| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951860|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_I09, 5'
(586 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, ... 86 2e-16
sp|O49347|PSBY_ARATH Photosystem II core complex proteins psbY, ... 84 7e-16
sp|Q4G385|PSBY_EMIHU Photosystem II protein Y OS=Emiliania huxle... 35 0.27
sp|A2BXA4|PSBY_PROM5 Photosystem II protein Y OS=Prochlorococcus... 34 0.47
sp|P59907|PSBY_PROMP Photosystem II protein Y OS=Prochlorococcus... 34 0.61
sp|Q31AA8|PSBY_PROM9 Photosystem II protein Y OS=Prochlorococcus... 34 0.61
sp|A2BRU6|PSBY_PROMS Photosystem II protein Y OS=Prochlorococcus... 33 0.80
sp|A8G5I7|PSBY_PROM2 Photosystem II protein Y OS=Prochlorococcus... 33 1.0
sp|P49543|PSBY_ODOSI Photosystem II protein Y OS=Odontella sinen... 33 1.0
sp|A0T0G0|PSBY_PHATR Photosystem II protein Y OS=Phaeodactylum t... 33 1.4
sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein... 33 1.4
sp|P47775|GPR12_HUMAN Probable G-protein coupled receptor 12 OS=... 32 2.3
sp|A0T0V3|PSBY_THAPS Photosystem II protein Y OS=Thalassiosira p... 32 3.0
sp|Q9Z200|SH2B2_RAT SH2B adapter protein 2 OS=Rattus norvegicus ... 32 3.1
sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens... 31 4.0
sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein... 31 4.0
sp|Q7VD03|PSBY_PROMA Photosystem II protein Y OS=Prochlorococcus... 31 5.2
sp|P51206|PSBY_PORPU Photosystem II protein Y OS=Porphyra purpur... 31 5.2
sp|Q82TZ6|RS2_NITEU 30S ribosomal protein S2 OS=Nitrosomonas eur... 30 6.7
sp|Q1XDT1|PSBY_PORYE Photosystem II protein Y OS=Porphyra yezoen... 30 6.7
sp|A7HX96|PLSX_PARL1 Fatty acid/phospholipid synthesis protein p... 30 6.7
sp|A8ALC8|DGTP_CITK8 Deoxyguanosinetriphosphate triphosphohydrol... 30 6.8
sp|Q12774|ARHG5_HUMAN Rho guanine nucleotide exchange factor 5 O... 30 6.8
sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella ... 30 8.9
sp|Q6NZY7|BORG3_HUMAN Cdc42 effector protein 5 OS=Homo sapiens G... 30 8.9
>sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY,
chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2
Length = 199
Score = 85.5 bits (210), Expect = 2e-16
Identities = 46/114 (40%), Positives = 70/114 (61%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 293
+D+RGL +L + PA+GWVLFNIL+PALNQ+++M++ K
Sbjct: 91 SDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATP 150
Query: 294 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
Q + + +G SD RG +L+ ++PA+GWVLFNILQPA+NQL++M++
Sbjct: 151 EAQ--AASEEIARG----SDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRS 198
Score = 71.6 bits (174), Expect = 3e-12
Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Frame = +3
Query: 348 SDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT-SKGIVVSLGL-GAAASGVFPGRS 521
SD RGL L+ ++PALGWVLFNILQPA+NQ+++M+ K +V LGL G A SG+
Sbjct: 91 SDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATP 150
Query: 522 DAIQEMSSIAAADNDSRGILL 584
+A Q S A +D+RG LL
Sbjct: 151 EA-QAASEEIARGSDNRGTLL 170
>sp|O49347|PSBY_ARATH Photosystem II core complex proteins psbY,
chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1
Length = 189
Score = 83.6 bits (205), Expect = 7e-16
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Frame = +3
Query: 297 VQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVS 476
+Q++ LA A SD RGL L+ +VPA+ WVL+NILQPAINQ+++M+ SKGIVV
