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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951631
Clone id TST38A01NGRL0011_O18
Library
Length 675
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_O18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGATGTCTCCTCCTCACCAATCAAATCGCTCATTATCTCCACCCCGAGGTAAGTCTTCTT
TTGGCACTGCTCCTTATCACAACTTACCTGCTCCAAAAGGAAGGCCTTTGAGGGGCTCTC
TTTCTCCCGTAAAGCAACAGAAACCCAAACATCCGCATCGTTCTTCTCGGTCTCCATCTC
CGAGGCCACCAAAAAAGGAAGAATCCCCTCGCAGAAATAATCGTCCAGAGCCTGTGCAAA
GAAGAGCCTTATCTCCATCCTTATCTCCCCCGAGGCAACAGCTGAGGTCTTCCAGTTTGT
TGGAGGCTTCTCCTACGAGTAAGAAAAGTCGGAGTAGGAGTCCTCCAACAGCCAGGGAGC
TCACAAGAGAGAGACCAGTGAAGGTTGATCAACGGGATTTTAAGACGTCTGACTCTTCAC
CCCTGAACAGGAAGAGATCTAGATCTTCTTCAAGAGAAAGCACTTTACCTGTTGAAGAAA
GGCAAGTGGCTCCTCTGAAAAAGCCCAGTGTTTCAGATGCTGGACCTGCTGGACCTGCTG
TGGTTAGGCATGCACAGAAATTGGATGAATCTTTATCAAGGTCTTCCAATGATGATCGAG
AGGCAAGCCCTGCTGGAAAAGGGAGGAACATGCATGAAATTGAGAGTGATGGAAATGATG
AGCATGGTCCTACCT
■■Homology search results ■■ -
sp_hit_id Q9PGR3
Definition sp|Q9PGR3|IF2_XYLFA Translation initiation factor IF-2 OS=Xylella fastidiosa
Align length 62
Score (bit) 33.9
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951631|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_O18, 5'
         (675 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PGR3|IF2_XYLFA Translation initiation factor IF-2 OS=Xylell...    34   0.81 
sp|Q0U199|ATG4_PHANO Probable cysteine protease ATG4 OS=Phaeosph...    33   1.4  
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprod...    33   1.8  
sp|Q87EV4|IF2_XYLFT Translation initiation factor IF-2 OS=Xylell...    31   5.2  
sp|Q792G6|GNAS3_RAT Neuroendocrine secretory protein 55 OS=Rattu...    31   6.8  
sp|Q9Z0F1|GNAS3_MOUSE Neuroendocrine secretory protein 55 OS=Mus...    31   6.8  

>sp|Q9PGR3|IF2_XYLFA Translation initiation factor IF-2 OS=Xylella
           fastidiosa GN=infB PE=3 SV=1
          Length = 892

 Score = 33.9 bits (76), Expect = 0.81
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +3

Query: 474 EERQVAPLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIESDG 653
           +   V P+ KP   D   A P  VR A     S+SRS + +  +    K R  H I SD 
Sbjct: 188 DSNSVKPVSKPISEDRTRALPRAVRPAPAARPSVSRSDDRNSNSGVRHKPRGSHVIVSDE 247

Query: 654 ND 659
           +D
Sbjct: 248 DD 249


>sp|Q0U199|ATG4_PHANO Probable cysteine protease ATG4
           OS=Phaeosphaeria nodorum GN=ATG4 PE=3 SV=1
          Length = 467

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 492 PLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRN 629
           PL KP+ SD+     A  +  +  DES  R+S DD+E   A  G +
Sbjct: 40  PLPKPAPSDSSTTATATAQAERNEDESWIRTSIDDKERKEAPNGED 85


>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine
            reproductive and respiratory syndrome virus (strain HB-1)
            GN=rep PE=2 SV=2
          Length = 3963

