DK951680 |
Clone id |
TST38A01NGRL0012_A19 |
Library |
TST38 |
Length |
641 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_A19. 5' end sequence. |
Accession |
DK951680 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL378Contig1 |
Sequence |
GACACAAAGTCCTCGGAGTACACTATATTTTTGGGGCAATCTTCTGACGGGGAGCCCCGA GCCCGACAGCCACAGCCATGGCTGCAGCAGTCAAGCTCACTTCCTCTTCTGTGGCTTCTT CCCCCACCATGCAGCCCCTGTATCTGCGAACAGGTTTCCATGGTTCCTCTTTACCGTCCT CCTCCTTCTCGGCTACACCTGCTTCAACAGGTAGCAGCTACAAGCTGGTCGTGTGCATGG CTTCCTCCACAGATCAGCCGATAATCATAGGGCTTGCTGCAGACTCTGGATGTGGAAAGA GTACATTCATGCGGCGGTTGACGAGCGTCTTCGGGGGTGCTGCGTCCCCTCCCAAGGGGG GTAACCCAGACTCCAACACTCTGATCAGTGACACCACTACTGTGATATGCTTGGATGATT ACCATTCTCTGGACCGCACCGGTCGAAAGCAGAAGGGTGTTACAGCGCTTGACCCTCGGG CGAACAACTTTGATCTCATGTATGAACAGGTGAAGGCGATTAAAGAAGGGAAGTCCATTG AGAAGCCCATCTACAACCATGTGACAGGCCTTTTGGATCCTCCGGAAACTATCCAGCCCC CCAAAATTTTTGTCATTGAGGGCCTGCATCCCATGTTTGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26302 |
Definition |
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum |
Align length |
135 |
Score (bit) |
254.0 |
E-value |
3.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951680|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0012_A19, 5' (641 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triti... 254 3e-67 sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesem... 248 1e-65 sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabi... 238 2e-62 sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spina... 238 3e-62 sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlam... 214 2e-55 sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (s... 173 8e-43 sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragmen... 115 3e-25 sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha... 60 7e-09 sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk P... 59 2e-08 sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar ... 59 2e-08 sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=ud... 52 3e-06 sp|P27515|URK1_YEAST Uridine kinase OS=Saccharomyces cerevisiae ... 45 2e-04 sp|A1S796|URK_SHEAM Uridine kinase OS=Shewanella amazonensis (st... 45 3e-04 sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (str... 44 7e-04 sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium GN=... 44 0.001 sp|P67409|URK_SALTI Uridine kinase OS=Salmonella typhi GN=udk PE... 44 0.001 sp|A9N7M0|URK_SALPB Uridine kinase OS=Salmonella paratyphi B (st... 44 0.001 sp|Q5PDX6|URK_SALPA Uridine kinase OS=Salmonella paratyphi A GN=... 44 0.001 sp|Q57MN1|URK_SALCH Uridine kinase OS=Salmonella choleraesuis GN... 44 0.001 sp|Q9HQC9|URK_HALSA Uridine kinase OS=Halobacterium salinarium G... 43 0.001 sp|P0A8F7|URK_SHIFL Uridine kinase OS=Shigella flexneri GN=udk P... 43 0.002 sp|P0A8F4|URK_ECOLI Uridine kinase OS=Escherichia coli (strain K... 43 0.002 sp|P0A8F5|URK_ECOL6 Uridine kinase OS=Escherichia coli O6 GN=udk... 43 0.002 sp|P0A8F6|URK_ECO57 Uridine kinase OS=Escherichia coli O157:H7 G... 43 0.002 sp|P52623|UCK1_MOUSE Uridine-cytidine kinase 1 OS=Mus musculus G... 43 0.002 sp|Q9HA47|UCK1_HUMAN Uridine-cytidine kinase 1 OS=Homo sapiens G... 43 0.002 sp|Q8DD30|COAA_VIBVU Pantothenate kinase OS=Vibrio vulnificus GN... 42 0.002 sp|Q92BL6|URK_LISIN Uridine kinase OS=Listeria innocua GN=udk PE... 42 0.003 sp|A7MHG8|URK_ENTS8 Uridine kinase OS=Enterobacter sakazakii (st... 42 0.003 sp|Q730F4|URK_BACC1 Uridine kinase OS=Bacillus cereus (strain AT... 42 0.003