Sbjct: 67 IQQIAQLA----AANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVG 122
Query: 477 LGLGA--AASGVFPGRSDAIQEMSSIAAADNDSRGILL 584
LG+G AASG+ +A + AAA +DSRG LL
Sbjct: 123 LGIGGGLAASGLLTPPPEA-YAAAEAAAASSDSRGQLL 159
Score = 78.6 bits (192), Expect = 2e-14
Identities = 40/114 (35%), Positives = 65/114 (57%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 293
+D+RGL +L + PA+ WVL+NIL+PA+NQ+++M+ K
Sbjct: 80 SDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPP 139
Query: 294 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
+ + A SD+RG +L+ + PAL WVL+NILQPA+NQ+++M++
Sbjct: 140 EAYA------AAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
>sp|Q4G385|PSBY_EMIHU Photosystem II protein Y OS=Emiliania huxleyi
GN=psbY PE=3 SV=1
Length = 35
Score = 35.0 bits (79), Expect = 0.27
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +3
Query: 117 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRM 215
D+R L+VL +A A W LFNI + AL QL RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
Score = 30.4 bits (67), Expect = 6.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 351 DARGLVLVASLVPALGWVLFNILQPAINQLDRM 449
D R LV++ + A W LFNI + A+ QL RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
>sp|A2BXA4|PSBY_PROM5 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9515) GN=psbY PE=3 SV=1
Length = 39
Score = 34.3 bits (77), Expect = 0.47
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 357 RGLVLVASLVPALGWVLFNILQPAINQLDR 446
R LV+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
Score = 31.2 bits (69), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 123 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 212
R L+V + A+ WV+FNI KPA Q +R
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|P59907|PSBY_PROMP Photosystem II protein Y OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1378 / MED4) GN=psbY
PE=3 SV=1
Length = 38
Score = 33.9 bits (76), Expect = 0.61
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 357 RGLVLVASLVPALGWVLFNILQPAINQLDR 446
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
Score = 30.8 bits (68), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 123 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 212
R ++V + A+ WV+FNI KPA Q +R
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|Q31AA8|PSBY_PROM9 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9312) GN=psbY PE=3 SV=1
Length = 37
Score = 33.9 bits (76), Expect = 0.61
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 357 RGLVLVASLVPALGWVLFNILQPAINQLDR 446
R +V+ A ++ A+ WV+FNI +PA Q DR
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDR 32
Score = 33.1 bits (74), Expect = 1.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 123 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 212
R ++V + AV WV+FNI KPA Q DR
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDR 32
>sp|A2BRU6|PSBY_PROMS Photosystem II protein Y OS=Prochlorococcus
marinus (strain AS9601) GN=psbY PE=3 SV=1
Length = 38
Score = 33.5 bits (75), Expect = 0.80
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 357 RGLVLVASLVPALGWVLFNILQPAINQLDR 446
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
Score = 30.4 bits (67), Expect = 6.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 123 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 212
