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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951671
Clone id TST38A01NGRL0012_A10
Library
Length 675
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_A10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTACAGCTCACGCGTTAGTGGAAGTCTTTCAGACTATTGTCGGTCGAACTCGATCACCGC
TACAAGTTTTGCTCAGACAGGGAAACCTGCTCGATGGCAAGAAGACCAACAATCACAGAC
CCTGGGGGCAAGAAACCTCAAGCTATTGAATTGAGTGACATGGCATTGGAAGAGACCTCC
ACTTCATCATCTGAGGTAATTACTAGACTACCAACAGCATCTGCAGAAAAGCCTTGGGAT
ATGCTGCAAATATTAAGCAGATTTCCTGCTATGAATCAAGCCTCAATGACACTTACTGAA
ACTGCGTCTTCGTTTGGACGTGGATTAGCGACCTTGCTTGATGATGTTGCTTCTGGGGCT
ACCTCGAGCACACAGAGAGTTGAGGAGAAAGGGCGCACAACAGTTTCAGTATCATCTTCA
AACATTGACCAGAATAAAAGTTCTGCTTCTTCAACAGCTAGCAGCCTGGATCTGGCCACA
AGGCAAAACCTTGCACTAGAAAGGGCAACAGCTATTCTGAATTCTACAAGCACCACCTTT
ATGGAGTTTGGACAACGCTTATTGGGAACTCCACCTCTTTTATGGCAGGGAATGTTAGAT
CGAGTGCAAACAACATGGAGAGGTTCTATGGATGATATCGGTTGGCTGCAACGATTACCT
GGTTCTGTGGGTGTT
■■Homology search results ■■ -
sp_hit_id A5WWC6
Definition sp|A5WWC6|HSDL1_DANRE Hydroxysteroid dehydrogenase-like protein 1 OS=Danio rerio
Align length 100
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951671|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A10, 5'
         (675 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5WWC6|HSDL1_DANRE Hydroxysteroid dehydrogenase-like protein ...    33   1.4  
sp|Q92Q99|KDSA_RHIME 2-dehydro-3-deoxyphosphooctonate aldolase O...    31   5.3  
sp|Q89KV0|KDSA_BRAJA 2-dehydro-3-deoxyphosphooctonate aldolase O...    31   5.3  
sp|Q6NYK3|SPRE2_DANRE Sprouty-related, EVH1 domain-containing pr...    31   6.9  
sp|A0KPG5|MUTS_AERHH DNA mismatch repair protein mutS OS=Aeromon...    31   6.9  
sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii GN=S...    30   9.0  

>sp|A5WWC6|HSDL1_DANRE Hydroxysteroid dehydrogenase-like protein 1
           OS=Danio rerio GN=hsdl1 PE=2 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = -2

Query: 431 WSMFEDDTETVVRPFSSTL-----CVLEVAPEATSSSKVANPRPNEDAVSVSVIEA*FIA 267
           W++    +E + + ++  L     CV+ ++ + +S S  A    N   V    IEA F  
Sbjct: 69  WAIICGASEAIAKAYAEELARHGICVILISKDLSSVSDTARLISNNYGVEAICIEADFNQ 128

Query: 266 GNLLNICS-ISQGFSADAVGSLVITSDDEVEVSSNAMSLN 150
           G   + C  I    S+  +G LV + D  +E+S N + L+
Sbjct: 129 GP--SACKPIKDAISSKDIGFLVNSFDGTLEISQNFLELS 166


>sp|Q92Q99|KDSA_RHIME 2-dehydro-3-deoxyphosphooctonate aldolase
           OS=Rhizobium meliloti GN=kdsA PE=3 SV=1
          Length = 280

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 232 PWDMLQILSRFPAMNQASMTLTETASSFGRGLATLLDDVAS 354
           PWDM  +L++F      ++ L E  +SFG    TL+ D+ S
Sbjct: 151 PWDMKNVLAKFTESGNPNVLLCERGASFGYN--TLVSDMRS 189


>sp|Q89KV0|KDSA_BRAJA 2-dehydro-3-deoxyphosphooctonate aldolase
           OS=Bradyrhizobium japonicum GN=kdsA PE=3 SV=1
          Length = 282

