DK951907
Clone id TST38A01NGRL0012_K13
Library
Length 594
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_K13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GTGCTTTGGGCAGCTTGCTTTTTTTGAATAAAAAGCAGCCCATTTCTGTGTACTGCTCAA
TTAACAAAACCAGAGTTCTTTTAAGCAAGTGTTTAATACGCAGCCTTTACCTGCTCCTAA
GGGGCTTTGGGACCCCTAACCTTATGGTATCAAGCGTTGAATGAAATGGACATCAATGCT
GACCCTCACACAGAGGCATCGGAACCCATCACTCTGCCTTGATGCTCGACATCCTCTAGT
TTGCAGTCCAATATATGTCAGTCCTCCAGGCTTGCTGTTTCTTTTCCTGAGCATTGAGAA
TTTTGCACCTACAGTTGCCTCACCTCCTGACCGGTGTCCGCAATGATCTGAGGATCACAT
TGCAATGCAGCTACATGTCATGTTGCTGGGCTCATGTGCCTAACATGGCAGCCCCACTCA
CTGGGTCGAGTCCCTCGACTGGCAGAGTAAAGGTGCACTGCCTCTCAACAGGCGAGCGCC
AATGTGCCAAGAGAACTGCGATCGCCTCTGCTGAGTCTCCGCGTCTGTTAAGGAGTGACT
GGAGTTTGATCTTGGAGAAACCTCAAGAGTCAGCATTCAATTCCATTAGTAATC
■■Homology search results ■■ -
sp_hit_id Q39565
Definition sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
Align length 58
Score (bit) 32.0
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951907|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_K13, 5'
(594 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=C... 32 2.4
sp|P15207|ANDR_RAT Androgen receptor OS=Rattus norvegicus GN=Ar ... 30 9.1

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
OS=Chlamydomonas reinhardtii GN=ODA4 PE=3 SV=1
Length = 4568

Score = 32.0 bits (71), Expect = 2.4
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +2

Query: 176 MLTLTQRHRNP-----SLCLDARHPLVCSPIYVSPPGLLFLFLSIENFAPTVASPPDR 334
MLTL R P L L+ H + CSP VS G++F+ + P VAS D+
Sbjct: 2298 MLTLASNERIPLTPSMRLLLEINHMVHCSPATVSRGGVIFINADDVGWQPVVASWIDK 2355


>sp|P15207|ANDR_RAT Androgen receptor OS=Rattus norvegicus GN=Ar
PE=1 SV=1
Length = 902

Score = 30.0 bits (66), Expect = 9.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3

Query: 363 QCSYMSCCWAHVPNMAAPLTGSSPSTGRVKVHCLSTGE 476
QC Y H ++A P TGS P+T H L T E
Sbjct: 401 QCRYGDLASLHGGSVAGPSTGSPPATASSSWHTLFTAE 438


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951907|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_K13, 5'
(594 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******