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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951665
Clone id TST38A01NGRL0012_A04
Library
Length 653
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_A04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTGGAGTTTAGACCGCCATAGCCAAATCCTTCATTGGAGCAAACACACTCTACGTGTTC
AGAGAAGTGGGTCAAATCGCCCTTTCGCAGTTCATATTTAGCTCCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTGCGCCTGCACATATCCCTATTTCTGATGGCACTTTGTGCTTCGC
CTGTGGGAATTTATCTCTCCTCTTGCTCCGGATCGTCTGCCTCTGCTCAATTTCGAGCCT
CCCAGCTCCAATGCCTAGCTTCCAAATTTCAATGGGATCCCCTCAGGGTTGCACACTTCA
GGCTTCTTTGCGGGAATAACCTCTTACCAGCGAACTCATGCAGAAGAAGCGCCATTTTCA
GCTCCCCTCTTGCAAGGCCTCGAATGCTACATGTAGTGTCCTCACATGAGCGAGGCTCAG
AAACAGCGGAGGAGAAACCGTGCATGGAGGCAAAGCAGCAGAAAACTGTGCTGGAAAGGG
TTACAGAGGCGGCTCTGGCATGCTTTGATATTGTCAAGAAGCCTGCCGTTGTAGCCCTTG
TTGTTGGCTTGTTACTCACACAGATTCCAGATGCATGGGCAGCATCAGGGGGGATGATGG
GCGGCCGAGCATTTTCCTCGGGTGGCAGCCGATCATCTGGGGGCTATGCAGGC
■■Homology search results ■■ -
sp_hit_id O08856
Definition sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus musculus
Align length 45
Score (bit) 33.9
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951665|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A04, 5'
         (653 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=M...    34   0.77 
sp|Q5RGJ8|GNPTA_DANRE N-acetylglucosamine-1-phosphotransferase s...    32   2.9  
sp|Q8N8S7|ENAH_HUMAN Protein enabled homolog OS=Homo sapiens GN=...    32   3.8  
sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 ...    31   6.5  
sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A P...    31   6.5  
sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopu...    31   6.5  
sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xen...    31   6.5  
sp|P21506|ZNF10_HUMAN Zinc finger protein 10 OS=Homo sapiens GN=...    30   8.5  
sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE...    30   8.5  
sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 ...    30   8.5  
sp|A4JLS0|KHSE_BURVG Homoserine kinase OS=Burkholderia vietnamie...    30   8.5  
sp|Q0BAN2|KHSE_BURCM Homoserine kinase OS=Burkholderia ambifaria...    30   8.5  
sp|Q9P2D6|F135A_HUMAN Protein FAM135A OS=Homo sapiens GN=FAM135A...    30   8.5  
sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus n...    30   8.5  

>sp|O08856|ELL_MOUSE RNA polymerase II elongation factor ELL OS=Mus
           musculus GN=Ell PE=2 SV=1
          Length = 602

 Score = 33.9 bits (76), Expect = 0.77
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 643 PPDDRLPPEENARP--PIIPPDAAHASGICVSNKPTTRATTAGFL 515
           PP++R P  +   P  P +PPDA   +G C  N+PT+ + T  +L
Sbjct: 448 PPEERPPAPQPDAPTAPALPPDAPGLNGAC-DNEPTSSSETPDYL 491


>sp|Q5RGJ8|GNPTA_DANRE N-acetylglucosamine-1-phosphotransferase
           subunits alpha/beta OS=Danio rerio GN=gnptab PE=2 SV=1
          Length = 1219

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = +2

Query: 458 AENCAGKGYRGGSGML*YCQEACRCSPCCWLVTHTDSRCMGSIRGDDGRPSIFLGWQP 631
           AE C G   + G     YC +AC  S C W        C GS R      S+  G QP
Sbjct: 444 AEGCPGSWIKDG-----YCDKACNNSACDW----DGGDCQGSSRFGGAGGSVIGGGQP 492


