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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951770
Clone id TST38A01NGRL0012_E15
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_E15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGCAAACGACGAA
ATGCTTCGGGGAGCCGAAAATAGGTATAGATCCGGAGATTCCCGAATAGGTTAACCTTCC
AAACTGCCTGCTGAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAG
TAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGA
GCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAA
GCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCA
CGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCT
TGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGAGAGGGAAAGGCAAT
TGTGAGGAACTTAAGTTTGGAAGGTCTCCTCTTGATGTCAATGACGAGGAGGCTGCGACA
CGATTATTTGGCATGTCAAAGCAATTATTGT
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951770|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E15, 5'
         (571 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   1.3  
sp|Q15UD2|DNAJ_PSEA6 Chaperone protein dnaJ OS=Pseudoalteromonas...    32   1.7  
sp|Q566L4|ZN703_XENTR Zinc finger protein 703 OS=Xenopus tropica...    32   2.2  
sp|P34400|MIG10_CAEEL Abnormal cell migration protein 10 OS=Caen...    30   6.5  
sp|P40095|YEY8_YEAST Uncharacterized protein YER158C OS=Saccharo...    30   8.4  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   8.5  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 232 FHSPLLGESLLLFPPPATKMFQFAGLSL 149
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q15UD2|DNAJ_PSEA6 Chaperone protein dnaJ OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=dnaJ PE=3 SV=1
          Length = 379

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +1

Query: 307 ECCTPDGDSPVAGSTASSRSNPSSMGHAKSR-----VNQRGPPCKAKYS*VTDSEAVPRG 471
           EC T DG     GS+A + +     G  + R     V Q  P C  K   +TD   V  G
Sbjct: 145 ECDTCDGSGAKKGSSAKTCTTCHGQGQVQMRQGFFAVQQACPTCGGKGKIITDPCDVCHG 204

Query: 472 KGNCEELK 495
           +G  E+ K
Sbjct: 205 QGRVEKTK 212


>sp|Q566L4|ZN703_XENTR Zinc finger protein 703 OS=Xenopus tropicalis
           GN=znf703 PE=2 SV=1
          Length = 537

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 307 ECCTPDGDSPVAGSTASSRSNPSSM-GHAKSRVNQRGPPCKAKYS*VTDSEAVPRGKGNC 483
           E   P   +PV+     ++ +P ++     S++ +  PP  +K + VT S    +  G  
Sbjct: 60  EYLQPLSSTPVSPIELDAKKSPLALLAQTCSQIGKPDPPPSSKLNSVTSSGLSEKESGRS 119

Query: 484 EELKFGRSPLD 516
             LK G SPL+
Sbjct: 120 SSLKLGESPLE 130


>sp|P34400|MIG10_CAEEL Abnormal cell migration protein 10
           OS=Caenorhabditis elegans GN=mig-10 PE=2 SV=3
          Length = 779

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +1

Query: 301 AVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVPR-GKG 477
           A  C +PDGDS    S+++  SN       ++        C+   +  + ++  PR G+ 
Sbjct: 243 ASSCSSPDGDSAFGDSSSTESSN----NRCRNSAFSSNDSCRDSLNTPSPTQVSPRNGEL 298

Query: 478 NCEELKFG--RSPLDVNDEEAATRLF 549
           N EE K    R  L+   E   T++F
Sbjct: 299 NAEEAKAQKIRQALEKMKEAKVTKIF 324


>sp|P40095|YEY8_YEAST Uncharacterized protein YER158C
           OS=Saccharomyces cerevisiae GN=YER158C PE=1 SV=1
          Length = 573

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 569 NNCFDMPNNRVAASSSLTSRGDLPNLSSSQLPFPLGTASLS 447
           N+    P    ++SSSL SRG + ++SSS  P P   +S S
Sbjct: 442 NSSISSPAPSSSSSSSLVSRGPMQSISSSPTPAPSSGSSKS 482


