DK951782 |
Clone id |
TST38A01NGRL0012_F03 |
Library |
TST38 |
Length |
597 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_F03. 5' end sequence. |
Accession |
DK951782 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL477Contig1 |
Sequence |
CCCTAATCCCCTTCACAGATCTGTCTATACCTTGCGTTTCCTTTGGCAGAGAAAGAGAAG CAGAGAGCCATGTCGAAGGAGTTGAAGGTGAAGCTTAAGTCTTCAGATGACGAGATGTTC GAGGTGGAGGAGATAGTAGCCTTCGAGTCGCAGACCATCAAGGACATGGTTGAAGACACA GGTACTGACTCCGTTATCCCTCTCCTCAACGTTTCCTCCAAGATCCTCTCCAAGGTCATC GAGTACTGCCGTTATCATGCCCTCGAGGTTCCTAAGGGCGGTGATGACAAGCCAGCCCTC ACCGACGAGGATGTCAAGCACTGGGATGCTGAGTTTCTCAAAGTTGACCAGGCCACGCTC TTTGATCTTATTCTGGCTGCCAACTATCTTAACATTCAGAGCTTACTGGATTTGACATGC CAGTGTGTGGCAGATATGATTAAAGGCAAAACTCCGGAGGAGATCAGGAAAACATTTAAT ATAAAGAATGACTTCACTCCTGAAGAGGAAGAAGAGGTCAGGAGGGAGAATCAATGGGCC TTTGAGTGATCCTGACAAGACAGGAATTGAAGGGCAGTTTGTGTAGCAGTCAAAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FHW7 |
Definition |
sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana |
Align length |
171 |
Score (bit) |
202.0 |
E-value |
8.0e-52 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951782|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0012_F03, 5' (597 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thalia... 202 8e-52 sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thalia... 196 6e-50 sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a... 166 8e-41 sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b... 165 2e-40 sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xeno... 163 5e-40 sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus... 163 5e-40 sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pong... 163 5e-40 sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus ... 163 5e-40 sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Maca... 163 5e-40 sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo... 163 5e-40 sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gall... 163 5e-40 sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavi... 163 5e-40 sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos ... 163 5e-40 sp|Q9Y709|SKP1_SCHPO Suppressor of kinetochore protein 1 OS=Schi... 148 2e-35 sp|P52286|SKP1_YEAST Suppressor of kinetochore protein 1 OS=Sacc... 119 2e-26 sp|Q751F9|ELOC_ASHGO Elongin-C OS=Ashbya gossypii GN=ELC1 PE=3 SV=1 42 0.002 sp|Q03071|ELOC_YEAST Elongin-C OS=Saccharomyces cerevisiae GN=EL... 41 0.005 sp|A7MFA8|BETA_ENTS8 Choline dehydrogenase OS=Enterobacter sakaz... 35 0.29 sp|Q6G4W4|Y218_BARHE UPF0090 protein BH02180 OS=Bartonella hense... 34 0.49 sp|A2RUW0|CA175_RAT Uncharacterized protein C1orf175 homolog OS=... 34 0.65 sp|Q6G0N9|Y206_BARQU UPF0090 protein BQ02060 OS=Bartonella quint... 33 1.1 sp|Q5HKG6|BUTA_STAEQ Acetoin(diacetyl) reductase OS=Staphylococc... 33 1.1 sp|Q8CQD2|BUTA_STAES Acetoin(diacetyl) reductase OS=Staphylococc... 33 1.4 sp|O95359|TACC2_HUMAN Transforming acidic coiled-coil-containing... 31 4.2 sp|O17580|NOC2L_CAEEL Nucleolar complex protein 2 homolog OS=Cae... 31 4.2 sp|A4QYF9|CHZ1_MAGGR Histone H2A.Z-specific chaperone CHZ1 OS=Ma... 31 5.5 sp|Q4IBS9|BRO1_GIBZE Vacuolar protein-sorting protein BRO1 OS=Gi... 31 5.5 sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizos... 30 7.1 sp|Q46J23|RPOC1_PROMT DNA-directed RNA polymerase subunit gamma ... 30 7.1 sp|A2C4N1|RPOC1_PROM1 DNA-directed RNA polymerase subunit gamma ... 30 7.1
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1 Length = 171
Score = 202 bits (515), Expect = 8e-52 Identities = 111/171 (64%), Positives = 123/171 (71%), Gaps = 12/171 (7%) Frame = +1