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 232 PWDMLQILSRFPAMNQASMTLTETASSFGRGLATLLDDV 348
           PWDM  ++++  + N  ++ +TE  +SFG    TL+ D+
Sbjct: 150 PWDMANVVTKITSANNPNVLVTERGASFGYN--TLVSDM 186


>sp|Q6NYK3|SPRE2_DANRE Sprouty-related, EVH1 domain-containing
           protein 2 OS=Danio rerio GN=spred2 PE=2 SV=1
          Length = 413

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +1

Query: 304 ASSFGRGLATLLDDVASGATSSTQRVEEKGR-------TTVSVSSSNIDQNK 438
           A +F RG+   L+D+  G+T+S+  ++ +         TT + SSSN  Q K
Sbjct: 108 ARAFDRGVRKALEDLTEGSTTSSSTLQNEAELGDDDVFTTATDSSSNSSQKK 159


>sp|A0KPG5|MUTS_AERHH DNA mismatch repair protein mutS OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=mutS PE=3 SV=1
          Length = 860

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 337 LDDVASGATSSTQRVEEKGRTTVSVSSSNIDQNK 438
           L D+A+GAT+S  R+EE+ R    +++  +  NK
Sbjct: 447 LRDLANGATASLARIEERERLLTGINTLKVGYNK 480


>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1
            PE=3 SV=2
          Length = 1616

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
 Frame = +1

Query: 235  WDMLQILSRFPAMNQAS----MTLTETASSFGRGLATLLDDVASGATS--------STQR 378
            W +L  L     +NQA       L +  + FGR +  +L+  ++G +S        +TQR
Sbjct: 949  WSLLYFLMPSSKVNQAMPDGFANLEDFQTWFGRPVDKILEKTSNGTSSDVIDENDKTTQR 1008

Query: 379  VEEKGRTTVS 408
            ++E+ R TVS
Sbjct: 1009 MDEETRNTVS 1018
tr_hit_id Q8VY25
Definition tr|Q8VY25|Q8VY25_ARATH Putative uncharacterized protein At2g44970 OS=Arabidopsis thaliana
Align length 154
Score (bit) 48.1
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951671|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_A10, 5'
         (675 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VY25|Q8VY25_ARATH Putative uncharacterized protein At2g4497...    48   5e-04
tr|Q84WV5|Q84WV5_ARATH Putative uncharacterized protein At2g4497...    48   5e-04
tr|O22155|O22155_ARATH Putative uncharacterized protein At2g4497...    45   0.004
tr|A7PKF1|A7PKF1_VITVI Chromosome chr15 scaffold_19, whole genom...    44   0.009
tr|A9TI88|A9TI88_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.027
tr|B8BNV8|B8BNV8_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.080
tr|Q2QYQ2|Q2QYQ2_ORYSJ Os12g0110100 protein OS=Oryza sativa subs...    39   0.30 
tr|A3CEA2|A3CEA2_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.30 
tr|Q2RBI7|Q2RBI7_ORYSJ Os11g0110000 protein OS=Oryza sativa subs...    39   0.39 
tr|B8BLN7|B8BLN7_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.39 
tr|A7PEJ2|A7PEJ2_VITVI Chromosome chr11 scaffold_13, whole genom...    38   0.67 
tr|B6SS63|B6SS63_MAIZE Nucleic acid binding protein OS=Zea mays ...    37   1.5  
tr|A4WBP6|A4WBP6_ENT38 Methyl-accepting chemotaxis sensory trans...    34   7.4  
tr|B1S7T3|B1S7T3_9BIFI Putative uncharacterized protein OS=Bifid...    34   7.4  
tr|A9S6N7|A9S6N7_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   7.4  
tr|A4ITK2|A4ITK2_GEOTN Methyl-accepting chemotaxis protein OS=Ge...    34   9.7  
tr|B4BP80|B4BP80_9BACI Methyl-accepting chemotaxis sensory trans...    34   9.7  

>tr|Q8VY25|Q8VY25_ARATH Putative uncharacterized protein At2g44970
           OS=Arabidopsis thaliana GN=At2g44970 PE=2 SV=1
          Length = 503

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
 Frame = +1

Query: 247 QILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGRTTVSV----- 411
           Q+ +  PA+N+A+  +T+  S  G             +  S   VE  G+ T+S      
Sbjct: 45  QVFNSLPALNEAASYITQATSYLG-------------SCFSDYSVEYGGKDTISHPHELL 91