>sp|P26302|KPPR_WHEAT Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 Length = 404
Score = 254 bits (648), Expect = 3e-67 Identities = 120/135 (88%), Positives = 130/135 (96%) Frame = +3
Query: 237 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 416 ++ + +QPI+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 51 VSCAVEQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 110
Query: 417 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 596 DYHSLDRTGRK+KGVTALDP+AN+FDLMYEQVKAIKEGK+IEKPIYNHVTGLLDP E IQ Sbjct: 111 DYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGKAIEKPIYNHVTGLLDPAELIQ 170
Query: 597 PPKIFVIEGLHPMFD 641 PPKIFVIEGLHPM+D Sbjct: 171 PPKIFVIEGLHPMYD 185
>sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 397
Score = 248 bits (634), Expect = 1e-65 Identities = 118/139 (84%), Positives = 130/139 (93%) Frame = +3
Query: 225 LVVCMASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTV 404 ++ C+A + Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PP+GGNPDSNTLISDTTTV Sbjct: 41 VITCLAGDS-QTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTV 99
Query: 405 ICLDDYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPP 584 ICLDDYHSLDRTGRK+KGVTALDPRAN+FDLMYEQVKA+KEGK++EKPIYNHVTGLLD P Sbjct: 100 ICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKEGKAVEKPIYNHVTGLLDAP 159
Query: 585 ETIQPPKIFVIEGLHPMFD 641 E I+PPKI VIEGLHPMFD Sbjct: 160 ELIKPPKILVIEGLHPMFD 178
>sp|P25697|KPPR_ARATH Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1 Length = 395
Score = 238 bits (607), Expect = 2e-62 Identities = 113/135 (83%), Positives = 123/135 (91%) Frame = +3
Query: 237 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 416 + + + I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLD Sbjct: 43 LITCAQETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLD 102
Query: 417 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 596 DYHSLDR GRK++ VTALDPRAN+FDLMYEQVKA+K G ++EKPIYNHVTGLLDPPE IQ Sbjct: 103 DYHSLDRYGRKEQKVTALDPRANDFDLMYEQVKALKNGIAVEKPIYNHVTGLLDPPELIQ 162
Query: 597 PPKIFVIEGLHPMFD 641 PPKI VIEGLHPMFD Sbjct: 163 PPKILVIEGLHPMFD 177
>sp|P09559|KPPR_SPIOL Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 402
Score = 238 bits (606), Expect = 3e-62 Identities = 112/132 (84%), Positives = 123/132 (93%) Frame = +3
Query: 246 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 425 S Q I+IGLAADSGCGKSTFMRRLTSVFGGAA PPKGGNPDSNTLISDTTTVICLDD+H Sbjct: 52 SQQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDFH 111
Query: 426 SLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPK 605 SLDR GRK + VTALDP+AN+FDLMYEQVKA+KEGK+++KPIYNHV+GLLDPPE IQPPK Sbjct: 112 SLDRNGRKVEKVTALDPKANDFDLMYEQVKALKEGKAVDKPIYNHVSGLLDPPELIQPPK 171
Query: 606 IFVIEGLHPMFD 641 I VIEGLHPM+D Sbjct: 172 ILVIEGLHPMYD 183
>sp|P19824|KPPR_CHLRE Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1 Length = 375
Score = 214 bits (546), Expect = 2e-55 Identities = 99/130 (76%), Positives = 111/130 (85%) Frame = +3
Query: 252 DQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSL 431 D+ ++IGLAADSGCGKSTFMRR+TS+FGG PP GGNPDSNTLISD TTVICLDDYH L Sbjct: 34 DKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDSNTLISDMTTVICLDDYHCL 93
Query: 432 DRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQPPKIF 611 DR GRK KGVTAL P A NFDLMY QVKA+KEGKS++KPIYNHV+GL+D PE I+ P I Sbjct: 94 DRNGRKVKGVTALAPEAQNFDLMYNQVKALKEGKSVDKPIYNHVSGLIDAPEKIESPPIL 153