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
 Frame = +3

Query: 480  RQVAPLKKP-----------SVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGR 626
            R + PL +P            V +A PA   +    + LD  LS SS  + EASP    +
Sbjct: 916  RPMTPLSEPIFLSAPRHKFQQVEEANPATTTLTHQNEPLD--LSASSQTEYEASPLASSQ 973

Query: 627  NMHEIESDGND 659
            NM  +E+ G +
Sbjct: 974  NMSILEAGGQE 984


>sp|Q87EV4|IF2_XYLFT Translation initiation factor IF-2 OS=Xylella
           fastidiosa (strain Temecula1 / ATCC 700964) GN=infB PE=3
           SV=1
          Length = 892

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 474 EERQVAPLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIESDG 653
           +   V P+ KP   +   A P  VR       S+SRS + +       K R  H I SD 
Sbjct: 188 DSNSVKPVSKPISEERTRALPRTVRPTPAARPSVSRSDDRNSNGGVRHKARGSHVIVSDE 247

Query: 654 ND 659
           +D
Sbjct: 248 DD 249


>sp|Q792G6|GNAS3_RAT Neuroendocrine secretory protein 55 OS=Rattus
           norvegicus GN=Gnas PE=2 SV=1
          Length = 256

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
 Frame = +3

Query: 357 ELTRERPVKVDQRDFKT-SDXXXXXXXXXXXXXXXXTLPVEERQVAPLKKPSVSDAGPAG 533
           EL R   ++ DQ D++T +D                T P  E + AP  +P        G
Sbjct: 97  ELARPECLEYDQDDYETETDSETEPESDIQSETEFETEPETEPETAPTTEPETEPEDERG 156

Query: 534 PAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIESDGNDE 662
           P      Q L + L        +ASP        E ES    E
Sbjct: 157 PRGATFNQSLTQRLHALKLQSADASPRRAQPTTQEPESASEGE 199


>sp|Q9Z0F1|GNAS3_MOUSE Neuroendocrine secretory protein 55 OS=Mus
           musculus GN=Gnas PE=2 SV=2
          Length = 257

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
 Frame = +3

Query: 357 ELTRERPVKVDQRDFKT-SDXXXXXXXXXXXXXXXXTLPVEERQVAPLKKPSVSDAGPAG 533
           EL R   ++ DQ D++T +D                T P  E + AP  +P        G
Sbjct: 97  ELARPECLEYDQDDYETETDSETEPESDIESETEIETEPETEPETAPTTEPETEPEDERG 156

Query: 534 PAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIESDGNDE 662
           P      Q L + L        +ASP        E ES    E
Sbjct: 157 PRGATFNQSLTQRLHALKLQSADASPRRAQPTTQEPESASEGE 199
tr_hit_id Q4WKF9
Definition tr|Q4WKF9|Q4WKF9_ASPFU RRNA processing protein, putative OS=Aspergillus fumigatus
Align length 60
Score (bit) 42.0
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951631|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_O18, 5'
         (675 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4WKF9|Q4WKF9_ASPFU RRNA processing protein, putative OS=Aspe...    42   0.035
tr|B0XMJ9|B0XMJ9_ASPFC rRNA processing protein, putative OS=Aspe...    42   0.035
tr|Q84UK9|Q84UK9_ORYSJ Putative uncharacterized protein P0665F09...    41   0.079
tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana G...    37   0.88 
tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis...    37   0.88 
tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putativ...    37   0.88 
tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus OS=Arab...    37   0.88 
tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana GN=...    37   0.88 
tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment) OS=Arab...    37   0.88 
tr|B2D2W3|B2D2W3_PRRSV Non-structural protein 2 (Fragment) OS=Po...    35   4.3  
tr|B8MIM5|B8MIM5_9EURO WW domain protein, putative OS=Talaromyce...    35   4.3  
tr|A7Z652|A7Z652_BACA2 RecQ OS=Bacillus amyloliquefaciens (strai...    35   4.4  
tr|A6QP77|A6QP77_BOVIN TCOF1 protein (Fragment) OS=Bos taurus GN...    34   7.4  
tr|Q112H4|Q112H4_TRIEI GTP-binding protein, HSR1-related OS=Tric...    34   7.4  
tr|B1PMZ9|B1PMZ9_PRRSV Non-structural protein 2 (Fragment) OS=Po...    34   9.6  
tr|B0WQL9|B0WQL9_CULQU Putative uncharacterized protein OS=Culex...    34   9.6  