>sp|Q8N8S7|ENAH_HUMAN Protein enabled homolog OS=Homo sapiens
           GN=ENAH PE=1 SV=2
          Length = 591

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = -3

Query: 498 PEPPL*PFPAQFSAALPPCTVSPP 427
           P PPL P PAQ S ALPP    PP
Sbjct: 315 PPPPLPPGPAQASVALPPPPGPPP 338


>sp|O94856|NFASC_HUMAN Neurofascin OS=Homo sapiens GN=NFASC PE=1 SV=4
          Length = 1347

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 643  PPDDRLPPEENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLSST 467
            PP++  P    A PP +PP    A+G   S   T  A T    T+      A  T+++T
Sbjct: 1026 PPNEATP---TAAPPTLPPTTVGATGAVSSTDATAIAATTEATTVPIIPTVAPTTIATT 1081


>sp|Q6P444|FA54A_HUMAN Protein FAM54A OS=Homo sapiens GN=FAM54A PE=2
           SV=2
          Length = 385

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 643 PPDDRLPPE-ENARPPIIPPDAAHASGICVSNKPTT 539
           PP   LPP+  + +PP  PP    ++ IC S+ P T
Sbjct: 209 PPPPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPAT 244


>sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopus
           tropicalis GN=cblb PE=2 SV=1
          Length = 982

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 652 PA*PPDDRLPPEENARPPIIPPDA 581
           PA PP  R PP    RPP IPPD+
Sbjct: 555 PAPPPPLREPPPPPERPPPIPPDS 578


>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B
           OS=Xenopus laevis GN=cblb-B PE=2 SV=1
          Length = 764

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 652 PA*PPDDRLPPEENARPPIIPPDA 581
           PA PP  R PP    RPP IPPD+
Sbjct: 557 PAPPPPLREPPPPPERPPPIPPDS 580


>sp|P21506|ZNF10_HUMAN Zinc finger protein 10 OS=Homo sapiens
           GN=ZNF10 PE=1 SV=3
          Length = 573

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +3

Query: 267 FQWDPLRVAHFRLLCGNNLLPANSCRRSAIFSSPLARPRMLHVVSSHERGSETAEEKPCM 446
           F W    V H R   G+ L   N C +S + SS L R +  H       G +  E   C 
Sbjct: 330 FSWFSHLVTHQRTHTGDKLYTCNQCGKSFVHSSRLIRHQRTHT------GEKPYECPECG 383

Query: 447 EAKQQKTVL 473
           ++ +Q T L
Sbjct: 384 KSFRQSTHL 392


>sp|P97685|NFASC_RAT Neurofascin OS=Rattus norvegicus GN=Nfasc PE=1
            SV=2
          Length = 1240

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 643  PPDDRLPPEENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLSSTV 464
            PP++  P    A PP +PP     +G+  S   T  A T+   T+         T+++T+
Sbjct: 919  PPNEATP---TAAPPTLPPTTVGTTGLVSSTDATALAATSEATTVPIIPTVVPTTVATTI 975


>sp|Q810U3|NFASC_MOUSE Neurofascin OS=Mus musculus GN=Nfasc PE=1 SV=1
          Length = 1240