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +1

Query: 265 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 372
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id A7PTD9
Definition tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera
Align length 33
Score (bit) 55.8
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951770|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E15, 5'
         (571 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    56   2e-17
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    91   5e-17
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    91   5e-17
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    91   5e-17
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   2e-16
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    78   3e-15
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    79   2e-13
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    77   9e-13
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    75   3e-12
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            59   2e-11
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    71   5e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    71   5e-11
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            65   3e-09
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   5e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   1e-08
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    59   2e-07
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    59   2e-07
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    57   9e-07
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    55   2e-06
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    55   3e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    55   4e-06
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   6e-06
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    54   6e-06
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    54   8e-06
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    51   4e-05
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who...    50   5e-05
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    49   1e-04
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    49   2e-04
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    42   2e-04
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    48   3e-04

>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 55.8 bits (133), Expect(3) = 2e-17
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = -2

Query: 471 PSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 373
           PSRY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 240 PSRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 44.7 bits (104), Expect(3) = 2e-17
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = -2

Query: 135 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 13
           F++QF RLTY            PKHFV  +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



 Score = 32.0 bits (71), Expect(3) = 2e-17
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 356 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 249
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 304 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVPR 468
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VPR
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVPR 83


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 304 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVPR 468
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VPR
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVPR 86


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 90.9 bits (224), Expect = 5e-17
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 304 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVPR 468
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VPR
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVPR 81


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +1

Query: 304 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 465
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 77.8 bits (190), Expect(2) = 3e-15
 Identities = 48/85 (56%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
 Frame = -1

Query: 247 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAV------WKVNLFGNLRIY 86
           F LFPF SPLL ES LL  PP TKMFQF G +L    IQ  +      W V  FG+LRI 
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCALHALWIQAWILPHYGQW-VPPFGHLRIN 125

Query: 85  TYFRLPEAFRRLPRPSSSLGA*VST 11
              +LPEAFRRLPRPSS+  A  ST
Sbjct: 126 ACLQLPEAFRRLPRPSSAPSAKAST 150



 Score = 28.1 bits (61), Expect(2) = 3e-15
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 416 GPR*FTRDFACPMLLGLERELAVLPATGLSPS 321
           GP  F RD +CP +L +      +  TGLSPS
Sbjct: 4   GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 35/44 (79%), Positives = 41/44 (93%)
 Frame = +1

Query: 1   KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPA 132
           KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA
Sbjct: 63  KGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPA 106


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 76.6 bits (187), Expect = 9e-13
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +1

Query: 325 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVPR 468
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VPR
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVPR 48


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 66/183 (36%), Positives = 77/183 (42%), Gaps = 5/183 (2%)
 Frame = -3

Query: 536 AASSSLTSRGDLPNLSSSQLPFPLGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERE 357
           A   S++    LP LS    PFP GT+SLSVT+EYL L+ GP  F +DF CP LL  +  
Sbjct: 87  ACRHSVSGTVSLP-LSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTR 145

Query: 356 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFTV*ALPVSLAVTRGIAFAFXXXXXX 177
                 TGLSP+  +               H P       P SLA T G++         
Sbjct: 146 FT---PTGLSPAMAR----LSRRFRLCKYQHWPG------PRSLATTNGVS---VDVLSS 189

Query: 176 XXXXXXXXSCLLLNSAGSLE-----G*PIRESPDLYLFSAPRSISSFATPFFVSGCLGIH 12
                      LLN           G PIR S D  L SAPR  S  AT F  S C GIH
Sbjct: 190 GYLDVSVRPVRLLNLCIQFRITLRWGFPIRISTDQSLLSAPRGFSQSATSFIASQCQGIH 249

Query: 11  RKP 3
             P
Sbjct: 250 EMP 252


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect(2) = 2e-11
 Identities = 38/72 (52%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = -1

Query: 250 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*IQQAVWKVNLFGNLRIYTYFRL 71
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  IQQ +  +   G       F  
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 70  PE---AFRRLPR 44
           P+   A+  LPR
Sbjct: 105 PKHFVAYHALPR 116



 Score = 33.5 bits (75), Expect(2) = 2e-11
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -3

Query: 380 MLLGLERELAVLPATGLSPSGVQ 312
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23



 Score = 42.0 bits (97), Expect = 0.024
 Identities = 22/47 (46%), Positives = 24/47 (51%)
 Frame = -2

Query: 150 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 10
           L+     +Q   LTY            PKHFV  HAL RLWVPRYPP
Sbjct: 78  LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124