R ++V + A+ WV+FNI KPA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|A8G5I7|PSBY_PROM2 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9215) GN=psbY PE=3 SV=1
Length = 38
Score = 33.1 bits (74), Expect = 1.0
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 357 RGLVLVASLVPALGWVLFNILQPAINQLDR 446
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVVFNIQKPAREQFNR 32
Score = 30.0 bits (66), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 123 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 212
R ++V + A+ WV+FNI KPA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|P49543|PSBY_ODOSI Photosystem II protein Y OS=Odontella sinensis
GN=psbY-A PE=3 SV=1
Length = 36
Score = 33.1 bits (74), Expect = 1.0
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 351 DARGLVLVASLVPALGWVLFNILQPAINQLDRM 449
D+R LV+ A L+ A W LFNI + AI Q+ R+
Sbjct: 2 DSRLLVIAAPLLVAASWALFNIGRLAIQQIQRL 34
Score = 30.0 bits (66), Expect = 8.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 117 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
DSR L++ L A W LFNI + A+ Q+ R+ +
Sbjct: 2 DSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA 36
>sp|A0T0G0|PSBY_PHATR Photosystem II protein Y OS=Phaeodactylum
tricornutum GN=psbY-A PE=3 SV=1
Length = 36
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 351 DARGLVLVASLVPALGWVLFNILQPAINQLDRMK 452
D R +V+ A ++ A W LFNI + AI Q+ R+K
Sbjct: 2 DTRLIVIAAPVLVAASWALFNIGRLAIQQIQRLK 35
|
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951860|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_I09, 5'
(586 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9SPH7|A9SPH7_PHYPA PsbY photosystem II polypeptide OS=Physco... 116 8e-25
tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core complex proteins psbY... 102 1e-20
tr|B6SQV2|B6SQV2_MAIZE Photosystem II core complex proteins psbY... 98 4e-19
tr|B6SR26|B6SR26_MAIZE Photosystem II core complex proteins psbY... 97 9e-19
tr|A9TFS8|A9TFS8_PHYPA Predicted protein (Fragment) OS=Physcomit... 94 7e-18
tr|A9U315|A9U315_PHYPA Predicted protein (Fragment) OS=Physcomit... 93 1e-17
tr|A9NZQ0|A9NZQ0_PICSI Putative uncharacterized protein OS=Picea... 92 3e-17
tr|A9NQA0|A9NQA0_PICSI Putative uncharacterized protein OS=Picea... 90 1e-16
tr|A9NL05|A9NL05_PICSI Putative uncharacterized protein OS=Picea... 90 1e-16
tr|Q6ZJ41|Q6ZJ41_ORYSJ cDNA clone:001-024-H10, full insert seque... 88 4e-16
tr|Q0J8C7|Q0J8C7_ORYSJ Os08g0119800 protein (Fragment) OS=Oryza ... 88 4e-16
tr|A2YQQ7|A2YQQ7_ORYSI Putative uncharacterized protein OS=Oryza... 88 4e-16
tr|A9PJ80|A9PJ80_POPJC Putative uncharacterized protein OS=Popul... 87 5e-16
tr|A9PJP0|A9PJP0_POPJC Putative uncharacterized protein OS=Popul... 87 9e-16
tr|A9PJP1|A9PJP1_POPJC Putative uncharacterized protein OS=Popul... 85 3e-15
tr|A9PJJ8|A9PJJ8_POPJC Putative uncharacterized protein OS=Popul... 85 3e-15
tr|A9PIV1|A9PIV1_POPJC Putative uncharacterized protein OS=Popul... 85 3e-15
tr|Q8LAL4|Q8LAL4_ARATH Putative uncharacterized protein OS=Arabi... 84 8e-15
tr|Q549N8|Q549N8_ARATH Putative uncharacterized protein OS=Arabi... 84 8e-15
tr|B7FLH1|B7FLH1_MEDTR Putative uncharacterized protein OS=Medic... 81 4e-14
tr|A4S5C8|A4S5C8_OSTLU Possible psbY, PSII-Y, photosystem II pol... 73 1e-11
tr|A8JKA1|A8JKA1_CHLRE Ycf32-related polyprotein of photosystem ... 69 3e-10
tr|A8I003|A8I003_CHLRE Ycf32-related subunit of photosystem II O... 68 4e-10
