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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951798
Clone id TST38A01NGRL0012_F19
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_F19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGAGAAGCCCACCAGTAGCTTCCTCATGTTCCTAGAAAGCTTGAATGAAAAGAGAGCAGA
GGAGGAGGCCAAACTCAGAGAGAAGGACCCTTCCAGGCCACCGTTCAACCCGAAACCCAA
CAAGCATCTCTTTGAAGGTAGCAAGCCGTTATTCACCATACCAAGGCCTATACAGCCTGC
ACATGTACCTCGTGACTATGTACCTCCTTCATTGGATCCAAATGTCAATACCACTCCGAA
GAGAATATTCTCGCCTATGCCTCCCAGAAAGCCAAAGCCACAGCCACAGCCACAGCCAAC
AGAGTCGACGACGACAACACCCATCGACAAGGAGGATGCTTTGTCACAGGCAGCTGCCAG
ACCCATTCAGCCAGCAGGTGTTGAAGAATTTTCACCTACAGGCACAACAGACCAGCCATC
AACGTCTGTTGGCTCCTTGTCATCATCTTCTGATGGAAGGCCATTGGCTTCAGATGGTTC
TCCTTCCCCTCCACCTTTGGGAAGTGCATTTTCTACTCCTGCCACCCATACCGAG
■■Homology search results ■■ -
sp_hit_id A6X374
Definition sp|A6X374|MINC_OCHA4 Probable septum site-determining protein minC OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
Align length 50
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951798|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_F19, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6X374|MINC_OCHA4 Probable septum site-determining protein mi...    32   2.5  
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Ho...    30   5.7  
sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing pr...    30   7.4  
sp|A4IHB9|NHDC2_XENTR Mitochondrial sodium/hydrogen exchanger NH...    30   9.5  
sp|Q05041|HNFAA_XENLA Hepatocyte nuclear factor 1-alpha-A OS=Xen...    30   9.5  
sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mu...    30   9.7  

>sp|A6X374|MINC_OCHA4 Probable septum site-determining protein minC
           OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
           NCTC 12168) GN=minC PE=3 SV=1
          Length = 242

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 531 VWVAGVENALPKGGGEG-EPSEANGLPSEDDDKEPTDVDGWSVVPVGENS 385
           VW+ G ENA P   G G  P+   G P+ D D E T+       PV   S
Sbjct: 78  VWITGFENARPSLLGPGMPPAMRGGQPAADFDPEITEPKSQERTPVAPAS 127


>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo
           sapiens GN=TCERG1 PE=1 SV=2
          Length = 1098

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           P RPPF   P         P   IP P+ P H+ R   PP + P +++ P
Sbjct: 62  PPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQR---PPFMPPPMSSMP 108


>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein
            1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1
          Length = 2542

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 486  EGEPSEANGLPSEDDDKEPTDVDGWSVVPVGENSSTPAG*MGLAA 352
            E +P E + LP ED+D+E  D D    VP+   S+T    +G++A
Sbjct: 1476 ENKPKENSELP-EDEDEEENDEDVEQEVPIEPPSATTTTTIGISA 1519


>sp|A4IHB9|NHDC2_XENTR Mitochondrial sodium/hydrogen exchanger NHA2
           OS=Xenopus tropicalis GN=nhedc2 PE=2 SV=1
          Length = 539

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 102 RSTRNPTSISLKVASRYSPYQGLYSLHMYLVTMYLLHW 215
           + ++N T+I +++ +   P QG +SL +  VTM +L W
Sbjct: 69  KGSQNQTNICMRIRAFACPPQGCFSLAITNVTMVILIW 106


>sp|Q05041|HNFAA_XENLA Hepatocyte nuclear factor 1-alpha-A
           OS=Xenopus laevis GN=hnf1-A PE=2 SV=1
          Length = 605

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 339 LCHRQLPDP-FSQQVLKNFHLQAQQTSHQRLLAPCHHLL 452
           LCHR  P P  S   L ++H  +   +H  LL+P H+ +
Sbjct: 554 LCHRLSPIPTVSSASLVHYHNSSSPENHSHLLSPSHNTI 592


>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus
           musculus GN=Tcerg1 PE=1 SV=2
          Length = 1100

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           P RPPF   P         P   IP P+ P H+ R   PP + P +   P
Sbjct: 62  PPRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQR---PPFMPPPMGAMP 108
tr_hit_id Q7ZWT6
Definition tr|Q7ZWT6|Q7ZWT6_XENLA TCERG1 protein (Fragment) OS=Xenopus laevis
Align length 50
Score (bit) 36.6
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951798|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_F19, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7ZWT6|Q7ZWT6_XENLA TCERG1 protein (Fragment) OS=Xenopus laev...    37   0.85 
tr|Q2VPN7|Q2VPN7_XENLA TCERG1 protein OS=Xenopus laevis GN=TCERG...    37   0.85 
tr|Q2NME8|Q2NME8_XENLA Potential gravity-related protein 1 OS=Xe...    37   0.85 
tr|Q4DYY8|Q4DYY8_TRYCR Mucin-associated surface protein (MASP), ...    35   1.9  
tr|Q4DSG3|Q4DSG3_TRYCR Mucin-associated surface protein (MASP), ...    35   1.9  
tr|Q4D5F5|Q4D5F5_TRYCR Mucin-associated surface protein (MASP), ...    35   2.5  
tr|Q4DYW9|Q4DYW9_TRYCR Mucin-associated surface protein (MASP), ...    34   4.2  
tr|B6NIU4|B6NIU4_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|Q1JPU9|Q1JPU9_DANRE Zgc:136560 OS=Danio rerio GN=zgc:136560 P...    34   5.5  
tr|Q8S9B5|Q8S9B5_VOLCA Matrix metalloproteinase OS=Volvox carter...    33   7.2  
tr|Q92LE5|Q92LE5_RHIME Periplasmic dipeptide transport protein O...    33   9.3  
tr|Q94G50|Q94G50_GOSHI Proline-rich protein-2 OS=Gossypium hirsu...    33   9.3  
tr|A7PXP6|A7PXP6_VITVI Chromosome chr12 scaffold_36, whole genom...    33   9.3  
tr|Q4DYY4|Q4DYY4_TRYCR Mucin-associated surface protein (MASP), ...    33   9.3  
tr|B6HS55|B6HS55_PENCH Pc22g25350 protein OS=Penicillium chrysog...    33   9.3  