>tr|Q4WKF9|Q4WKF9_ASPFU RRNA processing protein, putative
           OS=Aspergillus fumigatus GN=AFUA_1G02610 PE=4 SV=2
          Length = 325

 Score = 42.0 bits (97), Expect = 0.035
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 492 PLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIES--DGNDEH 665
           P KKP+ + +GP      R  QKLDE+  R+++D    +P  K R  H   S  DGND+H
Sbjct: 252 PKKKPAETASGPKQEK--RKEQKLDEAPDRTNDDGESGAPKPKRRRRHHKSSKGDGNDDH 309


>tr|B0XMJ9|B0XMJ9_ASPFC rRNA processing protein, putative
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_002990 PE=4 SV=1
          Length = 325

 Score = 42.0 bits (97), Expect = 0.035
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 492 PLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRNMHEIES--DGNDEH 665
           P KKP+ + +GP      R  QKLDE+  R+++D    +P  K R  H   S  DGND+H
Sbjct: 252 PKKKPAETASGPKQEK--RKEQKLDEAPDRTNDDGESGAPKPKRRRRHHKSSKGDGNDDH 309


>tr|Q84UK9|Q84UK9_ORYSJ Putative uncharacterized protein
           P0665F09.139 (Putative uncharacterized protein
           P0571B09.125) OS=Oryza sativa subsp. japonica
           GN=P0665F09.139 PE=4 SV=1
          Length = 281

 Score = 40.8 bits (94), Expect = 0.079
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +3

Query: 492 PLKKPSVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGRNMH 635
           PL    V D+ P G  VV  +  L E+ S ++N DREASPA + R MH
Sbjct: 110 PLSLVIVDDSTPLGLVVVDDSAPLAENTSPAANHDREASPAPRERRMH 157


>tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana
           GN=F22L4.6 PE=4 SV=1
          Length = 1284

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 638 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 691

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 692 HEKLAIVESTSRQQGESTLTSTEIV 716


>tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis
           thaliana GN=ANGUSTIFOLIA PE=2 SV=1
          Length = 636

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIV 386


>tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At1g01510) OS=Arabidopsis
           thaliana GN=At1g01510 PE=2 SV=1
          Length = 636

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIV 386


>tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 627

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 299 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 352

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 353 HEKLAIVESTSRQQGESTLTSTEIV 377


>tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana
           GN=At1g01510 PE=4 SV=1
          Length = 636

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIV 386


>tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 641

 Score = 37.4 bits (85), Expect = 0.88
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = -1

Query: 285 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 106
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 313 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 366

Query: 105 AFLLEQVSCDKEQCQKKTYLGVEIM 31
              L  V     Q  + T    EI+
Sbjct: 367 HEKLAIVESTSRQQGESTLTSTEIV 391


>tr|B2D2W3|B2D2W3_PRRSV Non-structural protein 2 (Fragment)
           OS=Porcine reproductive and respiratory syndrome virus
           GN=Nsp2 PE=4 SV=1
          Length = 979

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
 Frame = +3

Query: 480 RQVAPLKKP-----------SVSDAGPAGPAVVRHAQKLDESLSRSSNDDREASPAGKGR 626
           R VAPL +P            V +A PA   +    + LD  LS SS  + EASP    +
Sbjct: 532 RPVAPLSEPIFLSAPRHKFQQVEEANPASTTLTHQDEPLD--LSASSQTEYEASPLALSQ 589

Query: 627 NMHEIESDGND 659
           NM  +E+ G +
Sbjct: 590 NMGILEAGGQE 600