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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951907
Clone id TST38A01NGRL0012_K13
Library
Length 594
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_K13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTGCTTTGGGCAGCTTGCTTTTTTTGAATAAAAAGCAGCCCATTTCTGTGTACTGCTCAA
TTAACAAAACCAGAGTTCTTTTAAGCAAGTGTTTAATACGCAGCCTTTACCTGCTCCTAA
GGGGCTTTGGGACCCCTAACCTTATGGTATCAAGCGTTGAATGAAATGGACATCAATGCT
GACCCTCACACAGAGGCATCGGAACCCATCACTCTGCCTTGATGCTCGACATCCTCTAGT
TTGCAGTCCAATATATGTCAGTCCTCCAGGCTTGCTGTTTCTTTTCCTGAGCATTGAGAA
TTTTGCACCTACAGTTGCCTCACCTCCTGACCGGTGTCCGCAATGATCTGAGGATCACAT
TGCAATGCAGCTACATGTCATGTTGCTGGGCTCATGTGCCTAACATGGCAGCCCCACTCA
CTGGGTCGAGTCCCTCGACTGGCAGAGTAAAGGTGCACTGCCTCTCAACAGGCGAGCGCC
AATGTGCCAAGAGAACTGCGATCGCCTCTGCTGAGTCTCCGCGTCTGTTAAGGAGTGACT
GGAGTTTGATCTTGGAGAAACCTCAAGAGTCAGCATTCAATTCCATTAGTAATC
■■Homology search results ■■ -
sp_hit_id Q39565
Definition sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
Align length 58
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951907|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_K13, 5'
         (594 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=C...    32   2.4  
sp|P15207|ANDR_RAT Androgen receptor OS=Rattus norvegicus GN=Ar ...    30   9.1  

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
            OS=Chlamydomonas reinhardtii GN=ODA4 PE=3 SV=1
          Length = 4568

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 176  MLTLTQRHRNP-----SLCLDARHPLVCSPIYVSPPGLLFLFLSIENFAPTVASPPDR 334
            MLTL    R P      L L+  H + CSP  VS  G++F+      + P VAS  D+
Sbjct: 2298 MLTLASNERIPLTPSMRLLLEINHMVHCSPATVSRGGVIFINADDVGWQPVVASWIDK 2355


>sp|P15207|ANDR_RAT Androgen receptor OS=Rattus norvegicus GN=Ar
           PE=1 SV=1
          Length = 902

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 363 QCSYMSCCWAHVPNMAAPLTGSSPSTGRVKVHCLSTGE 476
           QC Y      H  ++A P TGS P+T     H L T E
Sbjct: 401 QCRYGDLASLHGGSVAGPSTGSPPATASSSWHTLFTAE 438
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951907|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_K13, 5'
         (594 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******