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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951669
Clone id TST38A01NGRL0012_A08
Library
Length 658
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_A08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TGTAGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAAGCAATGGCGACCATGTCTGCGTCTC
TAGCAGTGAGCGCCCCGGGATGTGCCCCAGCAGAGCTGAGCCTCTCACAGAAGAGCTTCT
CGGGCCTCAAGGCCTCCACCATCGTCGCGCCCAAGTGTGGCAATCCCCTCGCCGTTTCCA
ATGGCAGCCGTGTCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTCGAGA
CTCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGG
TGCGACAGAACTTTACTCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGC
ACTTCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGT
TTGGCTGCACCGACTCCGCCGCCGTGCTGCGCGAGATCACGGAGTGCGCCAAGGAGTACC
CCAAGGCATTCATCCGGGTGCTCGGCTTCGATGCCAAGCGGCAAGTTCAGGTTGCTGGCT
TCCTTGTCCAGAAGCCCGGCCAGTGAAGTAAATTTTTTCTGCTGCCTCTGAATTTCCCCA
GCCCATATATCTAATTTGTTGTGAGCTATCATGAAAGCCTGTCTGTATAGAAACCTGC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 186
Score (bit) 188.0
E-value 2.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951669|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A08, 5'
         (658 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   188   2e-47
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   187   4e-47
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   184   3e-46
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   183   6e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   183   8e-46
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   182   1e-45
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   180   5e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   179   9e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   179   1e-44
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   179   1e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   174   4e-43
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...   173   6e-43

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  188 bits (477), Expect = 2e-47
 Identities = 96/186 (51%), Positives = 121/186 (65%), Gaps = 5/186 (2%)
 Frame = +3

Query: 15  LLSSGSQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SN 182
           + S  S A+AT++ + +  A   AP         F+GLK++    V  K  N  +   SN
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP---------FTGLKSNVAFPVTKKANNDFSSLPSN 51

Query: 183 GSRVSAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYRE 359
           G RV  M VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYRE
Sbjct: 52  GGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYRE 111

Query: 360 HFHGSGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAG 539
           H H  GYYDGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQVQ   
Sbjct: 112 HHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCIS 171

Query: 540 FLVQKP 557
           F+V KP
Sbjct: 172 FIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  187 bits (475), Expect = 4e-47
 Identities = 97/179 (54%), Positives = 120/179 (67%), Gaps = 9/179 (5%)
 Frame = +3

Query: 48  MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 203
           M+ S+  SA   A +  S +Q S    F+ LK+++   V  K  N +    SNG RV  M
Sbjct: 1   MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 204 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 380
            VW P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 381 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  184 bits (468), Expect = 3e-46
 Identities = 91/175 (52%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
 Frame = +3

Query: 48  MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 215
           M++S+  SA   A    +     F+GLK+S       K  N +    SNG RV+ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 216 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 392
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 393 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  183 bits (465), Expect = 6e-46
 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 5/174 (2%)
 Frame = +3

Query: 51  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 218
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 219 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 395
              KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 396 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  183 bits (464), Expect = 8e-46
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +3

Query: 51  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 218
           S+  + +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 219 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 395
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 396 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  182 bits (463), Expect = 1e-45
 Identities = 92/188 (48%), Positives = 124/188 (65%), Gaps = 8/188 (4%)
 Frame = +3

Query: 18  LSSGSQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKA-----STIVAPKCG---NPLA 173
           ++S   A+++ +A  AV+AP        +S  +F+GLK+     S+      G       
Sbjct: 1   MASSIMALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKT 58

Query: 174 VSNGSRVSAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVY 353
            SNGSRV  M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++  + PC+EF+  G + 
Sbjct: 59  TSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIK 118

Query: 354 REHFHGSGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQV 533
           R + +  GYYDGRYWVMWKLPMFGCT+++ VL E+ ECAK YP AFIRV+GFD  RQVQ 
Sbjct: 119 RVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQC 178

Query: 534 AGFLVQKP 557
             F+V KP
Sbjct: 179 ISFIVHKP 186


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  182 bits (462), Expect = 1e-45
 Identities = 96/178 (53%), Positives = 115/178 (64%), Gaps = 5/178 (2%)
 Frame = +3

Query: 39  MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 206
           MA++ AS AV  P  A A  +          +GLKA              +NGSRVS M 
Sbjct: 1   MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 207 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 386
           VW+PY+N KFETLSYLP LS + +AKQ+DY+++  + PCIEFD  G+V RE     GYYD
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 387 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQVQVAGFLVQKP 557
           GRYW MWKLPMFGCTDSA+VLREI EC K Y  K +IR LGFD  RQVQ A F+V +P
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  182 bits (462), Expect = 1e-45
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +3

Query: 51  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 218
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K    +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 219 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 395
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 396 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  182 bits (462), Expect = 1e-45
 Identities = 92/174 (52%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +3

Query: 51  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 218
           S+ L+ +A   +PA+ ++    F+GLK+S+   V  K  N +   VSNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61

Query: 219 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 395
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 396 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  180 bits (457), Expect = 5e-45
 Identities = 93/180 (51%), Positives = 121/180 (67%), Gaps = 4/180 (2%)
 Frame = +3