>tr|Q7ZWT6|Q7ZWT6_XENLA TCERG1 protein (Fragment) OS=Xenopus laevis
           GN=TCERG1 PE=2 SV=1
          Length = 553

 Score = 36.6 bits (83), Expect = 0.85
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           P RPPF   P         PL  IP PI P H+ R   PP + P++ + P
Sbjct: 23  PPRPPFGRPPFDPSMPPIPPLSGIPPPIAPPHLQR---PPFMPPHIGSMP 69


>tr|Q2VPN7|Q2VPN7_XENLA TCERG1 protein OS=Xenopus laevis GN=TCERG1
           PE=2 SV=1
          Length = 623

 Score = 36.6 bits (83), Expect = 0.85
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           P RPPF   P         PL  IP PI P H+ R   PP + P++ + P
Sbjct: 60  PPRPPFGRPPFDPSMPPIPPLSGIPPPIAPPHLQR---PPFMPPHIGSMP 106


>tr|Q2NME8|Q2NME8_XENLA Potential gravity-related protein 1
           OS=Xenopus laevis PE=2 SV=1
          Length = 722

 Score = 36.6 bits (83), Expect = 0.85
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           P RPPF   P         PL  IP PI P H+ R   PP + P++ + P
Sbjct: 43  PPRPPFGRPPFDPSMPPIPPLSGIPPPIAPPHLQR---PPFMPPHIGSMP 89


>tr|Q4DYY8|Q4DYY8_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053507237.20
           PE=4 SV=1
          Length = 291

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -2

Query: 513 ENALPKGGGEGEPSEA---NGLPSEDDDKEPTDVDGWSVVPVGENSSTP 376
           EN LP G  EG PS     +G+ S + D E T  +G   VP+ E+++TP
Sbjct: 180 ENTLPAGIVEGNPSPPPPQDGVGSREQDGEGTTSEGQKNVPLPESAATP 228


>tr|Q4DSG3|Q4DSG3_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053509699.110
           PE=4 SV=1
          Length = 289

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 513 ENALPKG--GGEGEPSEANGLPSEDDDKEPTDVDGWSVVPVGENSSTP 376
           EN LP G  GG   P+   G+ S + D E T  +G   VP  E ++TP
Sbjct: 179 ENTLPGGIAGGNPSPAHEEGVDSREQDGEDTTSEGKKNVPSPETAATP 226


>tr|Q4D5F5|Q4D5F5_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053507163.40
           PE=4 SV=1
          Length = 291

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 513 ENALPKGGGEGEPSEA---NGLPSEDDDKEPTDVDGWSVVPVGENSSTP 376
           EN LP G  EG PS     +G+ S + D E T  +G   VP+ E ++TP
Sbjct: 181 ENTLPAGIVEGNPSPPPPQDGIHSREQDGEGTTSEGKKNVPLPETAATP 229


>tr|Q4DYW9|Q4DYW9_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053507237.270
           PE=4 SV=1
          Length = 296

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 513 ENALPKG-GGEGEPSEANGLPSEDDDKEPTDVDGWSVVPVGENSSTP 376
           EN LP G  G   P   +G+ S + D E T  +G   VP+ E+++TP
Sbjct: 186 ENTLPAGVAGGNPPPPKDGVGSREQDGEDTTSEGQKNVPLPESAATP 232


>tr|B6NIU4|B6NIU4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_95650 PE=4 SV=1
          Length = 677

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query: 98  PPFNPKPNKHLFEGSKPLFTIPRPIQPAH---VPRDYVPPSLDPNVNTTP 238
           PP NP+P  HL  G  P  T P P QP+H    P    P    P+   +P
Sbjct: 256 PPTNPRPPTHLSHGVSPR-TQPTPTQPSHGASPPTQLQPTPTQPSPRLSP 304


>tr|Q1JPU9|Q1JPU9_DANRE Zgc:136560 OS=Danio rerio GN=zgc:136560 PE=2
           SV=1
          Length = 461

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 95  RPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTP 238
           +PP  P P K       P  T+  P++P  VP DYVP    P  NT P
Sbjct: 174 KPPSPPGPGKGTLGRHSPYRTL-EPVRPPVVPNDYVP---SPTRNTAP 217


>tr|Q8S9B5|Q8S9B5_VOLCA Matrix metalloproteinase OS=Volvox carteri
           f. nagariensis GN=lsg2 PE=2 SV=1
          Length = 625

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +2

Query: 89  PSRPPFNPKPNKHLFEGSKPLFTIPRPIQPAHVPRDYVPPSLDPNVNTTPKR 244
           P RPP +P P   L     P F  P P Q    PR   PP   P   ++P+R
Sbjct: 566 PPRPPTSPPPPPQLKASKAPRF--PTPPQKPRPPRPPPPPRPPPRRPSSPRR 615