Query: 412 -SSSNIDQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEF----------GQR 558
            S+S +D N               R + + E +T+  NS S    E             R
Sbjct: 92  RSTSGVDGNSPVSVCISPGE----RFSTSSEASTSDANSPSRESTEILPQATNAIVTSNR 147

Query: 559 LLGTPPLLWQGMLDRVQTTWRGSMDDIGWLQRLP 660
           L      ++QG+++R + T RGS DDIGWLQR P
Sbjct: 148 LNLNGISMFQGLIERARRTVRGSADDIGWLQRAP 181


>tr|Q84WV5|Q84WV5_ARATH Putative uncharacterized protein At2g44970
           OS=Arabidopsis thaliana GN=At2g44970 PE=2 SV=1
          Length = 503

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
 Frame = +1

Query: 247 QILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGRTTVSV----- 411
           Q+ +  PA+N+A+  +T+  S  G             +  S   VE  G+ T+S      
Sbjct: 45  QVFNSLPALNEAASYITQATSYLG-------------SCFSDYSVEYGGKDTISHPHELL 91

Query: 412 -SSSNIDQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEF----------GQR 558
            S+S +D N               R + + E +T+  NS S    E             R
Sbjct: 92  RSTSGVDGNSPVSVCISPGE----RFSTSSEASTSDANSPSRESTEILPQATNAIVTSNR 147

Query: 559 LLGTPPLLWQGMLDRVQTTWRGSMDDIGWLQRLP 660
           L      ++QG+++R + T RGS DDIGWLQR P
Sbjct: 148 LNLNGISMFQGLIERARRTVRGSADDIGWLQRAP 181


>tr|O22155|O22155_ARATH Putative uncharacterized protein At2g44970
           (At2g44970 protein) OS=Arabidopsis thaliana GN=At2g44970
           PE=4 SV=1
          Length = 461

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
 Frame = +1

Query: 247 QILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGRTTVSVSSSNI 426
           Q+ +  PA+N+A+  +T+  S  G         +  G   +     E  R+T     S +
Sbjct: 29  QVFNSLPALNEAASYITQATSYLG--------SLEYGGKDTISHPHELLRST-----SGV 75

Query: 427 DQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEF----------GQRLLGTPP 576
           D N               R + + E +T+  NS S    E             RL     
Sbjct: 76  DGNSPVSVCISPGE----RFSTSSEASTSDANSPSRESTEILPQATNAIVTSNRLNLNGI 131

Query: 577 LLWQGMLDRVQTTWRGSMDDIGWLQRLP 660
            ++QG+++R + T RGS DDIGWLQR P
Sbjct: 132 SMFQGLIERARRTVRGSADDIGWLQRAP 159


>tr|A7PKF1|A7PKF1_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019141001
           PE=4 SV=1
          Length = 480

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 580 LWQGMLDRVQTTWRGSMDDIGWLQRLPG 663
           ++QG++DR + T RGS DDIGW+QR PG
Sbjct: 132 IFQGLIDRARRTVRGSADDIGWIQRAPG 159


>tr|A9TI88|A9TI88_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_145950 PE=4 SV=1
          Length = 365

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +1

Query: 592 MLDRVQTTWRGSMDDIGWLQRLPGSVGV 675
           ++ RVQTT +GS DDIGWL+++PGS+ V
Sbjct: 7   LVTRVQTTLKGSADDIGWLEKIPGSLPV 34


>tr|B8BNV8|B8BNV8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37197 PE=4 SV=1
          Length = 475

 Score = 40.8 bits (94), Expect = 0.080
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
 Frame = +1

Query: 220 SAEKPWDMLQILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGR- 396
           SA++  D    LS  PA+NQA+  L +TAS   + L        SG T+ ++  +E    
Sbjct: 23  SADRTEDSQLFLS-VPALNQAASYLAQTASYLTQCLPV------SGYTAISEEGQELATL 75

Query: 397 ---TTVSVSSSNIDQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEFGQ---- 555
              +TV  SS      +                  + + +   +++T ++  E  +    
Sbjct: 76  PPASTVGGSSFQASSEQ------------------SADSSPGEIDNTGSSSQEITEQMAP 117