Query: 30  SQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV-SNGSRVSA 200
           + +M +      VSA   APA+  +    F+GLK+S+   V  K  +  ++ SNG RV  
Sbjct: 2   ASSMISSGTVATVSADRPAPAQARMVAP-FNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query: 201 MLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSG 377
           M VW P   KKFETLSYLP LSSE +AK+VDY++R+N+ PC+EF+   G VYRE+    G
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query: 378 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           YYDGRYW MWKLPMFGCTDS+ VL+E+ E  K YP++FIR++GFD  RQVQ   F+  KP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 175
Score (bit) 304.0
E-value 4.0e-81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951669|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A08, 5'
         (658 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   304   4e-81
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   212   2e-53
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   210   5e-53
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   209   2e-52
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   208   2e-52
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   208   3e-52
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   207   6e-52
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   194   4e-48
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   194   5e-48
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   193   7e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   193   7e-48
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   187   6e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   183   9e-45
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   183   9e-45
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  304 bits (778), Expect = 4e-81
 Identities = 145/175 (82%), Positives = 160/175 (91%)
 Frame = +3

Query: 39  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 218
           MATM A++AVSAP CA A  SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 219 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 398
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 399 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 563
           +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  212 bits (539), Expect = 2e-53
 Identities = 103/177 (58%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
 Frame = +3

Query: 36  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 215
           A A +S S+  +A   A    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 216 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 386
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 387 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  210 bits (535), Expect = 5e-53
 Identities = 102/177 (57%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
 Frame = +3

Query: 36  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 215
           A A +S S+  +A   +    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 216 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 386
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 387 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  209 bits (531), Expect = 2e-52
 Identities = 105/186 (56%), Positives = 134/186 (72%), Gaps = 6/186 (3%)
 Frame = +3

Query: 18  LSSGSQAMATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGS 188
           ++  S  ++T+ A +A+  A  C  AP+E S S K+FSGLK++T+ + K     +V NGS
Sbjct: 29  VAMASAVVSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGS 87

Query: 189 RVSAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFH 368
           RV  M VW P    KFET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F 
Sbjct: 88  RVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFS 147

Query: 369 G---SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAG 539
           G   SGYYDGRYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ G
Sbjct: 148 GAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICG 207

Query: 540 FLVQKP 557
           FLV +P
Sbjct: 208 FLVSRP 213


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  208 bits (530), Expect = 2e-52
 Identities = 100/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
 Frame = +3

Query: 57  SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 236
           SL  +A   A +  S + K+FSGLK +T+ + K     AV NGSRV  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 237 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 407
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 408 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  208 bits (529), Expect = 3e-52
 Identities = 100/183 (54%), Positives = 126/183 (68%), Gaps = 3/183 (1%)
 Frame = +3

Query: 18  LSSGSQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 197
           ++S   +      S+ V++   A +  S S K+FSGLK++T+   K     +V NGSRV 
Sbjct: 1   MASAVASTVVAPVSVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQ 60

Query: 198 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG-- 371
            M VW P    KFET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G  
Sbjct: 61  CMQVWNPIGQPKFETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSG 120

Query: 372 -SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLV 548
            SGYYDGRYW MWKLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV
Sbjct: 121 SSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLV 180

Query: 549 QKP 557
            +P
Sbjct: 181 ARP 183


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  207 bits (526), Expect = 6e-52
 Identities = 99/183 (54%), Positives = 128/183 (69%), Gaps = 3/183 (1%)
 Frame = +3

Query: 18  LSSGSQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 197
           ++S   +      SLA ++P     + S S K+FSGLK++T+ + +     +V NGSRV 
Sbjct: 1   MASAVASSVVAPVSLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQ 59

Query: 198 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG-- 371
            M VW P    KFET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G  
Sbjct: 60  CMQVWNPIGQPKFETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAG 119

Query: 372 -SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLV 548
            SGYYDGRYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV
Sbjct: 120 SSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLV 179

Query: 549 QKP 557
            +P
Sbjct: 180 SRP 182


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  196 bits (497), Expect = 1e-48
 Identities = 95/180 (52%), Positives = 119/180 (66%)
 Frame = +3

Query: 18  LSSGSQAMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 197
           ++S   A A ++ +   +A   A    S + K+FSGLK++T+ + K  N  +V NGSRV 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 198 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 377
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 378 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  194 bits (493), Expect = 4e-48
 Identities = 98/181 (54%), Positives = 121/181 (66%), Gaps = 7/181 (3%)
 Frame = +3

Query: 36  AMATMSASLAVSAP---GCAPAELSLSQ----KSFSGLKASTIVAPKCGNPLAVSNGSRV 194
           AMA++ A+  V AP     A + +S S+    K+FSGLK++T+ + K     +V NGSRV
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 195 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 374
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 375 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQK 554
           GYYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVAR 181

Query: 555 P 557
           P
Sbjct: 182 P 182


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  194 bits (492), Expect = 5e-48
 Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 5/178 (2%)
 Frame = +3

Query: 39  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 206
           MA++S+S   +     PA+ SL+   F+GLK++    V  K  N  +   SNG RV  M 
Sbjct: 1   MASISSSAVATVNRSTPAQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 207 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 383
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYY 119

Query: 384 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 557
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177