BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951765|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E10, 5'
         (606 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7...    31   5.6  

>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7
           PE=2 SV=1
          Length = 262

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 486 DFVMAERGHDGSCEGLDNRRGAGHQQGWTGS 578
           DF   +R HDG     DNRR +G    W  S
Sbjct: 230 DFFYEDRNHDGWSHDYDNRRDSGRNGKWRSS 260

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951765|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E10, 5'
         (606 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q08DY7|Q08DY7_BOVIN Usher syndrome 1C binding protein 1 OS=Bo...    35   2.6  
tr|B4IZC5|B4IZC5_DROGR GH15072 OS=Drosophila grimshawi GN=GH1507...    35   4.4  
tr|Q7NR16|Q7NR16_CHRVO Putative uncharacterized protein OS=Chrom...    34   7.5  
tr|Q47PB6|Q47PB6_THEFY Sugar transporter OS=Thermobifida fusca (...    34   7.5  

>tr|Q08DY7|Q08DY7_BOVIN Usher syndrome 1C binding protein 1 OS=Bos
           taurus GN=USHBP1 PE=2 SV=1
          Length = 698

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 40/130 (30%), Positives = 51/130 (39%), Gaps = 30/130 (23%)
 Frame = +1

Query: 118 YRSLPSSFAQLGAVEAP-QQRPPNCSGPVRACLLQEFAEKGCILALQQEAIKLGTCCRG* 294
           +++L  + + L A  A  + RPPNC GPV A    E A K C   L+QE    G+C R  
Sbjct: 114 FQTLQQALSSLEAAAAAWRHRPPNCPGPVEAKDGSEGAPKPC---LEQEG--AGSCQREA 168

Query: 295 RCQASRN-------------LLHLNMF-QALHLEGEVLH---------------IHPPST 387
              A RN             L+    F QA   E E+L                  PPS 
Sbjct: 169 ARLAERNAWLRLALGSREDELIRTQKFLQAFQAEKEMLQREVQELQDSLLRLEPFSPPSC 228

Query: 388 SQEGSSPKGT 417
            Q G S  G+
Sbjct: 229 DQAGGSGSGS 238


>tr|B4IZC5|B4IZC5_DROGR GH15072 OS=Drosophila grimshawi GN=GH15072
           PE=4 SV=1
          Length = 687

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -3

Query: 388 LSKVDECVKL---LLLNEALGTCSNVIGSSRLDIFN 290
           L +VD   KL   LL NEA+ +CS+++   RLDIFN
Sbjct: 443 LQRVDAIAKLAGCLLPNEAINSCSDILVEMRLDIFN 478


>tr|Q7NR16|Q7NR16_CHRVO Putative uncharacterized protein
           OS=Chromobacterium violaceum GN=CV_3969 PE=4 SV=1
          Length = 619

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 370 IHPPSTSQEGSSPKGTWMMDDYPLRLTDAH*VTVTGTPWILSWRKEATMVHVKAWITGGG 549
           +H P+ +      +  + +D YPL L  A     +G+P++     +A  +    + T GG
Sbjct: 116 VHAPAINGVVCKFRSAYPVDLYPLSLNSAKLELTSGSPYLRQLAPDAAALLTMEFQTHGG 175

Query: 550 LGISRDGLV-LQFICEGQ 600
           L ++  GL  L+F  +G+
Sbjct: 176 LALNSIGLTSLRFFLDGE 193


>tr|Q47PB6|Q47PB6_THEFY Sugar transporter OS=Thermobifida fusca
           (strain YX) GN=Tfu_1668 PE=3 SV=1
          Length = 472

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +1

Query: 415 TWMM--DDYPLRLTDAH*VTVTGTPWILSWRKEATMVHVKAWITGG------GLGISRDG 570
           TW++  + +PLR+  A     T T WI +W    T   ++ W   G         +   G
Sbjct: 390 TWVLLGEMFPLRIRAAAMAVATATQWITNWLVTVTFPSLRDWSLPGTYLVYTAFALLSFG 449

Query: 571 LVLQFICEGQG 603
            VL+F+ E +G
Sbjct: 450 FVLRFVRETKG 460