tr|Q5K5A8|Q5K5A8_ORYSA PsbY-like protein OS=Oryza sativa GN=MgBP... 67 6e-10
tr|Q00Y99|Q00Y99_OSTTA Manganese-binding protein PsbY, photosyst... 65 2e-09
tr|A7P454|A7P454_VITVI Chromosome chr1 scaffold_5, whole genome ... 55 3e-06
tr|Q8TGW9|Q8TGW9_CANAL Putative transcriptional repressor OS=Can... 39 0.28
tr|B4ML41|B4ML41_DROWI GK16823 OS=Drosophila willistoni GN=GK168... 37 0.82
tr|Q5ADP3|Q5ADP3_CANAL Putative uncharacterized protein CYC8 OS=... 36 1.4
tr|A2QK29|A2QK29_ASPNC Similarity to human dynactin-1 OS=Aspergi... 35 2.4
>tr|A9SPH7|A9SPH7_PHYPA PsbY photosystem II polypeptide
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166016 PE=4 SV=1
Length = 368
Score = 116 bits (291), Expect = 8e-25
Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 290
+ D+R + +L L PA+GWVLFNILKPALNQ+D+MK+ K
Sbjct: 91 EGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMKAAKSLVAGAGLGALALVAAPHADA 150
Query: 291 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK------ 452
QE+ +ADS DARGL+++ L+PA+GWVLFNIL+PA+NQ+++M+
Sbjct: 151 --AQEIAQVADS--------DARGLIIIGLLLPAVGWVLFNILRPALNQIEKMQDQGNAA 200
Query: 453 ---TSKGIVVSLGLGAAASGVFPGRSDAIQEMSSIAAADNDSRGILL 584
+G++ +LGLG A+ + P +DA QE++++ AD+DSRG+++
Sbjct: 201 AITRKRGVIGALGLGTASLFLAP-HADAAQEIATL--ADSDSRGLII 244
Score = 99.0 bits (245), Expect = 2e-19
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 22/180 (12%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS-------VKXXXXXXXXXXXXXX 269
D+D+RGL+++ +L PAVGWVLFNIL+PALNQ+++M+ +
Sbjct: 159 DSDARGLIIIGLLLPAVGWVLFNILRPALNQIEKMQDQGNAAAITRKRGVIGALGLGTAS 218
Query: 270 XXXXXXXXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLD-- 443
QE+ +LADS D+RGL+++ L+PA+GWVLFNIL+PA+NQ++
Sbjct: 219 LFLAPHADAAQEIATLADS--------DSRGLIIIGLLLPAVGWVLFNILKPALNQINNI 270
Query: 444 -----------RMKTSKGIVVSLGLGAAASGVF--PGRSDAIQEMSSIAAADNDSRGILL 584
R K G++ + G+ AAA + P +QE++ + A D+R ++L
Sbjct: 271 VEGNDTGAPVKRGKKFGGMIGATGISAAAMSLLAAPKADAQVQEIAQLGA---DTRPLIL 327
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 290
D+DSRGL+++ +L PAVGWVLFNILKPALNQ++ + V+
Sbjct: 236 DSDSRGLIIIGLLLPAVGWVLFNILKPALNQINNI--VEGNDTGAPVKRGKKFGGMIGAT 293
Query: 291 XXVQEMGSLADSMKG-------ATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRM 449
SL + K A + +D R L+L+ L PA+GWVLFNIL+PA+NQ+D+M
Sbjct: 294 GISAAAMSLLAAPKADAQVQEIAQLGADTRPLILLFILAPAIGWVLFNILKPALNQVDKM 353
Score = 80.5 bits (197), Expect = 6e-14
Identities = 42/91 (46%), Positives = 62/91 (68%)
Frame = +3
Query: 312 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 491
+LA A + D R + L+ LVPA+GWVLFNIL+PA+NQ+D+MK +K +V GLGA
Sbjct: 80 ALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMKAAKSLVAGAGLGA 139
Query: 492 AASGVFPGRSDAIQEMSSIAAADNDSRGILL 584
A P +DA QE++ + AD+D+RG+++
Sbjct: 140 LALVAAP-HADAAQEIAQV--ADSDARGLII 167
>tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 196
Score = 102 bits (255), Expect = 1e-20
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS--VKXXXXXXXXXXXXXXXXXXXX 287
+D+RG L+LFV+APA+GWVL+NIL+PALNQL+RM+S V
Sbjct: 80 SDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASA 139
Query: 288 XXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
Q++ +LA + A D RGL+L+ + PA+GWVLFNILQPA+NQ++RMK+
Sbjct: 140 AAAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKS 195
Score = 77.0 bits (188), Expect = 7e-13
Identities = 45/100 (45%), Positives = 67/100 (67%), Gaps = 10/100 (10%)
Frame = +3
