DK951653 |
Clone id |
TST38A01NGRL0011_P16 |
Library |
TST38 |
Length |
665 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_P16. 5' end sequence. |
Accession |
DK951653 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL128Contig1 |
Sequence |
CTAATCCCCAGCCTTCCTGCGTGTTTGCAAGCTATGGAAGGTGTAGTGAGCGTGAGGGCG GCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCGTCGTCTTCGCGCTCG TTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAGGGATGCAACACATCT AGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAGATCACTCAAAACCCT ACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCAGTGCCAGCCATAGCT GCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGATTTTAATCTCACCCTC CCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGACAACATATGGTTTAAG CCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCAGAAGCTTATGAGTGTG CGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAGGCGATCCTCAAGGCC GCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAGGGAGACGGCAGCAAAGCTT GATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGAGCTTGCAGAAGCTATTGCA AACCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
112 |
Score (bit) |
127.0 |
E-value |
5.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951653|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_P16, 5' (665 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 127 5e-29 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 72 3e-12 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 71 4e-12 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 67 6e-11 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 67 1e-10 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 65 3e-10 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 65 4e-10 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 64 5e-10 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 64 5e-10 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 63 2e-09 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 61 6e-09 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 60 8e-09 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 57 7e-08 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 57 7e-08 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 49 2e-05 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 47 1e-04 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 40 0.008 sp|Q48329|VATE_HALVO V-type ATP synthase subunit E OS=Halobacter... 39 0.025 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 39 0.025 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 39 0.032 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 38 0.042 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 38 0.042 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 38 0.042 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 38 0.042 sp|Q9QXS1|PLEC1_MOUSE Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2 37 0.12
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 127 bits (319), Expect = 5e-29 Identities = 61/112 (54%), Positives = 85/112 (75%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIAN 663 L+EQA A+++AARAE +A LNKMK+ET +++AKL E R++IE EL EA+ + Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEALGS 191
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 72.0 bits (175), Expect = 3e-12 Identities = 36/109 (33%), Positives = 67/109 (61%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEA 654 L + E L AR + A++ +++ + + +++++ EK + EA Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKDAQSIVSEDIKKAQMNAEKLITEA 121
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 71.2 bits (173), Expect = 4e-12 Identities = 39/109 (35%), Positives = 64/109 (58%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEA 654 L + E L AR ++ ++E + +++++ EK +AEA Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKEAQNIVSEDIKKAQLNAEKLIAEA 121
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 67.4 bits (163), Expect = 6e-11 Identities = 34/108 (31%), Positives = 62/108 (57%) Frame = +1
Query: 337 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 516 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 517 QAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEAIA 660 Q E L R E A + + + E A++ +++ ++ EL +A A Sbjct: 82 QYEQELAYTRREAQAIIEEARAEAQKIATAEIAAAQQALQAELMKAQA 129
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 66.6 bits (161), Expect = 1e-10 Identities = 35/109 (32%), Positives = 65/109 (59%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEA 654 + +Q E L R E ++ ++E + +++++++ E + EA Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKEAQDIVALEIKQAQKDTELLVNEA 126
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 65.1 bits (157), Expect = 3e-10 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 508 LQEQAEAILKAAR-------AETTAELNKMKRETAAKLDAKLQESRERIEKEL 645 L Q E L A R AE E ++ + A+ + Q RE+ ++E+ Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTEAGRIAAQQLAEAQREAQAQREQAQQEI 128
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 64.7 bits (156), Expect = 4e-10 Identities = 32/109 (29%), Positives = 61/109 (55%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FDF+ TLP++ + L+LM+ L+ +++KP+ K++D+R E I+ + + Sbjct: 18 EGGLFDFDATLPVMMVQLLVLMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAE 77
Query: 508 LQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQESRERIEKELAEA 654 L Q E + AR + N + E + KL+E++++ + ELA A Sbjct: 78 LTTQYETKITDARQNASKLTNTTRSEIQRFVSEKLEEAQKKADSELASA 126
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 64.3 bits (155), Expect = 5e-10 Identities = 35/111 (31%), Positives = 66/111 (59%), Gaps = 4/111 (3%) Frame = +1
Query: 331 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 510 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 511 QEQAEAILKAARAETTAELNKMKRETAAKLDAKL----QESRERIEKELAE 651 + E ++ ++ E+ ++ +K +T + +L +RE I K + E Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKTEHDIVNELIQTQNSTREFISKSIKE 125
>sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=1 Length = 163
Score = 64.3 bits (155), Expect = 5e-10 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 507 +G +FD + TLP++A +FLLL + L+ +KP+ K +D R+E +R + ++ + +K Sbjct: 16 EGGLFDLDATLPLMAIQFLLLALILNATLYKPLGKAIDGRNEYVRNNQLEAQERLSKAEK 75
Query: 508 LQEQAEAILKAAR-------AETTAELNKMKRETAAKLDAKLQESRER----IEKELAEA 654 L E E L AR A+ AE K+ E A + Q RE+ IE++ +A Sbjct: 76 LAEAYEQELAGARRQAQTIIADAQAEAQKIAAEKVAAAQKEAQAQREQAAGEIEQQKQQA 135
Query: 655 IAN 663 +A+ Sbjct: 136 LAS 138
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 62.8 bits (151), Expect = 2e-09 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 22/128 (17%) Frame = +1
Query: 328 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLM----------- 474 +G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSLTAASAALSKAND 77
Query: 475 -----------SVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRETAAKLDAKLQES 621 S + D IK Q+ A+ I+ + E + +++ T +L+ + +++ Sbjct: 78 LTKRYEQDLAESRKKAQDIIKNAQQDAQNIVSSKIKEAQKDADQLMSNTYDQLNIQKEQA 137
Query: 622 RERIEKEL 645 + +EK++ Sbjct: 138 LQNLEKQV 145
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
140 |
Score (bit) |
176.0 |
E-value |
2.0e-42 |
Report |
|