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 643  PPDDRLPPEENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLSSTV 464
            PP++  P    A PP +PP     +G+  S   T  A T+   T+         T+++T+
Sbjct: 919  PPNEATP---TAAPPTLPPTTVGTTGLVSSTDATALAATSEATTVPIIPTVVPTTVATTI 975
tr_hit_id Q89EC6
Definition tr|Q89EC6|Q89EC6_BRAJA Transcriptional regulatory protein OS=Bradyrhizobium japonicum
Align length 26
Score (bit) 35.4
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951665|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A04, 5'
         (653 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q89EC6|Q89EC6_BRAJA Transcriptional regulatory protein OS=Bra...    35   3.1  
tr|B6NV12|B6NV12_BRAFL Putative uncharacterized protein (Fragmen...    35   3.1  
tr|Q21BF0|Q21BF0_RHOPB Putative uncharacterized protein OS=Rhodo...    35   5.2  
tr|Q2QRG0|Q2QRG0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   5.2  
tr|B4JK60|B4JK60_DROGR GH12110 OS=Drosophila grimshawi GN=GH1211...    35   5.2  
tr|Q4WUN8|Q4WUN8_ASPFU Neutral amino acid permease, putative OS=...    35   5.2  
tr|A1DES3|A1DES3_NEOFI Amino acid transporter, putative OS=Neosa...    34   6.8  
tr|Q3TXY9|Q3TXY9_MOUSE Putative uncharacterized protein OS=Mus m...    34   8.9  
tr|B3L0Y3|B3L0Y3_PLAKH SICA-like antigen OS=Plasmodium knowlesi ...    34   8.9  
tr|A5K3Y8|A5K3Y8_PLAVI Putative uncharacterized protein OS=Plasm...    34   8.9  
tr|A0E8C7|A0E8C7_PARTE Chromosome undetermined scaffold_82, whol...    34   8.9  

>tr|Q89EC6|Q89EC6_BRAJA Transcriptional regulatory protein
           OS=Bradyrhizobium japonicum GN=bll7161 PE=4 SV=1
          Length = 246

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 640 PDDRLPPEENARPPIIPPDAAHASGI 563
           P DR PP + A PP +PP+A+  SG+
Sbjct: 211 PTDRRPPAKGAEPPPVPPEASSGSGV 236


>tr|B6NV12|B6NV12_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_237047 PE=4 SV=1
          Length = 193

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
 Frame = +2

Query: 530 CSPCCWLVTHT----------DSRCMGSIRGDDGRPSIFLGWQPIIWGLCR 652
           C P CW  +H            S C G+ R   G P+  LG QP  WG  R
Sbjct: 66  CQPRCWGASHAAGVPAALLGCQSCCWGASRAAAGVPAALLGCQPCCWGASR 116


>tr|Q21BF0|Q21BF0_RHOPB Putative uncharacterized protein
           OS=Rhodopseudomonas palustris (strain BisB18)
           GN=RPC_0714 PE=4 SV=1
          Length = 222

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 26/112 (23%), Positives = 47/112 (41%)
 Frame = -2

Query: 640 PDDRLPPEENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLSSTVF 461
           P +R+PP  N+  P  PP AA +     +  P   +  A   +++  A  AS  L+ T+ 
Sbjct: 95  PPERMPPPPNSTVPPAPPVAAPSR---AAPSPPAPSPAAPSPSVAAPAAPASSGLTPTMV 151

Query: 460 CCFASMHGFSSAVSEPRSCEDTTCSIRGLARGELKMALLLHEFAGKRLFPQR 305
              ++    ++ V +  +  D  C  +G  +G+          + K L P R
Sbjct: 152 TGRSTCRSGANGVPDCNAAADALCQGKGYKQGKSLATDSAESCSAKMLIPGR 203


>tr|Q2QRG0|Q2QRG0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os12g27690 PE=4 SV=1
          Length = 346

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
 Frame = -2

Query: 643 PPDDRLPPEENARPPI-----------IPPDAAHASGICVSNKPTTRATTAGFLTISKHA 497
           PP    PP E A PP+               AA A+G     +    + TAG    S   
Sbjct: 163 PPSRPHPPPEQAPPPLSRSPGQGEAAAAAATAAKAAGCGTMPRWPGSSATAG----SHRC 218

Query: 496 RAASVTLSSTVFCCFASMHGFSSAVSEPRSCEDTTCSIRGLARGE 362
           RA+    SS+ F   ASM  F      P +    +CS  GLA GE
Sbjct: 219 RASPCRTSSSGFPSVASMSTFLPPA--PSTSMSASCSSTGLAHGE 261


>tr|B4JK60|B4JK60_DROGR GH12110 OS=Drosophila grimshawi GN=GH12110
           PE=4 SV=1
          Length = 1600