Query: 315 LADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAA 494
+AD A SD RG +L+ + PA+GWVL+NILQPA+NQL+RM+ S+ +V LGLGAA
Sbjct: 69 VADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMR-SQAVVAGLGLGAA 127
Query: 495 ASGVF----PGRSDAIQEMSSIAAA------DNDSRGILL 584
A+G+ + A Q+++++AAA +D+RG+LL
Sbjct: 128 AAGMAAAPEASAAAAAQDLAALAAAAAAAAPADDNRGLLL 167
>tr|B6SQV2|B6SQV2_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 191
Score = 97.8 bits (242), Expect = 4e-19
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Frame = +3
Query: 117 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS---VKXXXXXXXXXXXXXXXXXXXX 287
DSRG L+L V+APA+GWVL+NIL+PALNQL+RM+S V
Sbjct: 79 DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEAS 138
Query: 288 XXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
VQ++ ++A A D+RGL+L+ + PA+GWVLFNILQPA+NQL+RM++
Sbjct: 139 AAVVQDLAAIA----AAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 190
Score = 81.6 bits (200), Expect = 3e-14
Identities = 45/97 (46%), Positives = 68/97 (70%), Gaps = 6/97 (6%)
Frame = +3
Query: 312 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 491
+LAD + A D+RG +L+ + PA+GWVL+NILQPA+NQL+RM++S+ + LGLGA
Sbjct: 67 ALAD-VAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGA 125
Query: 492 AASGVFPGRSDA----IQEMSSIAAA--DNDSRGILL 584
AA+ +A +Q++++IAAA +DSRG+LL
Sbjct: 126 AAAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLL 162
Score = 62.8 bits (151), Expect = 1e-08
Identities = 28/36 (77%), Positives = 35/36 (97%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
+DSRGLL+L V+APA+GWVLFNIL+PALNQL+RM+S
Sbjct: 155 DDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 190
>tr|B6SR26|B6SR26_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 176
Score = 96.7 bits (239), Expect = 9e-19
Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +3
Query: 117 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVK--XXXXXXXXXXXXXXXXXXXXX 290
DSRG L+L V+APA+GWVL+NIL+PALNQL+RM+S +
Sbjct: 65 DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAGMAAPPEASA 124
Query: 291 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
VQ++ ++A A D+RGL+L+ + PA+GWVLFNILQPA+NQL+RM++
Sbjct: 125 AVVQDLAAIA----AAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 175
Score = 87.8 bits (216), Expect = 4e-16
Identities = 47/96 (48%), Positives = 71/96 (73%), Gaps = 5/96 (5%)
Frame = +3
Query: 312 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 491
+LAD + A D+RG +L+ + PA+GWVL+NILQPA+NQL+RM++S+ + LGLGA
Sbjct: 52 ALADVVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGA 111
Query: 492 AASGV-FPGRSDA--IQEMSSIAAA--DNDSRGILL 584
AA+G+ P + A +Q++++IAAA +DSRG+LL
Sbjct: 112 AAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLL 147
Score = 62.8 bits (151), Expect = 1e-08
Identities = 28/36 (77%), Positives = 35/36 (97%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
+DSRGLL+L V+APA+GWVLFNIL+PALNQL+RM+S
Sbjct: 140 DDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 175
>tr|A9TFS8|A9TFS8_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_8237 PE=4 SV=1
Length = 130
Score = 93.6 bits (231), Expect = 7e-18
Identities = 49/114 (42%), Positives = 70/114 (61%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 290
+ D+R + +L L PA+GWVLFNILKPALNQ+D+M+S K
Sbjct: 26 EGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMRSAKALVAGAGLGSLAMLAAPHADA 85
