFLKLL 454
           DVVT+ DD D +DA + Q LNPLRL+V +    SN S+R+  PA+  N  ME  L+ L
Sbjct: 59  DVVTMADDVDFLDA-VRQGLNPLRLDVSLATEPSN-SERSSTPAEQRNEGMEPLLEAL 114


>tr|A9NP76|A9NP76_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 174

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
 Frame = +2

Query: 110 MALVFKVKHGDTLRRWVVSDSISAEMFP-VTLEQLQAKVRELFQFPPSAVLAFTYLDKDN 286
           M LV KVK+   LRR  +   +  E  P + ++ L+ K+RELF+  P+A ++ TY D+D 
Sbjct: 1   MTLVVKVKYQGILRRLTLQ--LREEYVPEINMDALKCKIRELFKLNPNADMSITYTDEDG 58

Query: 287 DVVTLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQPAD--NYNMEVFLKLL 454
           DVVT+ DD D +DA + Q LNPLRL+V +    SN S+R+  PA+  N  ME  L+ L
Sbjct: 59  DVVTMADDVDFLDA-VRQGLNPLRLDVSLATEPSN-SERSSSPAEQRNEGMEPLLEAL 114


>tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum
           aestivum GN=UBA PE=2 SV=1
          Length = 870

 Score = 77.4 bits (189), Expect = 8e-13
 Identities = 41/94 (43%), Positives = 58/94 (61%)
 Frame = +2

Query: 116 LVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDVV 295
           +V KVK+GDTL+R+  +  ++   F + L  L++K+   F+F P A    TY D+D DVV
Sbjct: 21  VVVKVKYGDTLKRF--NGYVNGTHFTLNLSALRSKIASAFKFAPDADFILTYTDEDGDVV 78

Query: 296 TLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGS 397
            L DD DL DA + Q LNPLR+ VQ+  S +  S
Sbjct: 79  MLDDDEDLHDAAIHQKLNPLRINVQLKNSHAGAS 112


>tr|Q7XK43|Q7XK43_ORYSJ Os04g0476800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0044K18.2 PE=4 SV=1
          Length = 881

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 42/99 (42%), Positives = 58/99 (58%)
 Frame = +2

Query: 116 LVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDVV 295
           LV KVK G TL+R+     ++   F + L  L++K+   F+F P      TY D+D DVV
Sbjct: 18  LVVKVKFGGTLKRFTAF--VNGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTDEDGDVV 75

Query: 296 TLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQ 412
            L DD DL DA + Q LNPLR+ V+ L+S S+G  +  Q
Sbjct: 76  ILDDDSDLCDAAISQRLNPLRINVE-LKSSSDGVHQTKQ 113


>tr|Q01JY6|Q01JY6_ORYSA OSIGBa0116M22.2 protein OS=Oryza sativa
           GN=OSIGBa0116M22.2 PE=4 SV=1
          Length = 881

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 42/99 (42%), Positives = 58/99 (58%)
 Frame = +2

Query: 116 LVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDVV 295
           LV KVK G TL+R+     ++   F + L  L++K+   F+F P      TY D+D DVV
Sbjct: 18  LVVKVKFGGTLKRFTAF--VNGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTDEDGDVV 75

Query: 296 TLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQ 412
            L DD DL DA + Q LNPLR+ V+ L+S S+G  +  Q
Sbjct: 76  ILDDDSDLCDAAISQRLNPLRINVE-LKSSSDGVHQTKQ 113


>tr|B8AVG3|B8AVG3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16310 PE=4 SV=1
          Length = 881

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 42/99 (42%), Positives = 58/99 (58%)
 Frame = +2

Query: 116 LVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDVV 295
           LV KVK G TL+R+     ++   F + L  L++K+   F+F P      TY D+D DVV
Sbjct: 18  LVVKVKFGGTLKRFTAF--VNGPHFDLNLAALRSKIASAFKFNPDTEFVLTYTDEDGDVV 75

Query: 296 TLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQ 412
            L DD DL DA + Q LNPLR+ V+ L+S S+G  +  Q
Sbjct: 76  ILDDDSDLCDAAISQRLNPLRINVE-LKSSSDGVHQTKQ 113


>tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1067_B01.6-1 PE=2 SV=1
          Length = 845

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
 Frame = +2

Query: 86  ESLLSSPT-MALVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLA 262
           E L S P    +V KVK+G+TL+R+     +    F + L  L++K+   F+F       
Sbjct: 10  EGLASRPDEWDVVLKVKYGETLKRF--GGYVQGPQFSLNLSALRSKIASAFKFGSDVDFI 67

Query: 263 FTYLDKDNDVVTLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQPADN 424
            TY D+D D+V L DD DL DA + Q LNPLR+ VQ+  S +       Q +DN
Sbjct: 68  LTYTDEDGDIVMLDDDDDLHDAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSDN 121


>tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07886 PE=4 SV=1
          Length = 845

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
 Frame = +2

Query: 86  ESLLSSPT-MALVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLA 262
           E L S P    +V KVK+G+TL+R+     +    F + L  L++K+   F+F       
Sbjct: 10  EGLASRPDEWDVVLKVKYGETLKRF--GGYVQGPQFSLNLSALRSKIASAFKFGSDVDFI 67

Query: 263 FTYLDKDNDVVTLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQPADN 424
            TY D+D D+V L DD DL DA + Q LNPLR+ VQ+  S +       Q +DN
Sbjct: 68  LTYTDEDGDIVMLDDDDDLHDAAIHQKLNPLRINVQLNNSHTAAPQAKQQDSDN 121


>tr|Q0ZII2|Q0ZII2_NICPL Joka2 (Fragment) OS=Nicotiana
           plumbaginifolia PE=2 SV=1
          Length = 467

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 40/102 (39%), Positives = 62/102 (60%)
 Frame = +2

Query: 113 ALVFKVKHGDTLRRWVVSDSISAEMFPVTLEQLQAKVRELFQFPPSAVLAFTYLDKDNDV 292
           A+V KVK+ +TLRR+  +  +  E   + ++ L  K+ +LF     A L  TY+D+D DV
Sbjct: 1   AIVIKVKYEETLRRF--NARVINEKLDLNMDGLSDKIFQLFNIARDAELILTYVDEDGDV 58

Query: 293 VTLGDDRDLVDACLVQCLNPLRLEVQVLESKSNGSDRAHQPA 418
           VTL DD DL D  + Q LNPLR+ V++     N ++R+ +P+
Sbjct: 59  VTLVDDEDLQDV-MRQDLNPLRISVRL-----NAAERSSRPS 94