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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951887
Clone id TST38A01NGRL0012_J13
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_J13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTATGTGAGGGAGATGAAAGGTCAC
GCGCCTTTAACAGACGACACCCATGATAGTGGTGCGTGGGAGAACTCTGGAAGAAGCTCG
GCCGGCTGCATGTCATGACGCTGAGGAAGAGAGTGAAGCTGCGTTTGCGCCGCTTGATGT
GTGTAGCAGGCGAGTGTCGGGACAGCACGCACTTCATGGATCTCGTGTGGCAAAGGCGTG
TGACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGCTCAGGAAGCCATCG
CCGAGGGAAGCTCTCTTAAGCTAACACGCGCGCGCGCGCGAGCGAGAGAGAGAGAGAGAG
AGAGAGGGAGAGAGAGAAACTTTAGAACGACGGCTTTGGCTCCTGCTCCCCACATTTCGT
TTTGCAATTATTATCGATGGTGAGCATATGCAGAGATTTAAAGTCAATTGGACGGCCTTT
CAGAGGAGAAAGCAAATGGCTACATTAGATGGAAAACAATTGTAAAAAAGAAATCATGTA
TCTTAA
■■Homology search results ■■ -
sp_hit_id Q9NPI9
Definition sp|Q9NPI9|IRK16_HUMAN Inward rectifier potassium channel 16 OS=Homo sapiens
Align length 46
Score (bit) 30.0
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951887|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_J13, 5'
         (546 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NPI9|IRK16_HUMAN Inward rectifier potassium channel 16 OS=H...    30   7.6  

>sp|Q9NPI9|IRK16_HUMAN Inward rectifier potassium channel 16 OS=Homo
           sapiens GN=KCNJ16 PE=2 SV=1
          Length = 418

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 199 RHSPATHIKRRKRSFTLFLSVMTCSRPSFFQSSPTHHYHGCRLLKA 62
           R S  +  K R+RSF+    V +C  P    +S TH Y      KA
Sbjct: 360 RESCTSDTKARRRSFSAVAIVSSCENPEETTTSATHEYRETPYQKA 405
tr_hit_id A3KNL7
Definition tr|A3KNL7|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio
Align length 50
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951887|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_J13, 5'
         (546 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3KNL7|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio GN=ms4a...    35   3.4  

>tr|A3KNL7|A3KNL7_DANRE Ms4a17a.17 protein OS=Danio rerio
           GN=ms4a17a.17 PE=2 SV=1
          Length = 293

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 239 TPLPHEIHEVRAVPTLACYTHQAAQTQLHSLPQRHDMQPAELLPEFSHAP 90
           +P PH +H +          H   Q    SLPQ  +  PAE L ++S  P
Sbjct: 218 SPRPHHVHGLNTSGIAVVSNHYVQQPPAESLPQYSEQPPAESLLQYSQQP 267