Query: 291 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK 452
QE+ +A+S DARGL+++ L+PA+GWVLFNIL+PA+NQ ++M+
Sbjct: 86 --AQEIAQVAES--------DARGLIIIGLLLPAIGWVLFNILRPALNQFEKMQ 129
Score = 77.0 bits (188), Expect = 7e-13
Identities = 39/91 (42%), Positives = 63/91 (69%)
Frame = +3
Query: 312 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 491
+LA A + D R + L+ LVPA+GWVLFNIL+PA+NQ+D+M+++K +V GLG+
Sbjct: 15 ALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMRSAKALVAGAGLGS 74
Query: 492 AASGVFPGRSDAIQEMSSIAAADNDSRGILL 584
A P +DA QE++ + A++D+RG+++
Sbjct: 75 LAMLAAP-HADAAQEIAQV--AESDARGLII 102
Score = 55.1 bits (131), Expect = 3e-06
Identities = 21/37 (56%), Positives = 34/37 (91%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
++D+RGL+++ +L PA+GWVLFNIL+PALNQ ++M++
Sbjct: 94 ESDARGLIIIGLLLPAIGWVLFNILRPALNQFEKMQN 130
>tr|A9U315|A9U315_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_155209 PE=4 SV=1
Length = 137
Score = 92.8 bits (229), Expect = 1e-17
Identities = 49/114 (42%), Positives = 69/114 (60%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 290
+ D+R + +L L PA+GWVLFNIL+PALNQ+D+M+ K
Sbjct: 32 EGDNRVVALLIPLIPAIGWVLFNILQPALNQVDKMRGAKALVAGAGLGAAATLMAAPHAD 91
Query: 291 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK 452
QE +ADS DARGL++V L+PA+GWVLFNIL+PA+NQ+++M+
Sbjct: 92 A-AQEFAQIADS--------DARGLIIVGLLLPAIGWVLFNILRPALNQIEKMQ 136
Score = 82.8 bits (203), Expect = 1e-14
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = +3
Query: 312 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 491
++A A + D R + L+ L+PA+GWVLFNILQPA+NQ+D+M+ +K +V GLGA
Sbjct: 21 AMASQQIMALAEGDNRVVALLIPLIPAIGWVLFNILQPALNQVDKMRGAKALVAGAGLGA 80
Query: 492 AASGVFPGRSDAIQEMSSIAAADNDSRGILL 584
AA+ + +DA QE + I AD+D+RG+++
Sbjct: 81 AATLMAAPHADAAQEFAQI--ADSDARGLII 109
Score = 57.0 bits (136), Expect = 8e-07
Identities = 22/37 (59%), Positives = 35/37 (94%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
D+D+RGL+++ +L PA+GWVLFNIL+PALNQ+++M++
Sbjct: 101 DSDARGLIIVGLLLPAIGWVLFNILRPALNQIEKMQN 137
>tr|A9NZQ0|A9NZQ0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 207
Score = 91.7 bits (226), Expect = 3e-17
Identities = 46/116 (39%), Positives = 69/116 (59%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 293
+DSRG L+L L PA+ WVL+NIL+PALNQ++RMK
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGAGLVAFAGLGAAGGAAFLSNPEEA 154
Query: 294 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSK 461
++ L + ++D RGL+L+ ++PA+GWVLFNILQPA+NQ+++M++ K
Sbjct: 155 HAEQ---LVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRSGK 207
Score = 75.5 bits (184), Expect = 2e-12
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Frame = +3
Query: 348 SDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVF---PGR 518
SD+RG +L+ LVPA+ WVL+NILQPA+NQ++RMK + G+V GLGAA F P
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA-GLVAFAGLGAAGGAAFLSNPEE 153
Query: 519 SDAIQEMSSIAA--ADNDSRGILL 584
+ A Q + +AA A+ND+RG+LL
Sbjct: 154 AHAEQLVFDLAAKAANNDNRGLLL 177
Score = 60.8 bits (146), Expect = 5e-08
Identities = 26/39 (66%), Positives = 36/39 (92%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVK 227
+ND+RGLL+L V+ PA+GWVLFNIL+PALNQ+++M+S K
Sbjct: 169 NNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRSGK 207
>tr|A9NQA0|A9NQA0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 206
Score = 89.7 bits (221), Expect = 1e-16