Query: 612 VIEGLHPMFD 641 VIEGLHP +D Sbjct: 154 VIEGLHPFYD 163
>sp|P37101|KPPR_SYNY3 Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1 Length = 332
Score = 173 bits (438), Expect = 8e-43 Identities = 83/135 (61%), Positives = 99/135 (73%) Frame = +3
Query: 237 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 416 M + D+ ++IG+A DSGCGKSTF+RRLT +FG + TVICLD Sbjct: 1 MTTQLDRVVLIGVAGDSGCGKSTFLRRLTDLFG-----------------EEFMTVICLD 43
Query: 417 DYHSLDRTGRKQKGVTALDPRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGLLDPPETIQ 596 DYHSLDR GRK GVTALDPRANNFDLMYEQ+K +K G+SI KPIYNH TGLLDPPE ++ Sbjct: 44 DYHSLDRQGRKAAGVTALDPRANNFDLMYEQIKTLKSGQSIMKPIYNHETGLLDPPEKVE 103
Query: 597 PPKIFVIEGLHPMFD 641 P K+ VIEGLHP++D Sbjct: 104 PNKVVVIEGLHPLYD 118
>sp|P85112|KPPR_VITSX Phosphoribulokinase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1 Length = 89
Score = 115 bits (287), Expect = 3e-25 Identities = 57/66 (86%), Positives = 59/66 (89%) Frame = +3
Query: 318 LTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKQKGVTALDPRANNFDL 497 LTSVFGGAA PP+GGNPDSNTLISDTTTVICLDDYHSLDR GVTALDPRAN+FDL Sbjct: 1 LTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDR------GVTALDPRANDFDL 54
Query: 498 MYEQVK 515 MYEQVK Sbjct: 55 MYEQVK 60
>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2 Length = 248
Score = 60.5 bits (145), Expect = 7e-09 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Frame = +3
Query: 237 MASSTDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLD 416 M ++ P++IG+A + CGKST + R+ N ++N S I Sbjct: 1 MKNTLKLPLLIGVAGGTSCGKSTIVERIIE------------NLNANAKQSGRQIDIVHL 48
Query: 417 DYHSLDRTGRKQKGVTALDPRAN-------NFDLMYEQVKAIKEGKSIEKPIYNHVTGLL 575 HS R ++ + A + + N NFDL+ E ++ + +GK++E P Y+ +T + Sbjct: 49 SLHSFYRELSAEEKILAREGKFNFDHPDQINFDLLAETLQNMIDGKTVEIPKYDMITSSM 108
Query: 576 DPPETIQPPKIFVIEGLHPMFD 641 + T++P K+ +IEG+ ++D Sbjct: 109 NGTVTVEPAKVIIIEGILLLYD 130
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum GN=udk PE=3 SV=1 Length = 207
Score = 58.9 bits (141), Expect = 2e-08 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Frame = +3
Query: 246 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 425 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 426 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 596 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 597 PPKIFVIEGLHPMFD 641 + V+EG++ ++D Sbjct: 106 DVDVIVLEGIYAIYD 120
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=udk PE=3 SV=1 Length = 207
Score = 58.9 bits (141), Expect = 2e-08 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Frame = +3
Query: 246 STDQPIIIGLAADSGCGKSTFMRRLTSVFGGAASPPKGGNPDSNTLISDTTTVICLDDYH 425 +T PI+I +A SG GK+TF + A PK + T+ VIC D Y+ Sbjct: 2 NTKSPILILIAGASGSGKTTFANEI------IARIPK----------NTTSVVICQDSYY 45
Query: 426 -SLDRTGRKQKGVTALD-PRANNFDLMYEQVKAIKEGKSIEKPIYNHVTGL-LDPPETIQ 596 S + +K++ + D P + ++LM EQ+ IK+ K I+ PIY++ T + LD I Sbjct: 46 ISNSQLNKKERRLINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLDKTIDIS 105
Query: 597 PPKIFVIEGLHPMFD 641 + V+EG++ ++D Sbjct: 106 DVDVIVLEGIYAIYD 120
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8GRU9 |
Definition |
tr|Q8GRU9|Q8GRU9_ORYSI Phosphoribulokinase OS=Oryza sativa subsp. indica |
Align length |
135 |
Score (bit) |
260.0 |
E-value |
6.0e-68 |
Report |
|