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = -2

Query: 652 PA*PPDDRLPPEENARPPIIPPDAAH----ASGICVSNKPTTRATTAGFLTISKHARAAS 485
           P+ PP   LP   NA P +    +A     A+   VS   TT ++++  +  +  A AAS
Sbjct: 63  PSLPP---LPLPLNALPSVTVTTSAASTSAAAAAAVSTSTTTSSSSSAAVAAAAAAAAAS 119

Query: 484 VTLSSTVFCCFASMHGFSSAVSEPRSCEDTTCSIRGLARGELKMA 350
            T ++      A+    ++  S P SC  +T +I   A  +   A
Sbjct: 120 ATAAAAATTVTAAATSAAATSSTPSSCSSSTITITATATAKAATA 164


>tr|Q4WUN8|Q4WUN8_ASPFU Neutral amino acid permease, putative
           OS=Aspergillus fumigatus GN=AFUA_5G09120 PE=4 SV=1
          Length = 476

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -2

Query: 547 PTTRATTAGFLTISKHARAASVTLSSTVFCCFASMHGFSSAVSEPRSCED----TTCSIR 380
           P T     GF  I     A  +T S+T+FC  A+   F   +SE R   D       S+ 
Sbjct: 224 PQTGPFDLGFRAIGNPTFAVGITASATIFCSSAATSAFLPVISEMRKPRDYPKAVYLSMS 283

Query: 379 GLARGELKMALLLHEFAGK 323
            +    L  +L+++ + GK
Sbjct: 284 FVTTSYLAFSLVIYAWCGK 302


>tr|A1DES3|A1DES3_NEOFI Amino acid transporter, putative
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_078200 PE=4 SV=1
          Length = 476

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -2

Query: 547 PTTRATTAGFLTISKHARAASVTLSSTVFCCFASMHGFSSAVSEPRSCED----TTCSIR 380
           P T     GF  I     A  +T S+T+FC  A+   F   +SE R   D       S+ 
Sbjct: 224 PQTGPFDLGFRAIGHPTFAVGITASATIFCSSAATSAFLPVISEMRKPRDYPKAVYLSMS 283

Query: 379 GLARGELKMALLLHEFAGK 323
            +    L  +L+++ + GK
Sbjct: 284 FVTTSYLAFSLVIYAWCGK 302


>tr|Q3TXY9|Q3TXY9_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Ell PE=2 SV=1
          Length = 602

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 643 PPDDRLPPEENARP--PIIPPDAAHASGICVSNKPTTRATTAGFL 515
           PP++R P  +   P  P +PPDA   +G C  N+PT+ + T  +L
Sbjct: 448 PPEERPPAPQPDAPTAPALPPDAPGLNGAC-DNEPTSSSETPDYL 491


>tr|B3L0Y3|B3L0Y3_PLAKH SICA-like antigen OS=Plasmodium knowlesi
           (strain H) GN=PKH_050021 PE=4 SV=1
          Length = 1014

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 24/86 (27%), Positives = 35/86 (40%)
 Frame = -2

Query: 652 PA*PPDDRLPPEENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLS 473
           P  PP    PP+   +PP  PP     SG   +  P+T +  +  +T S    A S T  
Sbjct: 547 PLPPPPPPPPPQPQPQPPRPPPPQQQQSGQQSNQSPSTSSALSTPVTTSTQTPAISPTTP 606

Query: 472 STVFCCFASMHGFSSAVSEPRSCEDT 395
           S      A+M   + + +EP     T
Sbjct: 607 S------ATMTSLTPSPTEPTESSST 626


>tr|A5K3Y8|A5K3Y8_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_118380 PE=3 SV=1
          Length = 988

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 616 ENARPPIIPPDAAHASGICVSNKPTTRATTAGFLTISKHARAASVTLSSTV 464
           ++ RPP  PPD  HA GI  S   +   TT+   T+SK    +  T+S  +
Sbjct: 369 QHNRPPGTPPDGGHAEGISKSKGKSKTKTTSVGETLSKDILLSDDTISDAL 419