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 293
+DSRG L+L L PA+ WVL+NIL+PALNQ++RMK
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGAGLVAFAGLGAAGGAAFLSNPEEA 154
Query: 294 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
++ L + ++D RGL+L+ ++PA+GWVLFNILQPA+NQ+++M++
Sbjct: 155 HAEQ---LVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205
Score = 75.5 bits (184), Expect = 2e-12
Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Frame = +3
Query: 348 SDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVF---PGR 518
SD+RG +L+ LVPA+ WVL+NILQPA+NQ++RMK G+V GLGAA F P
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK-GAGLVAFAGLGAAGGAAFLSNPEE 153
Query: 519 SDAIQEMSSIA--AADNDSRGILL 584
+ A Q + +A AA+ND+RG+LL
Sbjct: 154 AHAEQLVFDLAAKAANNDNRGLLL 177
Score = 60.1 bits (144), Expect = 9e-08
Identities = 25/37 (67%), Positives = 35/37 (94%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
+ND+RGLL+L V+ PA+GWVLFNIL+PALNQ+++M+S
Sbjct: 169 NNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205
>tr|A9NL05|A9NL05_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 206
Score = 89.7 bits (221), Expect = 1e-16
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 293
+DSRG L+L L PA+ WVL+NIL+PALNQ++RMK
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGAGLVAFAGLGAAGGAAFLSNPEEA 154
Query: 294 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
++ L + ++D RGL+L+ ++PA+GWVLFNILQPA+NQ+++M++
Sbjct: 155 HAEQ---LVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205
Score = 75.5 bits (184), Expect = 2e-12
Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Frame = +3
Query: 348 SDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVF---PGR 518
SD+RG +L+ LVPA+ WVL+NILQPA+NQ++RMK G+V GLGAA F P
Sbjct: 95 SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK-GAGLVAFAGLGAAGGAAFLSNPEE 153
Query: 519 SDAIQEMSSIA--AADNDSRGILL 584
+ A Q + +A AA+ND+RG+LL
Sbjct: 154 AHAEQLVFDLAAKAANNDNRGLLL 177
Score = 60.1 bits (144), Expect = 9e-08
Identities = 25/37 (67%), Positives = 35/37 (94%)
Frame = +3
Query: 111 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 221
+ND+RGLL+L V+ PA+GWVLFNIL+PALNQ+++M+S
Sbjct: 169 NNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205
>tr|Q6ZJ41|Q6ZJ41_ORYSJ cDNA clone:001-024-H10, full insert sequence
OS=Oryza sativa subsp. japonica GN=OJ1005_B05.27 PE=2
SV=1
Length = 205
Score = 87.8 bits (216), Expect = 4e-16
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +3
Query: 114 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVK-XXXXXXXXXXXXXXXXXXXXX 290
+D+RGL +L +APA+ WVL+NIL+PALNQL+RM+S +
Sbjct: 91 DDNRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSEQVLVAGLGLGAAAGAGLAFPPEA 150
Query: 291 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 455
QE+ LA + A D RGL+L+ + PA+ WVL+NILQPA+NQL+RM++
Sbjct: 151 SAAQEVARLA-AEAAAAEGGDNRGLLLLFVVAPAIAWVLYNILQPALNQLNRMRS 204
Score = 80.1 bits (196), Expect = 8e-14
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Frame = +3
Query: 315 LADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAA 494
+AD A D RGL L+ + PA+ WVL+NILQPA+NQL+RM++ + +V LGLGAA
Sbjct: 80 IADVAAAAAGADDNRGLALLLPIAPAIAWVLYNILQPALNQLNRMRSEQVLVAGLGLGAA 139
Query: 495 ASG--VFPGRSDAIQEMSSI-----AAADNDSRGILL 584
A FP + A QE++ + AA D+RG+LL
Sbjct: 140 AGAGLAFPPEASAAQEVARLAAEAAAAEGGDNRGLLL 176
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