Query: 556 -RLLGTPPLLWQGMLDRVQTTWRGSMDDIGWLQR 654
            R+      L+QG+++R + T RGS DDIGWLQ+
Sbjct: 118 LRVFQNGASLFQGLVERARKTVRGSADDIGWLQQ 151


>tr|Q2QYQ2|Q2QYQ2_ORYSJ Os12g0110100 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0110100 PE=2 SV=2
          Length = 484

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
 Frame = +1

Query: 220 SAEKPWDMLQILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGR- 396
           SA++  D    LS  PA+NQA+  L +TAS   + L        SG T+ ++  +E    
Sbjct: 29  SADRTEDSQLFLS-VPALNQAASYLAQTASYLTQCLPV------SGYTAISEEGQELATL 81

Query: 397 ---TTVSVSSSNIDQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEFGQ---- 555
              +TV  SS      +                  + + +   +++T ++  E  +    
Sbjct: 82  PPASTVGGSSFQASSEQ------------------SADSSPGEIDNTGSSSQEITEQMAP 123

Query: 556 -RLLGTPPLLWQGMLDRVQTTWRGSMDDIGWLQR 654
            R+      L+QG+++R + T RGS +DIGWLQ+
Sbjct: 124 LRVFQNGASLFQGLVERARKTVRGSANDIGWLQQ 157


>tr|A3CEA2|A3CEA2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033624 PE=4 SV=1
          Length = 502

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
 Frame = +1

Query: 220 SAEKPWDMLQILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGR- 396
           SA++  D    LS  PA+NQA+  L +TAS   + L        SG T+ ++  +E    
Sbjct: 23  SADRTEDSQLFLS-VPALNQAASYLAQTASYLTQCLPV------SGYTAISEEGQELATL 75

Query: 397 ---TTVSVSSSNIDQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEFGQ---- 555
              +TV  SS      +                  + + +   +++T ++  E  +    
Sbjct: 76  PPASTVGGSSFQASSEQ------------------SADSSPGEIDNTGSSSQEITEQMAP 117

Query: 556 -RLLGTPPLLWQGMLDRVQTTWRGSMDDIGWLQR 654
            R+      L+QG+++R + T RGS +DIGWLQ+
Sbjct: 118 LRVFQNGASLFQGLVERARKTVRGSANDIGWLQQ 151


>tr|Q2RBI7|Q2RBI7_ORYSJ Os11g0110000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0110000 PE=4 SV=1
          Length = 818

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
 Frame = +1

Query: 247 QILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGRTTVSVSSSNI 426
           Q+    PA+NQA+  L +TAS                    TQ +   G T +S     +
Sbjct: 381 QLFLSVPALNQAASYLAQTASYL------------------TQCLPVSGYTAISDEGQEL 422

Query: 427 DQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEFGQ-----RLLGTPPLLWQG 591
                              Q+   + +   +++T ++  E  +     R+      L+QG
Sbjct: 423 ATLPPASTAGGSSFQASSEQSA--DSSPGEIDNTGSSSQEITEQMAPLRVFQNGASLFQG 480

Query: 592 MLDRVQTTWRGSMDDIGWLQR 654
           +++R + T RGS DDIGWLQ+
Sbjct: 481 LVERARKTVRGSADDIGWLQQ 501


>tr|B8BLN7|B8BLN7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36901 PE=4 SV=1
          Length = 714

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
 Frame = +1

Query: 247 QILSRFPAMNQASMTLTETASSFGRGLATLLDDVASGATSSTQRVEEKGRTTVSVSSSNI 426
           Q+    PA+NQA+  L +TAS                    TQ +   G T +S     +
Sbjct: 267 QLFLSVPALNQAASYLAQTASYL------------------TQCLPVSGYTAISDEGQEL 308

Query: 427 DQNKXXXXXXXXXXXXXXRQNLALERATAILNSTSTTFMEFGQ-----RLLGTPPLLWQG 591
                              Q+   + +   +++T ++  E  +     R+      L+QG
Sbjct: 309 ATLPPASTAGGSSFQASSEQSA--DSSPGEIDNTGSSSQEITEQMAPLRVFQNGASLFQG 366

Query: 592 MLDRVQTTWRGSMDDIGWLQR 654
           +++R + T RGS DDIGWLQ+
Sbjct: 367 LVERARKTVRGSADDIGWLQQ 387