Query: 70 MSKELKVKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSVIPLLNVSSKILSKVIEYC 249 MS K+ LKSSD E FE++E VA ESQTIK M+ED TD+ IPL NV+SKILSKVIEYC Sbjct: 1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60
Query: 250 RYH--ALEVPKGGDDKPALT----------DEDVKHWDAEFLKVDQATLFDLILAANYLN 393 + H A E + D A T DED+K WD+EF+KVDQ TLFDLILAANYLN Sbjct: 61 KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120
Query: 394 IQSLLDLTCQCVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 I+ LLDLTCQ VADMIKGKTPEEIRKTFNIKNDFTP NQWAFE Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1 Length = 160
Score = 196 bits (499), Expect = 6e-50 Identities = 101/156 (64%), Positives = 118/156 (75%), Gaps = 2/156 (1%) Frame = +1
Query: 85 KVKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSVIPLLNVSSKILSKVIEYCRYHAL 264 K+ LKSSD E FEVEE VA ESQTI MVED D+ +PL NV+SKIL+KVIEYC+ H Sbjct: 5 KIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVE 64
Query: 265 EVPKGGD--DKPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQCVADM 438 + + A +D+D+K WDA+F+K+DQATLF+LILAANYLNI++LLDLTCQ VADM Sbjct: 65 AAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADM 124
Query: 439 IKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 IKGKTPEEIR TFNIKNDFTP NQWAFE Sbjct: 125 IKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1 Length = 162
Score = 166 bits (420), Expect = 8e-41 Identities = 86/152 (56%), Positives = 113/152 (74%), Gaps = 2/152 (1%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTG-TDSVIPLLNVSSKILSKVIEYCRYHAL 264 VKL+SSD+++FE+E+ +A S TIK+M+ED G +DS IPL NV+S IL KV++YCR+H Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQ 63
Query: 265 EV-PKGGDDKPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQCVADMI 441 P+G D K +D+ +D +F KVDQ TLF+LILAANYL+I+ LLD+TC+ VA+MI Sbjct: 64 HPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMI 123
Query: 442 KGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 537 +GKTPEEIRK FNIKNDFTP N+W Sbjct: 124 RGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1 Length = 162
Score = 165 bits (417), Expect = 2e-40 Identities = 85/152 (55%), Positives = 113/152 (74%), Gaps = 2/152 (1%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTG-TDSVIPLLNVSSKILSKVIEYCRYHAL 264 VKL+SSD+++FE+E+ +A S TIK+M+ED G +D+ IPL NV+S IL KV++YCR+H Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQ 63
Query: 265 EV-PKGGDDKPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQCVADMI 441 P+G D K +D+ +D +F KVDQ TLF+LILAANYL+I+ LLD+TC+ VA+MI Sbjct: 64 HPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMI 123
Query: 442 KGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 537 +GKTPEEIRK FNIKNDFTP N+W Sbjct: 124 RGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2 Length = 163
Score = 163 bits (413), Expect = 5e-40 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 7/160 (4%) Frame = +1
Query: 88 VKLKSSDDEMFEVEEIVAFESQTIKDMVEDTGTDSV-----IPLLNVSSKILSKVIEYCR 252 +KL+SSD E+FEV+ +A +S TIK M+ED G D +PL NV++ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63
Query: 253 YHALEVPKGGDD--KPALTDEDVKHWDAEFLKVDQATLFDLILAANYLNIQSLLDLTCQC 426 +H + P DD K TD D+ WD EFLKVDQ TLF+LILAANYL+I+ LLD+TC+ Sbjct: 64 HHKDDPPPPEDDENKEKRTD-DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKT 122
Query: 427 VADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 546 VA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 123 VANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL63 |
Definition |
tr|A9NL63|A9NL63_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
159 |
Score (bit) |
233.0 |
E-value |
5.0e-60 |
Report |
|